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Items: 1 to 50 of 591

1.

Acquisition of Volatile Compounds by Gas Chromatography-Mass Spectrometry (GC-MS).

Vallarino JG, Erban A, Fehrle I, Fernie AR, Kopka J, Osorio S.

Methods Mol Biol. 2018;1778:225-239. doi: 10.1007/978-1-4939-7819-9_16.

PMID:
29761442
2.

Targeted LC-MS Analysis for Plant Secondary Metabolites.

Shimizu T, Watanabe M, Fernie AR, Tohge T.

Methods Mol Biol. 2018;1778:171-181. doi: 10.1007/978-1-4939-7819-9_12.

PMID:
29761438
3.

Carbon Atomic Survey for Identification of Selected Metabolic Fluxes.

Perez de Souza L, Fernie AR, Tohge T.

Methods Mol Biol. 2018;1778:59-67. doi: 10.1007/978-1-4939-7819-9_5.

PMID:
29761431
4.

Gas Chromatography-Mass Spectrometry-Based 13C-Labeling Studies in Plant Metabolomics.

Lima VF, de Souza LP, Williams TCR, Fernie AR, Daloso DM.

Methods Mol Biol. 2018;1778:47-58. doi: 10.1007/978-1-4939-7819-9_4.

PMID:
29761430
5.

Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance.

Alseekh S, Wu S, Brotman Y, Fernie AR.

Methods Mol Biol. 2018;1778:33-46. doi: 10.1007/978-1-4939-7819-9_3.

PMID:
29761429
6.

The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.

Ma X, Zhang Y, Turečková V, Xue GP, Fernie AR, Mueller-Roeber B, Balazadeh S.

Plant Physiol. 2018 May 14. pii: pp.00292.2018. doi: 10.1104/pp.18.00292. [Epub ahead of print]

7.

The outer membrane Omp85-like protein P39 influences metabolic homeostasis in mature Arabidopsis thaliana.

Hsueh YC, Nicolaisen K, Gross LE, Nöthen J, Schauer N, Vojta L, Ertel F, Koch I, Ladig R, Fulgosi H, Fernie AR, Schleiff E.

Plant Biol (Stuttg). 2018 May 14. doi: 10.1111/plb.12839. [Epub ahead of print]

PMID:
29758131
8.

On the natural diversity of phenylacylated-flavonoid and their in planta function under conditions of stress.

Tohge T, Perez de Souza L, Fernie AR.

Phytochem Rev. 2018;17(2):279-290. doi: 10.1007/s11101-017-9531-3. Epub 2017 Sep 8. Review.

9.

Metabolomics 20 years on: What have we learned and what hurdles remain?

Alseekh S, Fernie AR.

Plant J. 2018 May 7. doi: 10.1111/tpj.13950. [Epub ahead of print]

PMID:
29734513
10.

Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence.

Kamranfar I, Xue GP, Tohge T, Sedaghatmehr M, Fernie AR, Balazadeh S, Mueller-Roeber B.

New Phytol. 2018 Jun;218(4):1543-1557. doi: 10.1111/nph.15127. Epub 2018 Apr 16.

PMID:
29659022
11.

The natural variance of the Arabidopsis floral secondary metabolites.

Tohge T, Borghi M, Fernie AR.

Sci Data. 2018 Apr 3;5:180051. doi: 10.1038/sdata.2018.51.

12.

Interaction of Nitric Oxide with the Components of Plant Mitochondrial Electron Transport Chain.

Gupta KJ, Kumari A, Florez-Sarasa I, Fernie AR, Igamberdiev AU.

J Exp Bot. 2018 Mar 24. doi: 10.1093/jxb/ery119. [Epub ahead of print]

PMID:
29590433
13.

Sucrose breakdown within guard cells provides substrates for glycolysis and glutamine biosynthesis during light-induced stomatal opening.

Medeiros DB, Perez Souza L, Antunes WC, Araújo WL, Daloso DM, Fernie AR.

Plant J. 2018 May;94(4):583-594. doi: 10.1111/tpj.13889. Epub 2018 Apr 17.

PMID:
29543357
14.

Inhibition of plastid PPase and NTT leads to major changes in starch and tuber formation in potato.

Andersson M, Turesson H, Arrivault S, Zhang Y, Fält AS, Fernie AR, Hofvander P.

J Exp Bot. 2018 Apr 9;69(8):1913-1924. doi: 10.1093/jxb/ery051.

PMID:
29538769
15.

Metabolic regulation of photosynthesis.

Heyneke E, Fernie AR.

