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Items: 1 to 50 of 136

1.

Taxonomy of the order Mononegavirales: update 2018.

Amarasinghe GK, Aréchiga Ceballos NG, Banyard AC, Basler CF, Bavari S, Bennett AJ, Blasdell KR, Briese T, Bukreyev A, Caì Y, Calisher CH, Campos Lawson C, Chandran K, Chapman CA, Chiu CY, Choi KS, Collins PL, Dietzgen RG, Dolja VV, Dolnik O, Domier LL, Dürrwald R, Dye JM, Easton AJ, Ebihara H, Echevarría JE, Fooks AR, Formenty PBH, Fouchier RAM, Freuling CM, Ghedin E, Goldberg TL, Hewson R, Horie M, Hyndman TH, Jiāng D, Kityo R, Kobinger GP, Kondō H, Koonin EV, Krupovic M, Kurath G, Lamb RA, Lee B, Leroy EM, Maes P, Maisner A, Marston DA, Mor SK, Müller T, Mühlberger E, Ramírez VMN, Netesov SV, Ng TFF, Nowotny N, Palacios G, Patterson JL, Pawęska JT, Payne SL, Prieto K, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Siddell S, Smither SJ, Song Q, Song T, Stenglein MD, Stone DM, Takada A, Tesh RB, Thomazelli LM, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Vázquez-Morón S, Verdugo C, Volchkov VE, Wahl V, Walker PJ, Wang D, Wang LF, Wellehan JFX, Wiley MR, Whitfield AE, Wolf YI, Yè G, Zhāng YZ, Kuhn JH.

Arch Virol. 2018 Apr 11. doi: 10.1007/s00705-018-3814-x. [Epub ahead of print]

PMID:
29637429
2.

Fungi stabilize connectivity in the lung and skin microbial ecosystems.

Tipton L, Müller CL, Kurtz ZD, Huang L, Kleerup E, Morris A, Bonneau R, Ghedin E.

Microbiome. 2018 Jan 15;6(1):12. doi: 10.1186/s40168-017-0393-0.

3.

Integrative gene network analysis identifies key signatures, intrinsic networks and host factors for influenza virus A infections.

Forst CV, Zhou B, Wang M, Chou TW, Mason G, Song WM, Schadt E, Ghedin E, Zhang B.

NPJ Syst Biol Appl. 2017 Dec 4;3:35. doi: 10.1038/s41540-017-0036-x. eCollection 2017.

4.

ICTV Virus Taxonomy Profile: Nyamiviridae.

Dietzgen RG, Ghedin E, Jiāng D, Kuhn JH, Song T, Vasilakis N, Wang D, Ictv Report Consortium.

J Gen Virol. 2017 Dec;98(12):2914-2915. doi: 10.1099/jgv.0.000973. Epub 2017 Nov 9.

5.

Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses.

Zhou B, Deng YM, Barnes JR, Sessions OM, Chou TW, Wilson M, Stark TJ, Volk M, Spirason N, Halpin RA, Kamaraj US, Ding T, Stockwell TB, Salvatore M, Ghedin E, Barr IG, Wentworth DE.

J Clin Microbiol. 2017 Dec;55(12):3492-3501. doi: 10.1128/JCM.00957-17. Epub 2017 Oct 4.

PMID:
28978683
6.

Characterization of five unclassified orthobunyaviruses (Bunyaviridae) from Africa and the Americas.

Rogers MB, Gulino KM, Tesh RB, Cui L, Fitch A, Unnasch TR, Popov VL, Travassos da Rosa APA, Guzman H, Carrera JP, Vasilakis N, Ghedin E.

J Gen Virol. 2017 Sep;98(9):2258-2266. doi: 10.1099/jgv.0.000899.

7.

Getting the flu: 5 key facts about influenza virus evolution.

Johnson KEE, Song T, Greenbaum B, Ghedin E.

PLoS Pathog. 2017 Aug 24;13(8):e1006450. doi: 10.1371/journal.ppat.1006450. eCollection 2017 Aug. Review. No abstract available.

