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Genetic footprint of population fragmentation and contemporary collapse in a freshwater cetacean.

Chen M, Fontaine MC, Ben Chehida Y, Zheng J, Labbé F, Mei Z, Hao Y, Wang K, Wu M, Zhao Q, Wang D.

Sci Rep. 2017 Oct 31;7(1):14449. doi: 10.1038/s41598-017-14812-z.


Genetic signatures of variation in population size in a native fungal pathogen after the recent massive plantation of its host tree.

Labbé F, Fontaine MC, Robin C, Dutech C.

Heredity (Edinb). 2017 Dec;119(6):402-410. doi: 10.1038/hdy.2017.58. Epub 2017 Sep 20.


Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient.

Ryan SF, Fontaine MC, Scriber JM, Pfrender ME, O'Neil ST, Hellmann JJ.

Mol Ecol. 2017 Sep;26(18):4725-4742. doi: 10.1111/mec.14236. Epub 2017 Aug 21.


Mixing of porpoise ecotypes in southwestern UK waters revealed by genetic profiling.

Fontaine MC, Thatcher O, Ray N, Piry S, Brownlow A, Davison NJ, Jepson P, Deaville R, Goodman SJ.

R Soc Open Sci. 2017 Mar 1;4(3):160992. doi: 10.1098/rsos.160992. eCollection 2017 Mar.


Harbour Porpoises, Phocoena phocoena, in the Mediterranean Sea and Adjacent Regions: Biogeographic Relicts of the Last Glacial Period.

Fontaine MC.

Adv Mar Biol. 2016;75:333-358. doi: 10.1016/bs.amb.2016.08.006. Epub 2016 Sep 28. Review.


Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing.

Love RR, Steele AM, Coulibaly MB, Traore SF, Emrich SJ, Fontaine MC, Besansky NJ.

Mol Ecol. 2016 Dec;25(23):5889-5906. doi: 10.1111/mec.13888. Epub 2016 Nov 9.


Spatial variation in the accumulation of POPs and mercury in bottlenose dolphins of the Lower Florida Keys and the coastal Everglades (South Florida).

Damseaux F, Kiszka JJ, Heithaus MR, Scholl G, Eppe G, Thomé JP, Lewis J, Hao W, Fontaine MC, Das K.

Environ Pollut. 2017 Jan;220(Pt A):577-587. doi: 10.1016/j.envpol.2016.10.005. Epub 2016 Oct 11.


Vaccination with a live multi-gene deletion strain protects horses against virulent challenge with Streptococcus equi.

Robinson C, Heather Z, Slater J, Potts N, Steward KF, Maskell DJ, Fontaine MC, Lee JJ, Smith K, Waller AS.

Vaccine. 2015 Feb 25;33(9):1160-7. doi: 10.1016/j.vaccine.2015.01.019. Epub 2015 Jan 15.


Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, Brockman AI, Burkot TR, Burt A, Chan CS, Chauve C, Chiu JC, Christensen M, Costantini C, Davidson VL, Deligianni E, Dottorini T, Dritsou V, Gabriel SB, Guelbeogo WM, Hall AB, Han MV, Hlaing T, Hughes DS, Jenkins AM, Jiang X, Jungreis I, Kakani EG, Kamali M, Kemppainen P, Kennedy RC, Kirmitzoglou IK, Koekemoer LL, Laban N, Langridge N, Lawniczak MK, Lirakis M, Lobo NF, Lowy E, MacCallum RM, Mao C, Maslen G, Mbogo C, McCarthy J, Michel K, Mitchell SN, Moore W, Murphy KA, Naumenko AN, Nolan T, Novoa EM, O'Loughlin S, Oringanje C, Oshaghi MA, Pakpour N, Papathanos PA, Peery AN, Povelones M, Prakash A, Price DP, Rajaraman A, Reimer LJ, Rinker DC, Rokas A, Russell TL, Sagnon N, Sharakhova MV, Shea T, Simão FA, Simard F, Slotman MA, Somboon P, Stegniy V, Struchiner CJ, Thomas GW, Tojo M, Topalis P, Tubio JM, Unger MF, Vontas J, Walton C, Wilding CS, Willis JH, Wu YC, Yan G, Zdobnov EM, Zhou X, Catteruccia F, Christophides GK, Collins FH, Cornman RS, Crisanti A, Donnelly MJ, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Hansen IA, Howell PI, Kafatos FC, Kellis M, Lawson D, Louis C, Luckhart S, Muskavitch MA, Ribeiro JM, Riehle MA, Sharakhov IV, Tu Z, Zwiebel LJ, Besansky NJ.

