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Items: 22

1.

Force-detected nanoscale absorption spectroscopy in water at room temperature using an optical trap.

Parobek A, Black JW, Kamenetska M, Ganim Z.

J Chem Phys. 2018 Apr 14;148(14):144201. doi: 10.1063/1.5017853.

PMID:
29655351
2.

Mechanically switching single-molecule fluorescence of GFP by unfolding and refolding.

Ganim Z, Rief M.

Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):11052-11056. doi: 10.1073/pnas.1704937114. Epub 2017 Oct 3.

3.

An Optical Tweezers Platform for Single Molecule Force Spectroscopy in Organic Solvents.

Black JW, Kamenetska M, Ganim Z.

Nano Lett. 2017 Nov 8;17(11):6598-6605. doi: 10.1021/acs.nanolett.7b02413. Epub 2017 Oct 17.

PMID:
28972764
4.

Correction: Insulin dimer dissociation and unfolding revealed by amide I two-dimensional infrared spectroscopy.

Ganim Z, Jones KC, Tokmakoff A.

Phys Chem Chem Phys. 2017 Jul 19;19(28):18773. doi: 10.1039/c7cp90151h.

PMID:
28678231
5.

Octave-spanning mid-infrared pulses by plasma generation in air pumped with an Yb:KGW source.

Huang J, Parobek A, Ganim Z.

Opt Lett. 2016 Nov 1;41(21):4855-4858. doi: 10.1364/OL.41.004855.

6.

Single-molecule vibrational spectroscopy adds structural resolution to the optical trap.

Ganim Z.

Biophys J. 2013 Jan 8;104(1):4-5. doi: 10.1016/j.bpj.2012.09.044. Epub 2013 Jan 8.

7.

Psychiatric disorders and substance use in homeless youth: a preliminary comparison of san francisco and chicago.

Quimby EG, Edidin JP, Ganim Z, Gustafson E, Hunter SJ, Karnik NS.

Behav Sci (Basel). 2012 Aug 30;2(3):186-94. doi: 10.3390/bs2030186. eCollection 2012 Sep.

8.

Solvent and conformation dependence of amide I vibrations in peptides and proteins containing proline.

Roy S, Lessing J, Meisl G, Ganim Z, Tokmakoff A, Knoester J, Jansen TL.

J Chem Phys. 2011 Dec 21;135(23):234507. doi: 10.1063/1.3665417.

PMID:
22191886
9.

The mental and physical health of homeless youth: a literature review.

Edidin JP, Ganim Z, Hunter SJ, Karnik NS.

Child Psychiatry Hum Dev. 2012 Jun;43(3):354-75. doi: 10.1007/s10578-011-0270-1. Review.

PMID:
22120422
10.

Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations.

Smith AW, Lessing J, Ganim Z, Peng CS, Tokmakoff A, Roy S, Jansen TL, Knoester J.

J Phys Chem B. 2010 Sep 2;114(34):10913-24. doi: 10.1021/jp104017h.

PMID:
20690697
11.

Insulin dimer dissociation and unfolding revealed by amide I two-dimensional infrared spectroscopy.

Ganim Z, Jones KC, Tokmakoff A.

Phys Chem Chem Phys. 2010 Apr 14;12(14):3579-88. doi: 10.1039/b923515a. Epub 2010 Mar 5. Erratum in: Phys Chem Chem Phys. 2017 Jul 19;19(28):18773.

PMID:
20336256
12.

Heterodyne-detected dispersed vibrational echo spectroscopy.

Jones KC, Ganim Z, Tokmakoff A.

J Phys Chem A. 2009 Dec 24;113(51):14060-6. doi: 10.1021/jp906256s.

PMID:
19938867
13.

Amide I'-II' 2D IR spectroscopy provides enhanced protein secondary structural sensitivity.

Deflores LP, Ganim Z, Nicodemus RA, Tokmakoff A.

J Am Chem Soc. 2009 Mar 11;131(9):3385-91. doi: 10.1021/ja8094922.

PMID:
19256572
14.

Amide I two-dimensional infrared spectroscopy of proteins.

Ganim Z, Chung HS, Smith AW, Deflores LP, Jones KC, Tokmakoff A.

Acc Chem Res. 2008 Mar;41(3):432-41. doi: 10.1021/ar700188n. Epub 2008 Feb 21. Review.

PMID:
18288813
15.

Transient 2D IR spectroscopy of ubiquitin unfolding dynamics.

Chung HS, Ganim Z, Jones KC, Tokmakoff A.

Proc Natl Acad Sci U S A. 2007 Sep 4;104(36):14237-42. Epub 2007 Jun 5.

16.

The anharmonic vibrational potential and relaxation pathways of the amide I and II modes of N-methylacetamide.

DeFlores LP, Ganim Z, Ackley SF, Chung HS, Tokmakoff A.

J Phys Chem B. 2006 Sep 28;110(38):18973-80.

PMID:
16986892
17.

Residual native structure in a thermally denatured beta-hairpin.

Smith AW, Chung HS, Ganim Z, Tokmakoff A.

J Phys Chem B. 2005 Sep 15;109(36):17025-7.

PMID:
16853169
18.

Spectral signatures of heterogeneous protein ensembles revealed by MD Simulations of 2DIR spectra.

Ganim Z, Tokmakoff A.

Biophys J. 2006 Oct 1;91(7):2636-46. Epub 2006 Jul 14.

19.

Conformational changes during the nanosecond-to-millisecond unfolding of ubiquitin.

Chung HS, Khalil M, Smith AW, Ganim Z, Tokmakoff A.

Proc Natl Acad Sci U S A. 2005 Jan 18;102(3):612-7. Epub 2005 Jan 3.

20.

Resonance Raman analysis of the mechanism of energy storage and chromophore distortion in the primary visual photoproduct.

Yan EC, Ganim Z, Kazmi MA, Chang BS, Sakmar TP, Mathies RA.

Biochemistry. 2004 Aug 31;43(34):10867-76.

21.

Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin.

Yan EC, Kazmi MA, Ganim Z, Hou JM, Pan D, Chang BS, Sakmar TP, Mathies RA.

Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9262-7. Epub 2003 Jun 30.

22.

Time-resolved resonance Raman analysis of chromophore structural changes in the formation and decay of rhodopsin's BSI intermediate.

Pan D, Ganim Z, Kim JE, Verhoeven MA, Lugtenburg J, Mathies RA.

J Am Chem Soc. 2002 May 1;124(17):4857-64.

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