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A comparison of publicly available linear MRI stereotaxic registration techniques.

Dadar M, Fonov VS, Collins DL; Alzheimer’s Disease Neuroimaging Initiative.

Neuroimage. 2018 Mar 13;174:191-200. doi: 10.1016/j.neuroimage.2018.03.025. [Epub ahead of print]


Network connectivity determines cortical thinning in early Parkinson's disease progression.

Yau Y, Zeighami Y, Baker TE, Larcher K, Vainik U, Dadar M, Fonov VS, Hagmann P, Griffa A, Mišić B, Collins DL, Dagher A.

Nat Commun. 2018 Jan 2;9(1):12. doi: 10.1038/s41467-017-02416-0.


Multimodal Imaging in Rat Model Recapitulates Alzheimer's Disease Biomarkers Abnormalities.

Parent MJ, Zimmer ER, Shin M, Kang MS, Fonov VS, Mathieu A, Aliaga A, Kostikov A, Do Carmo S, Dea D, Poirier J, Soucy JP, Gauthier S, Cuello AC, Rosa-Neto P.

J Neurosci. 2017 Dec 13;37(50):12263-12271. doi: 10.1523/JNEUROSCI.1346-17.2017. Epub 2017 Nov 2.


PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space.

De Leener B, Fonov VS, Collins DL, Callot V, Stikov N, Cohen-Adad J.

Neuroimage. 2018 Jan 15;165:170-179. doi: 10.1016/j.neuroimage.2017.10.041. Epub 2017 Oct 21.


Dehydroepiandrosterone impacts working memory by shaping cortico-hippocampal structural covariance during development.

Nguyen TV, Wu M, Lew J, Albaugh MD, Botteron KN, Hudziak JJ, Fonov VS, Collins DL, Campbell BC, Booij L, Herba C, Monnier P, Ducharme S, McCracken JT.

Psychoneuroendocrinology. 2017 Dec;86:110-121. doi: 10.1016/j.psyneuen.2017.09.013. Epub 2017 Sep 15.


Identifying incipient dementia individuals using machine learning and amyloid imaging.

Mathotaarachchi S, Pascoal TA, Shin M, Benedet AL, Kang MS, Beaudry T, Fonov VS, Gauthier S, Rosa-Neto P; Alzheimer's Disease Neuroimaging Initiative.

Neurobiol Aging. 2017 Nov;59:80-90. doi: 10.1016/j.neurobiolaging.2017.06.027. Epub 2017 Jul 11.


Performance comparison of 10 different classification techniques in segmenting white matter hyperintensities in aging.

Dadar M, Maranzano J, Misquitta K, Anor CJ, Fonov VS, Tartaglia MC, Carmichael OT, Decarli C, Collins DL; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2017 Aug 15;157:233-249. doi: 10.1016/j.neuroimage.2017.06.009. Epub 2017 Jul 3.


A dataset of multi-contrast population-averaged brain MRI atlases of a Parkinson׳s disease cohort.

Xiao Y, Fonov V, Chakravarty MM, Beriault S, Al Subaie F, Sadikot A, Pike GB, Bertrand G, Collins DL.

Data Brief. 2017 Apr 15;12:370-379. doi: 10.1016/j.dib.2017.04.013. eCollection 2017 Jun.


Validation of a Regression Technique for Segmentation of White Matter Hyperintensities in Alzheimer's Disease.

Dadar M, Pascoal TA, Manitsirikul S, Misquitta K, Fonov VS, Tartaglia MC, Breitner J, Rosa-Neto P, Carmichael OT, Decarli C, Collins DL.

IEEE Trans Med Imaging. 2017 Aug;36(8):1758-1768. doi: 10.1109/TMI.2017.2693978. Epub 2017 Apr 12.


A comparison of accurate automatic hippocampal segmentation methods.

Zandifar A, Fonov V, Coupé P, Pruessner J, Collins DL; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2017 Jul 15;155:383-393. doi: 10.1016/j.neuroimage.2017.04.018. Epub 2017 Apr 9.


Increased Extra-axial Cerebrospinal Fluid in High-Risk Infants Who Later Develop Autism.