8.

Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus.

Sobel Leonard A, Weissman DB, Greenbaum B, Ghedin E, Koelle K.

J Virol. 2017 Jun 26;91(14). pii: e00171-17. doi: 10.1128/JVI.00171-17. Print 2017 Jul 15.

9.

Host response: Pregnancy impairs flu defences.

Ghedin E, Schultz-Cherry S.

Nat Microbiol. 2017 Apr 28;2:17077. doi: 10.1038/nmicrobiol.2017.77. No abstract available.

PMID:
28452981
10.

The role of 'omics' in the quest to eliminate human filariasis.

Lustigman S, Grote A, Ghedin E.

PLoS Negl Trop Dis. 2017 Apr 20;11(4):e0005464. doi: 10.1371/journal.pntd.0005464. eCollection 2017 Apr. Review. No abstract available.

11.

Taxonomy of the order Mononegavirales: update 2017.

Amarasinghe GK, Bào Y, Basler CF, Bavari S, Beer M, Bejerman N, Blasdell KR, Bochnowski A, Briese T, Bukreyev A, Calisher CH, Chandran K, Collins PL, Dietzgen RG, Dolnik O, Dürrwald R, Dye JM, Easton AJ, Ebihara H, Fang Q, Formenty P, Fouchier RAM, Ghedin E, Harding RM, Hewson R, Higgins CM, Hong J, Horie M, James AP, Jiāng D, Kobinger GP, Kondo H, Kurath G, Lamb RA, Lee B, Leroy EM, Li M, Maisner A, Mühlberger E, Netesov SV, Nowotny N, Patterson JL, Payne SL, Paweska JT, Pearson MN, Randall RE, Revill PA, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Smither SJ, Song Q, Stone DM, Takada A, Terregino C, Tesh RB, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Volchkov VE, Wahl-Jensen V, Walker PJ, Wang B, Wang D, Wang F, Wang LF, Werren JH, Whitfield AE, Yan Z, Ye G, Kuhn JH.

Arch Virol. 2017 Aug;162(8):2493-2504. doi: 10.1007/s00705-017-3311-7. Epub 2017 Apr 7.

PMID:
28389807
12.

Defining Brugia malayi and Wolbachia symbiosis by stage-specific dual RNA-seq.

Grote A, Voronin D, Ding T, Twaddle A, Unnasch TR, Lustigman S, Ghedin E.

PLoS Negl Trop Dis. 2017 Mar 30;11(3):e0005357. doi: 10.1371/journal.pntd.0005357. eCollection 2017 Mar.

13.

Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia.

Kerr PJ, Cattadori IM, Rogers MB, Fitch A, Geber A, Liu J, Sim DG, Boag B, Eden JS, Ghedin E, Read AF, Holmes EC.

PLoS Pathog. 2017 Mar 2;13(3):e1006252. doi: 10.1371/journal.ppat.1006252. eCollection 2017 Mar.

14.

Lessons from the genomes and transcriptomes of filarial nematodes.

Grote A, Lustigman S, Ghedin E.

Mol Biochem Parasitol. 2017 Jul;215:23-29. doi: 10.1016/j.molbiopara.2017.01.004. Epub 2017 Jan 23. Review.

PMID:
28126543
15.

Stage-Specific Transcriptome and Proteome Analyses of the Filarial Parasite Onchocerca volvulus and Its Wolbachia Endosymbiont.

Bennuru S, Cotton JA, Ribeiro JM, Grote A, Harsha B, Holroyd N, Mhashilkar A, Molina DM, Randall AZ, Shandling AD, Unnasch TR, Ghedin E, Berriman M, Lustigman S, Nutman TB.

MBio. 2016 Nov 23;7(6). pii: e02028-16. doi: 10.1128/mBio.02028-16.

16.

The genome of Onchocerca volvulus, agent of river blindness.