Biochem Soc Trans. 2018 Apr 17;46(2):321-328. doi: 10.1042/BST20170296. Epub 2018 Mar 9. Review.

PMID:
29523770
16.

Autophagy-related approaches for improving nutrient use efficiency and crop yield protection.

Avin-Wittenberg T, Baluška F, Bozhkov PV, Elander PH, Fernie AR, Galili G, Hassan A, Hofius D, Isono E, Le Bars R, Masclaux-Daubresse C, Minina EA, Peled-Zehavi H, Coll NS, Sandalio LM, Satiat-Jeunemaitre B, Sirko A, Testillano PS, Batoko H.

J Exp Bot. 2018 Mar 14;69(6):1335-1353. doi: 10.1093/jxb/ery069.

PMID:
29474677
17.

Next-generation strategies for understanding and influencing source-sink relations in crop plants.

Sonnewald U, Fernie AR.

Curr Opin Plant Biol. 2018 Feb 8;43:63-70. doi: 10.1016/j.pbi.2018.01.004. [Epub ahead of print] Review.

PMID:
29428477
18.

Comprehensive Metabolomics Studies of Plant Developmental Senescence.

Watanabe M, Tohge T, Balazadeh S, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R.

Methods Mol Biol. 2018;1744:339-358. doi: 10.1007/978-1-4939-7672-0_28.

PMID:
29392679
19.

A plastidial pantoate transporter with a potential role in pantothenate synthesis.

Huang L, Pyc M, Alseekh S, McCarty DR, de Crécy-Lagard V, Gregory JF 3rd, Henry CS, Fernie AR, Mullen RT, Hanson AD.

Biochem J. 2018 Feb 28;475(4):813-825. doi: 10.1042/BCJ20170883.

PMID:
29382740
20.

An integrated multi-layered analysis of the metabolic networks of different tissues uncovers key genetic components of primary metabolism in maize.

Wen W, Jin M, Li K, Liu H, Xiao Y, Zhao M, Alseekh S, Li W, de Abreu E Lima F, Brotman Y, Willmitzer L, Fernie AR, Yan J.

Plant J. 2018 Mar;93(6):1116-1128. doi: 10.1111/tpj.13835. Epub 2018 Feb 24.

PMID:
29381266
21.

Uncoupling proteins 1 and 2 (UCP1 and UCP2) from Arabidopsis thaliana are mitochondrial transporters of aspartate, glutamate, and dicarboxylates.

Monné M, Daddabbo L, Gagneul D, Obata T, Hielscher B, Palmieri L, Miniero DV, Fernie AR, Weber APM, Palmieri F.

J Biol Chem. 2018 Mar 16;293(11):4213-4227. doi: 10.1074/jbc.RA117.000771. Epub 2018 Jan 25.

PMID:
29371401
22.

Rewiring of the Fruit Metabolome in Tomato Breeding.

Zhu G, Wang S, Huang Z, Zhang S, Liao Q, Zhang C, Lin T, Qin M, Peng M, Yang C, Cao X, Han X, Wang X, van der Knaap E, Zhang Z, Cui X, Klee H, Fernie AR, Luo J, Huang S.

Cell. 2018 Jan 11;172(1-2):249-261.e12. doi: 10.1016/j.cell.2017.12.019.

PMID:
29328914
23.

More to NAD+ than meets the eye: A regulator of metabolic pools and gene expression in Arabidopsis.

Gakière B, Fernie AR, Pétriacq P.

Free Radic Biol Med. 2018 Jan 5. pii: S0891-5849(18)30003-0. doi: 10.1016/j.freeradbiomed.2018.01.003. [Epub ahead of print]

PMID:
29309893
24.

An In Vivo Perspective of the Role(s) of the Alternative Oxidase Pathway.

Del-Saz NF, Ribas-Carbo M, McDonald AE, Lambers H, Fernie AR, Florez-Sarasa I.

Trends Plant Sci. 2018 Mar;23(3):206-219. doi: 10.1016/j.tplants.2017.11.006. Epub 2017 Dec 18. Review.

PMID:
29269217
25.

To Bring Flowers or Do a Runner: Gibberellins Make the Decision.

Martins AO, Nunes-Nesi A, Araújo WL, Fernie AR.

Mol Plant. 2018 Jan 8;11(1):4-6. doi: 10.1016/j.molp.2017.12.005. Epub 2017 Dec 15. No abstract available.

26.

Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat.

Rodriguez Cubillos AE, Tong H, Alseekh S, de Abreu E Lima F, Yu J, Fernie AR, Nikoloski Z, Laitinen RAE.