Shen MD, Kim SH, McKinstry RC, Gu H, Hazlett HC, Nordahl CW, Emerson RW, Shaw D, Elison JT, Swanson MR, Fonov VS, Gerig G, Dager SR, Botteron KN, Paterson S, Schultz RT, Evans AC, Estes AM, Zwaigenbaum L, Styner MA, Amaral DG, Piven J; Infant Brain Imaging Study Network; Infant Brain Imaging Study Network, The Infant Brain Imaging Study (IBIS) Network is a National Institutes of Health–funded Autism Center of Excellence project and consists of a consortium of eight universities in the United States and Canada, Piven J, Hazlett HC, Chappell C, Dager S, Estes A, Shaw D, Botteron K, McKinstry R, Constantino J, Pruett J, Schultz R, Zwaigenbaum L, Elison J, Evans AC, Collins DL, Pike GB, Fonov V, Kostopoulos P, Das S, Gerig G, Styner M, Gu H.

Biol Psychiatry. 2017 Aug 1;82(3):186-193. doi: 10.1016/j.biopsych.2017.02.1095. Epub 2017 Mar 6.


Monophasic demyelination reduces brain growth in children.

Aubert-Broche B, Weier K, Longoni G, Fonov VS, Bar-Or A, Marrie RA, Yeh EA, Narayanan S, Arnold DL, Verhey LH, Banwell B, Collins DL; Canadian Pediatric Demyelinating Disease Network.

Neurology. 2017 May 2;88(18):1744-1750. doi: 10.1212/WNL.0000000000003884. Epub 2017 Apr 5.


Early brain development in infants at high risk for autism spectrum disorder.

Hazlett HC, Gu H, Munsell BC, Kim SH, Styner M, Wolff JJ, Elison JT, Swanson MR, Zhu H, Botteron KN, Collins DL, Constantino JN, Dager SR, Estes AM, Evans AC, Fonov VS, Gerig G, Kostopoulos P, McKinstry RC, Pandey J, Paterson S, Pruett JR, Schultz RT, Shaw DW, Zwaigenbaum L, Piven J; IBIS Network; Clinical Sites; Data Coordinating Center; Image Processing Core; Statistical Analysis.

Nature. 2017 Feb 15;542(7641):348-351. doi: 10.1038/nature21369.


Cyberinfrastructure for Open Science at the Montreal Neurological Institute.

Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Fonov VS, Milot S, Leppert I, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC.

Front Neuroinform. 2017 Jan 6;10:53. doi: 10.3389/fninf.2016.00053. eCollection 2016.


Sex-specific associations of testosterone with prefrontal-hippocampal development and executive function.

Nguyen TV, Lew J, Albaugh MD, Botteron KN, Hudziak JJ, Fonov VS, Collins DL, Ducharme S, McCracken JT.

Psychoneuroendocrinology. 2017 Feb;76:206-217. doi: 10.1016/j.psyneuen.2016.12.005. Epub 2016 Dec 8.


CERES: A new cerebellum lobule segmentation method.

Romero JE, Coupé P, Giraud R, Ta VT, Fonov V, Park MTM, Chakravarty MM, Voineskos AN, Manjón JV.

Neuroimage. 2017 Feb 15;147:916-924. doi: 10.1016/j.neuroimage.2016.11.003. Epub 2016 Nov 8.


SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data.

De Leener B, Lévy S, Dupont SM, Fonov VS, Stikov N, Louis Collins D, Callot V, Cohen-Adad J.

Neuroimage. 2017 Jan 15;145(Pt A):24-43. doi: 10.1016/j.neuroimage.2016.10.009. Epub 2016 Oct 5.


MINC 2.0: A Flexible Format for Multi-Modal Images.

Vincent RD, Neelin P, Khalili-Mahani N, Janke AL, Fonov VS, Robbins SM, Baghdadi L, Lerch J, Sled JG, Adalat R, MacDonald D, Zijdenbos AP, Collins DL, Evans AC.

Front Neuroinform. 2016 Aug 11;10:35. doi: 10.3389/fninf.2016.00035. eCollection 2016.


VoxelStats: A MATLAB Package for Multi-Modal Voxel-Wise Brain Image Analysis.

Mathotaarachchi S, Wang S, Shin M, Pascoal TA, Benedet AL, Kang MS, Beaudry T, Fonov VS, Gauthier S, Labbe A, Rosa-Neto P.

Front Neuroinform. 2016 Jun 15;10:20. doi: 10.3389/fninf.2016.00020. eCollection 2016.


The developmental relationship between DHEA and visual attention is mediated by structural plasticity of cortico-amygdalar networks.