Cotton JA, Bennuru S, Grote A, Harsha B, Tracey A, Beech R, Doyle SR, Dunn M, Hotopp JC, Holroyd N, Kikuchi T, Lambert O, Mhashilkar A, Mutowo P, Nursimulu N, Ribeiro JM, Rogers MB, Stanley E, Swapna LS, Tsai IJ, Unnasch TR, Voronin D, Parkinson J, Nutman TB, Ghedin E, Berriman M, Lustigman S.

Nat Microbiol. 2016 Nov 21;2:16216. doi: 10.1038/nmicrobiol.2016.216.

17.

Evolution and Cryo-electron Microscopy Capsid Structure of a North American Bat Adenovirus and Its Relationship to Other Mastadenoviruses.

Hackenbrack N, Rogers MB, Ashley RE, Keel MK, Kubiski SV, Bryan JA, Ghedin E, Holmes EC, Hafenstein SL, Allison AB.

J Virol. 2017 Jan 3;91(2). pii: e01504-16. doi: 10.1128/JVI.01504-16. Print 2017 Jan 15.

18.

Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials.

Postler TS, Clawson AN, Amarasinghe GK, Basler CF, Bavari S, Benko M, Blasdell KR, Briese T, Buchmeier MJ, Bukreyev A, Calisher CH, Chandran K, Charrel R, Clegg CS, Collins PL, Juan Carlos T, Derisi JL, Dietzgen RG, Dolnik O, Dürrwald R, Dye JM, Easton AJ, Emonet S, Formenty P, Fouchier RAM, Ghedin E, Gonzalez JP, Harrach B, Hewson R, Horie M, Jiang D, Kobinger G, Kondo H, Kropinski AM, Krupovic M, Kurath G, Lamb RA, Leroy EM, Lukashevich IS, Maisner A, Mushegian AR, Netesov SV, Nowotny N, Patterson JL, Payne SL, PaWeska JT, Peters CJ, Radoshitzky SR, Rima BK, Romanowski V, Rubbenstroth D, Sabanadzovic S, Sanfaçon H, Salvato MS, Schwemmle M, Smither SJ, Stenglein MD, Stone DM, Takada A, Tesh RB, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Volchkov VE, Wahl-Jensen V, Walker PJ, Wang LF, Varsani A, Whitfield AE, Zerbini FM, Kuhn JH.

Syst Biol. 2017 May 1;66(3):463-473. doi: 10.1093/sysbio/syw096.

19.

The lung mycobiome in the next-generation sequencing era.

Tipton L, Ghedin E, Morris A.

Virulence. 2017 Apr 3;8(3):334-341. doi: 10.1080/21505594.2016.1235671. Epub 2016 Sep 29. Review.

20.

Network inference from multimodal data: A review of approaches from infectious disease transmission.

Ray B, Ghedin E, Chunara R.

J Biomed Inform. 2016 Dec;64:44-54. doi: 10.1016/j.jbi.2016.09.004. Epub 2016 Sep 6. Review.

21.

Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype.

Segal LN, Clemente JC, Tsay JC, Koralov SB, Keller BC, Wu BG, Li Y, Shen N, Ghedin E, Morris A, Diaz P, Huang L, Wikoff WR, Ubeda C, Artacho A, Rom WN, Sterman DH, Collman RG, Blaser MJ, Weiden MD.

Nat Microbiol. 2016 Apr 4;1:16031. doi: 10.1038/nmicrobiol.2016.31.

22.

Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection.

Morris A, Paulson JN, Talukder H, Tipton L, Kling H, Cui L, Fitch A, Pop M, Norris KA, Ghedin E.

Microbiome. 2016 Jul 8;4(1):38. doi: 10.1186/s40168-016-0183-0.

23.

Taxonomy of the order Mononegavirales: update 2016.