Science. 2015 Jan 2;347(6217):1258522. doi: 10.1126/science.1258522. Epub 2014 Nov 27.


Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics.

Fontaine MC, Pease JB, Steele A, Waterhouse RM, Neafsey DE, Sharakhov IV, Jiang X, Hall AB, Catteruccia F, Kakani E, Mitchell SN, Wu YC, Smith HA, Love RR, Lawniczak MK, Slotman MA, Emrich SJ, Hahn MW, Besansky NJ.

Science. 2015 Jan 2;347(6217):1258524. doi: 10.1126/science.1258524. Epub 2014 Nov 27.


Genomic comparison of virulent and non-virulent Streptococcus agalactiae in fish.

Delannoy CM, Zadoks RN, Crumlish M, Rodgers D, Lainson FA, Ferguson HW, Turnbull J, Fontaine MC.

J Fish Dis. 2016 Jan;39(1):13-29. doi: 10.1111/jfd.12319. Epub 2014 Nov 15.


Ecological opportunities and specializations shaped genetic divergence in a highly mobile marine top predator.

Louis M, Fontaine MC, Spitz J, Schlund E, Dabin W, Deaville R, Caurant F, Cherel Y, Guinet C, Simon-Bouhet B.

Proc Biol Sci. 2014 Nov 22;281(1795). pii: 20141558. doi: 10.1098/rspb.2014.1558.


Postglacial climate changes and rise of three ecotypes of harbour porpoises, Phocoena phocoena, in western Palearctic waters.

Fontaine MC, Roland K, Calves I, Austerlitz F, Palstra FP, Tolley KA, Ryan S, Ferreira M, Jauniaux T, Llavona A, Öztürk B, Öztürk AA, Ridoux V, Rogan E, Sequeira M, Siebert U, Vikingsson GA, Borrell A, Michaux JR, Aguilar A.

Mol Ecol. 2014 Jul;23(13):3306-21. doi: 10.1111/mec.12817. Epub 2014 Jun 19.


Draft Genome Sequence of Pasteurella multocida A:3 Strain 671/90.

Lainson FA, Dagleish MP, Fontaine MC, Bayne C, Hodgson JC.

Genome Announc. 2013 Oct 3;1(5). pii: e00803-13. doi: 10.1128/genomeA.00803-13.


Strain-specific pathogenicity of putative host-adapted and nonadapted strains of Streptococcus uberis in dairy cattle.

Tassi R, McNeilly TN, Fitzpatrick JL, Fontaine MC, Reddick D, Ramage C, Lutton M, Schukken YH, Zadoks RN.

J Dairy Sci. 2013 Aug;96(8):5129-45. doi: 10.3168/jds.2013-6741. Epub 2013 Jun 13.


The evolution of the Anopheles 16 genomes project.

Neafsey DE, Christophides GK, Collins FH, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Howell PI, Kafatos FC, Lawson D, Muskavitch MA, Waterhouse RM, Williams LJ, Besansky NJ.

G3 (Bethesda). 2013 Jul 8;3(7):1191-4. doi: 10.1534/g3.113.006247.


Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogen Plasmopara viticola.

Fontaine MC, Austerlitz F, Giraud T, Labbé F, Papura D, Richard-Cervera S, Delmotte F.