Nguyen TV, Gower P, Albaugh MD, Botteron KN, Hudziak JJ, Fonov VS, Collins L, Ducharme S, McCracken JT.

Psychoneuroendocrinology. 2016 Aug;70:122-33. doi: 10.1016/j.psyneuen.2016.05.003. Epub 2016 May 6.


Development of cortical shape in the human brain from 6 to 24months of age via a novel measure of shape complexity.

Kim SH, Lyu I, Fonov VS, Vachet C, Hazlett HC, Smith RG, Piven J, Dager SR, Mckinstry RC, Pruett JR Jr, Evans AC, Collins DL, Botteron KN, Schultz RT, Gerig G, Styner MA; IBIS Network.

Neuroimage. 2016 Jul 15;135:163-76. doi: 10.1016/j.neuroimage.2016.04.053. Epub 2016 May 3.


Non-Local Means Inpainting of MS Lesions in Longitudinal Image Processing.

Guizard N, Nakamura K, Coupé P, Fonov VS, Arnold DL, Collins DL.

Front Neurosci. 2015 Dec 15;9:456. doi: 10.3389/fnins.2015.00456. eCollection 2015.


Impaired growth of the cerebellum in pediatric-onset acquired CNS demyelinating disease.

Weier K, Fonov V, Aubert-Broche B, Arnold DL, Banwell B, Collins DL.

Mult Scler. 2016 Sep;22(10):1266-78. doi: 10.1177/1352458515615224. Epub 2015 Nov 9.


Detection of Alzheimer's disease signature in MR images seven years before conversion to dementia: Toward an early individual prognosis.

Coupé P, Fonov VS, Bernard C, Zandifar A, Eskildsen SF, Helmer C, Manjón JV, Amieva H, Dartigues JF, Allard M, Catheline G, Collins DL; Alzheimer's Disease Neuroimaging Initiative.

Hum Brain Mapp. 2015 Dec;36(12):4758-70. doi: 10.1002/hbm.22926. Epub 2015 Oct 10.


Network structure of brain atrophy in de novo Parkinson's disease.

Zeighami Y, Ulla M, Iturria-Medina Y, Dadar M, Zhang Y, Larcher KM, Fonov V, Evans AC, Collins DL, Dagher A.

Elife. 2015 Sep 7;4. doi: 10.7554/eLife.08440.


Spatio-Temporal Regularization for Longitudinal Registration to Subject-Specific 3d Template.

Guizard N, Fonov VS, García-Lorenzo D, Nakamura K, Aubert-Broche B, Collins DL.

PLoS One. 2015 Aug 24;10(8):e0133352. doi: 10.1371/journal.pone.0133352. eCollection 2015.


Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge.

Cash DM, Frost C, Iheme LO, Ünay D, Kandemir M, Fripp J, Salvado O, Bourgeat P, Reuter M, Fischl B, Lorenzi M, Frisoni GB, Pennec X, Pierson RK, Gunter JL, Senjem ML, Jack CR Jr, Guizard N, Fonov VS, Collins DL, Modat M, Cardoso MJ, Leung KK, Wang H, Das SR, Yushkevich PA, Malone IB, Fox NC, Schott JM, Ourselin S.

Neuroimage. 2015 Dec;123:149-64. doi: 10.1016/j.neuroimage.2015.07.087. Epub 2015 Aug 11.


Contribution of the cerebellum to cognitive performance in children and adolescents with multiple sclerosis.

Weier K, Till C, Fonov V, Yeh EA, Arnold DL, Banwell B, Collins DL.

Mult Scler. 2016 Apr;22(5):599-607. doi: 10.1177/1352458515595132. Epub 2015 Jul 22.


Rotation-invariant multi-contrast non-local means for MS lesion segmentation.

Guizard N, Coupé P, Fonov VS, Manjón JV, Arnold DL, Collins DL.

Neuroimage Clin. 2015 May 13;8:376-89. doi: 10.1016/j.nicl.2015.05.001. eCollection 2015.


A stereotaxic, population-averaged T1w ovine brain atlas including cerebral morphology and tissue volumes.

Nitzsche B, Frey S, Collins LD, Seeger J, Lobsien D, Dreyer A, Kirsten H, Stoffel MH, Fonov VS, Boltze J.

Front Neuroanat. 2015 Jun 4;9:69. doi: 10.3389/fnana.2015.00069. eCollection 2015.


Shape index distribution based local surface complexity applied to the human cortex.