Afonso CL, Amarasinghe GK, Bányai K, Bào Y, Basler CF, Bavari S, Bejerman N, Blasdell KR, Briand FX, Briese T, Bukreyev A, Calisher CH, Chandran K, Chéng J, Clawson AN, Collins PL, Dietzgen RG, Dolnik O, Domier LL, Dürrwald R, Dye JM, Easton AJ, Ebihara H, Farkas SL, Freitas-Astúa J, Formenty P, Fouchier RA, Fù Y, Ghedin E, Goodin MM, Hewson R, Horie M, Hyndman TH, Jiāng D, Kitajima EW, Kobinger GP, Kondo H, Kurath G, Lamb RA, Lenardon S, Leroy EM, Li CX, Lin XD, Liú L, Longdon B, Marton S, Maisner A, Mühlberger E, Netesov SV, Nowotny N, Patterson JL, Payne SL, Paweska JT, Randall RE, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Shi M, Smither SJ, Stenglein MD, Stone DM, Takada A, Terregino C, Tesh RB, Tian JH, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Verbeek M, Volchkov VE, Wahl-Jensen V, Walsh JA, Walker PJ, Wang D, Wang LF, Wetzel T, Whitfield AE, Xiè JT, Yuen KY, Zhang YZ, Kuhn JH.

Arch Virol. 2016 Aug;161(8):2351-60. doi: 10.1007/s00705-016-2880-1. Epub 2016 May 23.

24.

Glucose and Glycogen Metabolism in Brugia malayi Is Associated with Wolbachia Symbiont Fitness.

Voronin D, Bachu S, Shlossman M, Unnasch TR, Ghedin E, Lustigman S.

PLoS One. 2016 Apr 14;11(4):e0153812. doi: 10.1371/journal.pone.0153812. eCollection 2016.

25.

Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection.

Cribbs SK, Uppal K, Li S, Jones DP, Huang L, Tipton L, Fitch A, Greenblatt RM, Kingsley L, Guidot DM, Ghedin E, Morris A.

Microbiome. 2016 Jan 20;4:3. doi: 10.1186/s40168-016-0147-4.

26.

Quantifying influenza virus diversity and transmission in humans.

Poon LL, Song T, Rosenfeld R, Lin X, Rogers MB, Zhou B, Sebra R, Halpin RA, Guan Y, Twaddle A, DePasse JV, Stockwell TB, Wentworth DE, Holmes EC, Greenbaum B, Peiris JS, Cowling BJ, Ghedin E.

Nat Genet. 2016 Feb;48(2):195-200. doi: 10.1038/ng.3479. Epub 2016 Jan 4.

27.

The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles.

Tarabichi Y, Li K, Hu S, Nguyen C, Wang X, Elashoff D, Saira K, Frank B, Bihan M, Ghedin E, Methé BA, Deng JC.

Microbiome. 2015 Dec 15;3:74. doi: 10.1186/s40168-015-0133-2.

28.

Development of high-yield influenza A virus vaccine viruses.

Ping J, Lopes TJ, Nidom CA, Ghedin E, Macken CA, Fitch A, Imai M, Maher EA, Neumann G, Kawaoka Y.

Nat Commun. 2015 Sep 2;6:8148. doi: 10.1038/ncomms9148.

29.

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals.

Beck JM, Schloss PD, Venkataraman A, Twigg H 3rd, Jablonski KA, Bushman FD, Campbell TB, Charlson ES, Collman RG, Crothers K, Curtis JL, Drews KL, Flores SC, Fontenot AP, Foulkes MA, Frank I, Ghedin E, Huang L, Lynch SV, Morris A, Palmer BE, Schmidt TM, Sodergren E, Weinstock GM, Young VB; Lung HIV Microbiome Project.

Am J Respir Crit Care Med. 2015 Dec 1;192(11):1335-44. doi: 10.1164/rccm.201501-0128OC.

30.

Viral evolution: beyond drift and shift.

Greenbaum BD, Ghedin E.

Curr Opin Microbiol. 2015 Aug;26:109-15. doi: 10.1016/j.mib.2015.06.015. Epub 2015 Jul 17. Review.

PMID:
26189048
31.

Evolution of Influenza B Virus in Kuala Lumpur, Malaysia, between 1995 and 2008.

Sam IC, Su YC, Chan YF, Nor'E SS, Hassan A, Jafar FL, Joseph U, Halpin RA, Ghedin E, Hooi PS, Fourment M, Hassan H, AbuBakar S, Wentworth DE, Smith GJ.