Mol Ecol. 2013 May;22(10):2771-86. doi: 10.1111/mec.12293. Epub 2013 Mar 18.


Human Streptococcus agalactiae strains in aquatic mammals and fish.

Delannoy CM, Crumlish M, Fontaine MC, Pollock J, Foster G, Dagleish MP, Turnbull JF, Zadoks RN.

BMC Microbiol. 2013 Feb 18;13:41. doi: 10.1186/1471-2180-13-41.


History of the invasion of the anther smut pathogen on Silene latifolia in North America.

Fontaine MC, Gladieux P, Hood ME, Giraud T.

New Phytol. 2013 May;198(3):946-56. doi: 10.1111/nph.12177. Epub 2013 Feb 13.


Barriers to gene flow in the marine environment: insights from two common intertidal limpet species of the Atlantic and Mediterranean.

Sá-Pinto A, Branco MS, Alexandrino PB, Fontaine MC, Baird SJ.

PLoS One. 2012;7(12):e50330. doi: 10.1371/journal.pone.0050330. Epub 2012 Dec 11.


Polymorphism pattern at a miniature inverted-repeat transposable element locus downstream of the domestication gene Teosinte-branched1 in wild and domesticated pearl millet.

Dussert Y, Remigereau MS, Fontaine MC, Snirc A, Lakis G, Stoeckel S, Langin T, Sarr A, Robert T.

Mol Ecol. 2013 Jan;22(2):327-40. doi: 10.1111/mec.12139. Epub 2012 Dec 3.


Comparative molecular analysis of ovine and bovine Streptococcus uberis isolates.

Gilchrist TL, Smith DG, Fitzpatrick JL, Zadoks RN, Fontaine MC.

J Dairy Sci. 2013 Feb;96(2):962-70. doi: 10.3168/jds.2012-5705. Epub 2012 Nov 29.


Draft genome sequence of a nonhemolytic fish-pathogenic Streptococcus agalactiae strain.

Delannoy CM, Zadoks RN, Lainson FA, Ferguson HW, Crumlish M, Turnbull JF, Fontaine MC.

J Bacteriol. 2012 Nov;194(22):6341-2. doi: 10.1128/JB.01552-12.


A European melting pot of harbour porpoise in the French Atlantic coasts inferred from mitochondrial and nuclear data.

Alfonsi E, Hassani S, Carpentier FG, Le Clec'h JY, Dabin W, Van Canneyt O, Fontaine MC, Jung JL.

PLoS One. 2012;7(9):e44425. doi: 10.1371/journal.pone.0044425. Epub 2012 Sep 12.


History of expansion and anthropogenic collapse in a top marine predator of the Black Sea estimated from genetic data.

Fontaine MC, Snirc A, Frantzis A, Koutrakis E, Oztürk B, Oztürk AA, Austerlitz F.

Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):E2569-76. Epub 2012 Sep 4.


Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in Scotland and Australia, respectively.

Pethick FE, Lainson AF, Yaga R, Flockhart A, Smith DG, Donachie W, Cerdeira LT, Silva A, Bol E, Lopes TS, Barbosa MS, Pinto AC, dos Santos AR, Soares SC, Almeida SS, Guimaraes LC, Aburjaile FF, Abreu VA, Ribeiro D, Fiaux KK, Diniz CA, Barbosa EG, Pereira UP, Hassan SS, Ali A, Bakhtiar SM, Dorella FA, Carneiro AR, Ramos RT, Rocha FS, Schneider MP, Miyoshi A, Azevedo V, Fontaine MC.

J Bacteriol. 2012 Sep;194(17):4736-7. doi: 10.1128/JB.00918-12.


Complete genome sequence of Corynebacterium pseudotuberculosis strain 1/06-A, isolated from a horse in North America.