Kim SH, Fonov V, Collins DL, Gerig G; IBIS Network, Styner MA.

Proc SPIE Int Soc Opt Eng. 2015;9413. pii: 941344.


A new template to study callosal growth shows specific growth in anterior and posterior regions of the corpus callosum in early childhood.

Ansado J, Collins L, Fonov V, Garon M, Alexandrov L, Karama S, Evans A, Beauchamp MH; Brain Development Cooperative Group.

Eur J Neurosci. 2015 Jul;42(1):1675-84. doi: 10.1111/ejn.12869. Epub 2015 Apr 10.


Accurate age classification of 6 and 12 month-old infants based on resting-state functional connectivity magnetic resonance imaging data.

Pruett JR Jr, Kandala S, Hoertel S, Snyder AZ, Elison JT, Nishino T, Feczko E, Dosenbach NU, Nardos B, Power JD, Adeyemo B, Botteron KN, McKinstry RC, Evans AC, Hazlett HC, Dager SR, Paterson S, Schultz RT, Collins DL, Fonov VS, Styner M, Gerig G, Das S, Kostopoulos P, Constantino JN, Estes AM; IBIS Network, Petersen SE, Schlaggar BL, Piven J.

Dev Cogn Neurosci. 2015 Apr;12:123-33. doi: 10.1016/j.dcn.2015.01.003. Epub 2015 Feb 3.


Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: the CADDementia challenge.

Bron EE, Smits M, van der Flier WM, Vrenken H, Barkhof F, Scheltens P, Papma JM, Steketee RM, Méndez Orellana C, Meijboom R, Pinto M, Meireles JR, Garrett C, Bastos-Leite AJ, Abdulkadir A, Ronneberger O, Amoroso N, Bellotti R, Cárdenas-Peña D, Álvarez-Meza AM, Dolph CV, Iftekharuddin KM, Eskildsen SF, Coupé P, Fonov VS, Franke K, Gaser C, Ledig C, Guerrero R, Tong T, Gray KR, Moradi E, Tohka J, Routier A, Durrleman S, Sarica A, Di Fatta G, Sensi F, Chincarini A, Smith GM, Stoyanov ZV, Sørensen L, Nielsen M, Tangaro S, Inglese P, Wachinger C, Reuter M, van Swieten JC, Niessen WJ, Klein S; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2015 May 1;111:562-79. doi: 10.1016/j.neuroimage.2015.01.048. Epub 2015 Jan 31.


Onset of multiple sclerosis before adulthood leads to failure of age-expected brain growth.

Aubert-Broche B, Fonov V, Narayanan S, Arnold DL, Araujo D, Fetco D, Till C, Sled JG, Banwell B, Collins DL; Canadian Pediatric Demyelinating Disease Network.

Neurology. 2014 Dec 2;83(23):2140-6. doi: 10.1212/WNL.0000000000001045. Epub 2014 Nov 5.


Structural imaging biomarkers of Alzheimer's disease: predicting disease progression.

Eskildsen SF, Coupé P, Fonov VS, Pruessner JC, Collins DL; Alzheimer's Disease Neuroimaging Initiative.

Neurobiol Aging. 2015 Jan;36 Suppl 1:S23-31. doi: 10.1016/j.neurobiolaging.2014.04.034. Epub 2014 Aug 28.


Morphometric changes of the corpus callosum in congenital blindness.

Tomaiuolo F, Campana S, Collins DL, Fonov VS, Ricciardi E, Sartori G, Pietrini P, Kupers R, Ptito M.

PLoS One. 2014 Sep 25;9(9):e107871. doi: 10.1371/journal.pone.0107871. eCollection 2014.


Patch-based label fusion segmentation of brainstem structures with dual-contrast MRI for Parkinson's disease.

Xiao Y, Fonov VS, Beriault S, Gerard I, Sadikot AF, Pike GB, Collins DL.

Int J Comput Assist Radiol Surg. 2015 Jul;10(7):1029-41. doi: 10.1007/s11548-014-1119-4. Epub 2014 Sep 24.


Framework for integrated MRI average of the spinal cord white and gray matter: the MNI-Poly-AMU template.

Fonov VS, Le Troter A, Taso M, De Leener B, Lévêque G, Benhamou M, Sdika M, Benali H, Pradat PF, Collins DL, Callot V, Cohen-Adad J.

Neuroimage. 2014 Nov 15;102 Pt 2:817-27. doi: 10.1016/j.neuroimage.2014.08.057. Epub 2014 Sep 7.