J Virol. 2015 Sep;89(18):9689-92. doi: 10.1128/JVI.00708-15. Epub 2015 Jul 1.

32.

Identification of mammalian-adapting mutations in the polymerase complex of an avian H5N1 influenza virus.

Taft AS, Ozawa M, Fitch A, Depasse JV, Halfmann PJ, Hill-Batorski L, Hatta M, Friedrich TC, Lopes TJ, Maher EA, Ghedin E, Macken CA, Neumann G, Kawaoka Y.

Nat Commun. 2015 Jun 17;6:7491. doi: 10.1038/ncomms8491.

33.

Functional analysis of microRNA activity in Brugia malayi.

Liu C, Voronin D, Poole CB, Bachu S, Rogers MB, Jin J, Ghedin E, Lustigman S, McReynolds LA, Unnasch TR.

Int J Parasitol. 2015 Aug;45(9-10):579-83. doi: 10.1016/j.ijpara.2015.04.004. Epub 2015 May 22.

34.

Genetic diversity of the 2013-14 human isolates of influenza H7N9 in China.

Farooqui A, Leon AJ, Huang L, Wu S, Cai Y, Lin P, Chen W, Fang X, Zeng T, Liu Y, Zhang L, Su T, Chen W, Ghedin E, Zhu H, Guan Y, Kelvin DJ.

BMC Infect Dis. 2015 Feb 28;15:109. doi: 10.1186/s12879-015-0829-8.

35.

Intrahost dynamics of antiviral resistance in influenza A virus reflect complex patterns of segment linkage, reassortment, and natural selection.

Rogers MB, Song T, Sebra R, Greenbaum BD, Hamelin ME, Fitch A, Twaddle A, Cui L, Holmes EC, Boivin G, Ghedin E.

MBio. 2015 Apr 7;6(2). pii: e02464-14. doi: 10.1128/mBio.02464-14.

36.

Myxoma virus and the Leporipoxviruses: an evolutionary paradigm.

Kerr PJ, Liu J, Cattadori I, Ghedin E, Read AF, Holmes EC.

Viruses. 2015 Mar 6;7(3):1020-61. doi: 10.3390/v7031020. Review.

37.

Topographic diversity of the respiratory tract mycobiome and alteration in HIV and lung disease.

Cui L, Lucht L, Tipton L, Rogers MB, Fitch A, Kessinger C, Camp D, Kingsley L, Leo N, Greenblatt RM, Fong S, Stone S, Dermand JC, Kleerup EC, Huang L, Morris A, Ghedin E.

Am J Respir Crit Care Med. 2015 Apr 15;191(8):932-42. doi: 10.1164/rccm.201409-1583OC.

38.

Potential involvement of Brugia malayi cysteine proteases in the maintenance of the endosymbiotic relationship with Wolbachia.

Lustigman S, Melnikow E, Anand SB, Contreras A, Nandi V, Liu J, Bell A, Unnasch TR, Rogers MB, Ghedin E.

Int J Parasitol Drugs Drug Resist. 2014 Aug 26;4(3):267-77. doi: 10.1016/j.ijpddr.2014.08.001. eCollection 2014 Dec.

39.

Cyclic avian mass mortality in the northeastern United States is associated with a novel orthomyxovirus.

Allison AB, Ballard JR, Tesh RB, Brown JD, Ruder MG, Keel MK, Munk BA, Mickley RM, Gibbs SE, Travassos da Rosa AP, Ellis JC, Ip HS, Shearn-Bochsler VI, Rogers MB, Ghedin E, Holmes EC, Parrish CR, Dwyer C.

J Virol. 2015 Jan 15;89(2):1389-403. doi: 10.1128/JVI.02019-14. Epub 2014 Nov 12.

40.

Identification and analysis of ingi-related retroposons in the trypanosomatid genomes.

Bringaud F, Rogers M, Ghedin E.