Heredity (Edinb). 2018 May;120(5):463-473. doi: 10.1038/s41437-017-0030-5. Epub 2017 Dec 13.

PMID:
29234160
27.

Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.

Peng M, Shahzad R, Gul A, Subthain H, Shen S, Lei L, Zheng Z, Zhou J, Lu D, Wang S, Nishawy E, Liu X, Tohge T, Fernie AR, Luo J.

Nat Commun. 2017 Dec 7;8(1):1975. doi: 10.1038/s41467-017-02168-x.

28.

STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.

Nietzsche M, Guerra T, Alseekh S, Wiermer M, Sonnewald S, Fernie AR, Börnke F.

Plant Physiol. 2018 Feb;176(2):1773-1792. doi: 10.1104/pp.17.01461. Epub 2017 Nov 30.

29.

Differential lipidome remodeling during postharvest of peach varieties with different susceptibility to chilling injury.

Bustamante CA, Brotman Y, Monti LL, Gabilondo J, Budde CO, Lara MV, Fernie AR, Drincovich MF.

Physiol Plant. 2018 May;163(1):2-17. doi: 10.1111/ppl.12665. Epub 2017 Dec 5.

PMID:
29094760
30.

Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard.

Gago J, Fernie AR, Nikoloski Z, Tohge T, Martorell S, Escalona JM, Ribas-Carbó M, Flexas J, Medrano H.

Plant Methods. 2017 Oct 30;13:90. doi: 10.1186/s13007-017-0241-z. eCollection 2017.

31.

Canalization of Tomato Fruit Metabolism.

Alseekh S, Tong H, Scossa F, Brotman Y, Vigroux F, Tohge T, Ofner I, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2017 Nov;29(11):2753-2765. doi: 10.1105/tpc.17.00367. Epub 2017 Nov 1.

32.

The genetic architecture of photosynthesis and plant growth-related traits in tomato.

de Oliveira Silva FM, Lichtenstein G, Alseekh S, Rosado-Souza L, Conte M, Suguiyama VF, Lira BS, Fanourakis D, Usadel B, Bhering LL, DaMatta FM, Sulpice R, Araújo WL, Rossi M, de Setta N, Fernie AR, Carrari F, Nunes-Nesi A.

Plant Cell Environ. 2018 Feb;41(2):327-341. doi: 10.1111/pce.13084. Epub 2017 Nov 29.

PMID:
29044606
33.

Editorial overview: Plant synthetic and systems biology.

Kopka J, Fernie AR.

Curr Opin Biotechnol. 2018 Feb;49:viii-xi. doi: 10.1016/j.copbio.2017.10.001. Epub 2017 Oct 13. No abstract available.

PMID:
29033276
34.

De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing.

Schmidt MH, Vogel A, Denton AK, Istace B, Wormit A, van de Geest H, Bolger ME, Alseekh S, Maß J, Pfaff C, Schurr U, Chetelat R, Maumus F, Aury JM, Koren S, Fernie AR, Zamir D, Bolger AM, Usadel B.

Plant Cell. 2017 Oct;29(10):2336-2348. doi: 10.1105/tpc.17.00521. Epub 2017 Oct 12.

PMID:
29025960
35.

Floral Metabolism of Sugars and Amino Acids: Implications for Pollinators' Preferences and Seed and Fruit Set.

Borghi M, Fernie AR.

Plant Physiol. 2017 Dec;175(4):1510-1524. doi: 10.1104/pp.17.01164. Epub 2017 Oct 6. No abstract available.

36.

Metabolism within the specialized guard cells of plants.

Daloso DM, Medeiros DB, Dos Anjos L, Yoshida T, Araújo WL, Fernie AR.

New Phytol. 2017 Dec;216(4):1018-1033. doi: 10.1111/nph.14823. Epub 2017 Oct 6. Review.

PMID:
28984366
37.

Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth.

Rosa-Téllez S, Anoman AD, Flores-Tornero M, Toujani W, Alseek S, Fernie AR, Nebauer SG, Muñoz-Bertomeu J, Segura J, Ros R.

Plant Physiol. 2018 Feb;176(2):1182-1198. doi: 10.1104/pp.17.01227. Epub 2017 Sep 26.

PMID:
28951489
38.

The Photorespiratory Metabolite 2-Phosphoglycolate Regulates Photosynthesis and Starch Accumulation in Arabidopsis.

Flügel F, Timm S, Arrivault S, Florian A, Stitt M, Fernie AR, Bauwe H.

Plant Cell. 2017 Oct;29(10):2537-2551. doi: 10.1105/tpc.17.00256. Epub 2017 Sep 25.