Neuroanatomical correlates of behavioral rating versus performance measures of working memory in typically developing children and adolescents.

Faridi N, Karama S, Burgaleta M, White MT, Evans AC, Fonov V, Collins DL, Waber DP.

Neuropsychology. 2015 Jan;29(1):82-91. doi: 10.1037/neu0000079. Epub 2014 Jul 7. Erratum in: Neuropsychology. 2015 Jan;29(1):91. White, Matthew [corrected to White, Matthew T].


Multi-contrast unbiased MRI atlas of a Parkinson's disease population.

Xiao Y, Fonov V, Bériault S, Al Subaie F, Chakravarty MM, Sadikot AF, Pike GB, Collins DL.

Int J Comput Assist Radiol Surg. 2015 Mar;10(3):329-41. doi: 10.1007/s11548-014-1068-y. Epub 2014 May 20.


Nonrigid registration of ultrasound and MRI using contextual conditioned mutual information.

Rivaz H, Karimaghaloo Z, Fonov VS, Collins DL.

IEEE Trans Med Imaging. 2014 Mar;33(3):708-25. doi: 10.1109/TMI.2013.2294630.


Resting state executive control network adaptations in amnestic mild cognitive impairment.

Wu L, Soder RB, Schoemaker D, Carbonnell F, Sziklas V, Rowley J, Mohades S, Fonov V, Bellec P, Dagher A, Shmuel A, Jia J, Gauthier S, Rosa-Neto P.

J Alzheimers Dis. 2014;40(4):993-1004. doi: 10.3233/JAD-131574.


Jacobian integration method increases the statistical power to measure gray matter atrophy in multiple sclerosis.

Nakamura K, Guizard N, Fonov VS, Narayanan S, Collins DL, Arnold DL.

Neuroimage Clin. 2013 Oct 29;4:10-7. doi: 10.1016/j.nicl.2013.10.015. eCollection 2014.


White matter abnormalities and structural hippocampal disconnections in amnestic mild cognitive impairment and Alzheimer's disease.

Rowley J, Fonov V, Wu O, Eskildsen SF, Schoemaker D, Wu L, Mohades S, Shin M, Sziklas V, Cheewakriengkrai L, Shmuel A, Dagher A, Gauthier S, Rosa-Neto P; Alzheimer's Disease Neuroimaging Initiative.

PLoS One. 2013 Sep 27;8(9):e74776. doi: 10.1371/journal.pone.0074776. eCollection 2013.


Interhemispheric coupling improves the brain's ability to perform low cognitive demand tasks in Alzheimer's disease and high cognitive demand tasks in normal aging.

Ansado J, Collins L, Joubert S, Fonov V, Monchi O, Brambati SM, Tomaiuolo F, Petrides M, Faure S, Joanette Y.

Neuropsychology. 2013 Jul;27(4):464-80. doi: 10.1037/a0032854.


Childhood cognitive ability accounts for associations between cognitive ability and brain cortical thickness in old age.

Karama S, Bastin ME, Murray C, Royle NA, Penke L, Muñoz Maniega S, Gow AJ, Corley J, Valdés Hernández Mdel C, Lewis JD, Rousseau MÉ, Lepage C, Fonov V, Collins DL, Booth T, Rioux P, Sherif T, Adalat R, Starr JM, Evans AC, Wardlaw JM, Deary IJ.

Mol Psychiatry. 2014 May;19(5):555-9. doi: 10.1038/mp.2013.64. Epub 2013 Jun 4.


A new method for structural volume analysis of longitudinal brain MRI data and its application in studying the growth trajectories of anatomical brain structures in childhood.

Aubert-Broche B, Fonov VS, García-Lorenzo D, Mouiha A, Guizard N, Coupé P, Eskildsen SF, Collins DL.

Neuroimage. 2013 Nov 15;82:393-402. doi: 10.1016/j.neuroimage.2013.05.065. Epub 2013 May 26.


Dissociation between brain amyloid deposition and metabolism in early mild cognitive impairment.

Wu L, Rowley J, Mohades S, Leuzy A, Dauar MT, Shin M, Fonov V, Jia J, Gauthier S, Rosa-Neto P; Alzheimer’s Disease Neuroimaging Initiative.

PLoS One. 2012;7(10):e47905. doi: 10.1371/journal.pone.0047905. Epub 2012 Oct 24.

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