Methods Mol Biol. 2015;1201:109-22. doi: 10.1007/978-1-4939-1438-8_6.

PMID:
25388110
41.

A large-scale immuno-epidemiological simulation of influenza A epidemics.

Lukens S, DePasse J, Rosenfeld R, Ghedin E, Mochan E, Brown ST, Grefenstette J, Burke DS, Swigon D, Clermont G.

BMC Public Health. 2014 Sep 29;14:1019. doi: 10.1186/1471-2458-14-1019.

42.

The microbiome and the lung.

Cui L, Morris A, Huang L, Beck JM, Twigg HL 3rd, von Mutius E, Ghedin E.

Ann Am Thorac Soc. 2014 Aug;11 Suppl 4:S227-32. doi: 10.1513/AnnalsATS.201402-052PL. Review.

43.

Emerging and resistant infections.

Clancy CJ, Kalil AC, Fowler VG, Ghedin E, Kolls JK, Nguyen MH.

Ann Am Thorac Soc. 2014 Aug;11 Suppl 4:S193-200. doi: 10.1513/AnnalsATS.201402-069PL. Review.

44.

Panning for molecular gold in whipworm genomes.

Ghedin E.

Nat Genet. 2014 Jul;46(7):661-3. doi: 10.1038/ng.3018.

PMID:
24965726
45.

Mesoniviruses are mosquito-specific viruses with extensive geographic distribution and host range.

Vasilakis N, Guzman H, Firth C, Forrester NL, Widen SG, Wood TG, Rossi SL, Ghedin E, Popov V, Blasdell KR, Walker PJ, Tesh RB.

Virol J. 2014 May 20;11:97. doi: 10.1186/1743-422X-11-97.

46.

Whole genome analysis of sierra nevada virus, a novel mononegavirus in the family nyamiviridae.

Rogers MB, Cui L, Fitch A, Popov V, Travassos da Rosa AP, Vasilakis N, Tesh RB, Ghedin E.

Am J Trop Med Hyg. 2014 Jul;91(1):159-64. doi: 10.4269/ajtmh.14-0076. Epub 2014 Apr 28.

47.

Deliberate attenuation of chikungunya virus by adaptation to heparan sulfate-dependent infectivity: a model for rational arboviral vaccine design.

Gardner CL, Hritz J, Sun C, Vanlandingham DL, Song TY, Ghedin E, Higgs S, Klimstra WB, Ryman KD.

PLoS Negl Trop Dis. 2014 Feb 20;8(2):e2719. doi: 10.1371/journal.pntd.0002719. eCollection 2014 Feb.

48.

Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise.

Twigg HL 3rd, Morris A, Ghedin E, Curtis JL, Huffnagle GB, Crothers K, Campbell TB, Flores SC, Fontenot AP, Beck JM, Huang L, Lynch S, Knox KS, Weinstock G; Lung HIV Microbiome Project.

Lancet Respir Med. 2013 Jul;1(5):354-6. doi: 10.1016/S2213-2600(13)70117-6. Epub 2013 Jul 8. No abstract available.

PMID:
24429191
49.

Arboretum and Puerto Almendras viruses: two novel rhabdoviruses isolated from mosquitoes in Peru.

Vasilakis N, Castro-Llanos F, Widen SG, Aguilar PV, Guzman H, Guevara C, Fernandez R, Auguste AJ, Wood TG, Popov V, Mundal K, Ghedin E, Kochel TJ, Holmes EC, Walker PJ, Tesh RB.

J Gen Virol. 2014 Apr;95(Pt 4):787-92. doi: 10.1099/vir.0.058685-0. Epub 2014 Jan 13.

50.

Genome scale evolution of myxoma virus reveals host-pathogen adaptation and rapid geographic spread.

Kerr PJ, Rogers MB, Fitch A, Depasse JV, Cattadori IM, Twaddle AC, Hudson PJ, Tscharke DC, Read AF, Holmes EC, Ghedin E.

J Virol. 2013 Dec;87(23):12900-15. doi: 10.1128/JVI.02060-13. Epub 2013 Sep 25.

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