PMID:
28947491
39.

Commonalities and differences in plants deficient in autophagy and alternative pathways of respiration on response to extended darkness.

Barros JAS, Cavalcanti JHF, Medeiros DB, Nunes-Nesi A, Avin-Wittenberg T, Fernie AR, Araújo WL.

Plant Signal Behav. 2017 Nov 2;12(11):e1377877. doi: 10.1080/15592324.2017.1377877. Epub 2017 Sep 21.

PMID:
28933654
40.

Photosynthetic and metabolic acclimation to repeated drought events play key roles in drought tolerance in coffee.

Menezes-Silva PE, Sanglard LMVP, Ávila RT, Morais LE, Martins SCV, Nobres P, Patreze CM, Ferreira MA, Araújo WL, Fernie AR, DaMatta FM.

J Exp Bot. 2017 Jul 10;68(15):4309-4322. doi: 10.1093/jxb/erx211.

PMID:
28922767
41.

Transcriptomic and metabolomics responses to elevated cell wall invertase activity during tomato fruit set.

Ru L, Osorio S, Wang L, Fernie AR, Patrick JW, Ruan YL.

J Exp Bot. 2017 Jul 10;68(15):4263-4279. doi: 10.1093/jxb/erx219.

PMID:
28922759
42.

Current understanding of the pathways of flavonoid biosynthesis in model and crop plants.

Tohge T, de Souza LP, Fernie AR.

J Exp Bot. 2017 Jul 10;68(15):4013-4028. doi: 10.1093/jxb/erx177.

PMID:
28922752
43.

Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana.

Alhajturki D, Muralidharan S, Nurmi M, Rowan BA, Lunn JE, Boldt H, Salem MA, Alseekh S, Jorzig C, Feil R, Giavalisco P, Fernie AR, Weigel D, Laitinen RAE.

New Phytol. 2018 Jan;217(1):392-406. doi: 10.1111/nph.14781. Epub 2017 Sep 14.

PMID:
28906562
44.

Impaired Malate and Fumarate Accumulation Due to the Mutation of the Tonoplast Dicarboxylate Transporter Has Little Effects on Stomatal Behavior.

Medeiros DB, Barros KA, Barros JAS, Omena-Garcia RP, Arrivault S, Sanglard LMVP, Detmann KC, Silva WB, Daloso DM, DaMatta FM, Nunes-Nesi A, Fernie AR, Araújo WL.

Plant Physiol. 2017 Nov;175(3):1068-1081. doi: 10.1104/pp.17.00971. Epub 2017 Sep 12.

PMID:
28899959
45.

The Genetics of Plant Metabolism.

Fernie AR, Tohge T.

Annu Rev Genet. 2017 Nov 27;51:287-310. doi: 10.1146/annurev-genet-120116-024640. Epub 2017 Sep 6.

PMID:
28876980
46.

Measurements of Electron Partitioning Between Cytochrome and Alternative Oxidase Pathways in Plant Tissues.

Del-Saz NF, Ribas-Carbo M, Martorell G, Fernie AR, Florez-Sarasa I.

Methods Mol Biol. 2017;1670:203-217. doi: 10.1007/978-1-4939-7292-0_17.

PMID:
28871545
47.

Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants.

Omena-Garcia RP, Araújo WL, Gibon Y, Fernie AR, Nunes-Nesi A.

Methods Mol Biol. 2017;1670:167-182. doi: 10.1007/978-1-4939-7292-0_14.

PMID:
28871542
48.

Coupling Radiotracer Experiments with Chemical Fractionation for the Estimation of Respiratory Fluxes.

Obata T, Rosado-Souza L, Fernie AR.

Methods Mol Biol. 2017;1670:17-30. doi: 10.1007/978-1-4939-7292-0_2.

PMID:
28871530
49.

T-protein is present in large excess over the other proteins of the glycine cleavage system in leaves of Arabidopsis.

Timm S, Giese J, Engel N, Wittmiß M, Florian A, Fernie AR, Bauwe H.

Planta. 2018 Jan;247(1):41-51. doi: 10.1007/s00425-017-2767-8. Epub 2017 Sep 2.

PMID:
28866761
50.

Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions.

Wu S, Tohge T, Cuadros-Inostroza Á, Tong H, Tenenboim H, Kooke R, Méret M, Keurentjes JB, Nikoloski Z, Fernie AR, Willmitzer L, Brotman Y.

Mol Plant. 2018 Jan 8;11(1):118-134. doi: 10.1016/j.molp.2017.08.012. Epub 2017 Sep 1.

PMID:
28866081

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