Pethick FE, Lainson AF, Yaga R, Flockhart A, Smith DG, Donachie W, Cerdeira LT, Silva A, Bol E, Lopes TS, Barbosa MS, Pinto AC, Dos Santos AR, Soares SC, Almeida SS, Guimaraes LC, Aburjaile FF, Abreu VA, Ribeiro D, Fiaux KK, Diniz CA, Barbosa EG, Pereira UP, Hassan SS, Ali A, Bakhtiar SM, Dorella FA, Carneiro AR, Ramos RT, Rocha FS, Schneider MP, Miyoshi A, Azevedo V, Fontaine MC.

J Bacteriol. 2012 Aug;194(16):4476. doi: 10.1128/JB.00922-12.


Different biogeographic patterns of prokaryotes and microbial eukaryotes in epilithic biofilms.

Ragon M, Fontaine MC, Moreira D, López-García P.

Mol Ecol. 2012 Aug;21(15):3852-68. doi: 10.1111/j.1365-294X.2012.05659.x. Epub 2012 Jun 11.


Genetic structure in a dynamic baboon hybrid zone corroborates behavioural observations in a hybrid population.

Charpentier MJ, Fontaine MC, Cherel E, Renoult JP, Jenkins T, Benoit L, Barthès N, Alberts SC, Tung J.

Mol Ecol. 2012 Feb;21(3):715-31. doi: 10.1111/j.1365-294X.2011.05302.x. Epub 2011 Oct 11.


Host-response patterns of intramammary infections in dairy cows.

Schukken YH, Günther J, Fitzpatrick J, Fontaine MC, Goetze L, Holst O, Leigh J, Petzl W, Schuberth HJ, Sipka A, Smith DG, Quesnell R, Watts J, Yancey R, Zerbe H, Gurjar A, Zadoks RN, Seyfert HM; members of the Pfizer mastitis research consortium.

Vet Immunol Immunopathol. 2011 Dec 15;144(3-4):270-89. doi: 10.1016/j.vetimm.2011.08.022. Epub 2011 Sep 10. Review.


Cereal domestication and evolution of branching: evidence for soft selection in the Tb1 orthologue of pearl millet (Pennisetum glaucum [L.] R. Br.).

Remigereau MS, Lakis G, Rekima S, Leveugle M, Fontaine MC, Langin T, Sarr A, Robert T.

PLoS One. 2011;6(7):e22404. doi: 10.1371/journal.pone.0022404. Epub 2011 Jul 22.


Targeted allele replacement mutagenesis of Corynebacterium pseudotuberculosis.

Walker CA, Donachie W, Smith DG, Fontaine MC.

Appl Environ Microbiol. 2011 May;77(10):3532-5. doi: 10.1128/AEM.01740-10. Epub 2011 Mar 18.


Temporal isolation explains host-related genetic differentiation in a group of widespread mycoparasitic fungi.

Kiss L, Pintye A, Kovács GM, Jankovics T, Fontaine MC, Harvey N, Xu X, Nicot PC, Bardin M, Shykoff JA, Giraud T.

Mol Ecol. 2011 Apr;20(7):1492-507. doi: 10.1111/j.1365-294X.2011.05007.x. Epub 2011 Jan 25.


Glacial refugia in pathogens: European genetic structure of anther smut pathogens on Silene latifolia and Silene dioica.

Vercken E, Fontaine MC, Gladieux P, Hood ME, Jonot O, Giraud T.

PLoS Pathog. 2010 Dec 16;6(12):e1001229. doi: 10.1371/journal.ppat.1001229.


Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact.

Gladieux P, Vercken E, Fontaine MC, Hood ME, Jonot O, Couloux A, Giraud T.

Mol Biol Evol. 2011 Jan;28(1):459-71. doi: 10.1093/molbev/msq235. Epub 2010 Sep 13.


Chromosomal inversions, natural selection and adaptation in the malaria vector Anopheles funestus.

Ayala D, Fontaine MC, Cohuet A, Fontenille D, Vitalis R, Simard F.

Mol Biol Evol. 2011 Jan;28(1):745-58. doi: 10.1093/molbev/msq248. Epub 2010 Sep 13.


Genetic and historic evidence for climate-driven population fragmentation in a top cetacean predator: the harbour porpoises in European water.

Fontaine MC, Tolley KA, Michaux JR, Birkun A Jr, Ferreira M, Jauniaux T, Llavona A, Oztürk B, Oztürk AA, Ridoux V, Rogan E, Sequeira M, Bouquegneau JM, Baird SJ.

Proc Biol Sci. 2010 Sep 22;277(1695):2829-37. doi: 10.1098/rspb.2010.0412. Epub 2010 May 5.


Finding candidate genes under positive selection in Non-model species: examples of genes involved in host specialization in pathogens.

Aguileta G, Lengelle J, Marthey S, Chiapello H, Rodolphe F, Gendrault A, Yockteng R, Vercken E, Devier B, Fontaine MC, Wincker P, Dossat C, Cruaud C, Couloux A, Giraud T.

Mol Ecol. 2010 Jan;19(2):292-306. doi: 10.1111/j.1365-294X.2009.04454.x. Epub 2009 Dec 8.


A relict bank vole lineage highlights the biogeographic history of the Pyrenean region in Europe.

Deffontaine V, Ledevin R, Fontaine MC, Quéré JP, Renaud S, Libois R, Michaux JR.

Mol Ecol. 2009 Jun;18(11):2489-502. doi: 10.1111/j.1365-294X.2009.04162.x. Epub 2009 Apr 23.


Acute phase protein response in an experimental model of ovine caseous lymphadenitis.

Eckersall PD, Lawson FP, Bence L, Waterston MM, Lang TL, Donachie W, Fontaine MC.

BMC Vet Res. 2007 Dec 19;3:35.


Corynebacterium pseudotuberculosis and its role in ovine caseous lymphadenitis.

Baird GJ, Fontaine MC.

J Comp Pathol. 2007 Nov;137(4):179-210. Epub 2007 Sep 10. Review.


Rise of oceanographic barriers in continuous populations of a cetacean: the genetic structure of harbour porpoises in Old World waters.

Fontaine MC, Baird SJ, Piry S, Ray N, Tolley KA, Duke S, Birkun A Jr, Ferreira M, Jauniaux T, Llavona A, Oztürk B, A Oztürk A, Ridoux V, Rogan E, Sequeira M, Siebert U, Vikingsson GA, Bouquegneau JM, Michaux JR.

BMC Biol. 2007 Jul 25;5:30.


Molecular genotyping of multinational ovine and caprine Corynebacterium pseudotuberculosis isolates using pulsed-field gel electrophoresis.

Connor KM, Fontaine MC, Rudge K, Baird GJ, Donachie W.

Vet Res. 2007 Jul-Aug;38(4):613-23. Epub 2007 Jun 13.


Vaccination confers significant protection of sheep against infection with a virulent United Kingdom strain of Corynebacterium pseudotuberculosis.

Fontaine MC, Baird G, Connor KM, Rudge K, Sales J, Donachie W.

Vaccine. 2006 Aug 14;24(33-34):5986-96. Epub 2006 May 19.


Microbial biofilms: does breaking the microbes' community spirit hold the key to beating persistent mastitis?

Fontaine MC, Smith DG.

Vet J. 2006 May;171(3):387-8. No abstract available.


Use of the surface proteins GapC and Mig of Streptococcus dysgalactiae as potential protective antigens against bovine mastitis.

Bolton A, Song XM, Willson P, Fontaine MC, Potter AA, Perez-Casal J.

Can J Microbiol. 2004 Jun;50(6):423-32.


Investigation of a novel DNase of Streptococcus suis serotype 2.

Fontaine MC, Perez-Casal J, Willson PJ.

Infect Immun. 2004 Feb;72(2):774-81.


Characterization of a bovine lactoferrin binding protein of Streptococcus uberis.

Moshynskyy I, Jiang M, Fontaine MC, Perez-Casal J, Babiuk LA, Potter AA.

Microb Pathog. 2003 Nov;35(5):203-15.


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