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Items: 5

1.

Genetic circuit characterization and debugging using RNA-seq.

Gorochowski TE, Espah Borujeni A, Park Y, Nielsen AA, Zhang J, Der BS, Gordon DB, Voigt CA.

Mol Syst Biol. 2017 Nov 9;13(11):952. doi: 10.15252/msb.20167461.

2.

Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences.

Espah Borujeni A, Cetnar D, Farasat I, Smith A, Lundgren N, Salis HM.

Nucleic Acids Res. 2017 May 19;45(9):5437-5448. doi: 10.1093/nar/gkx061.

3.

Translation Initiation is Controlled by RNA Folding Kinetics via a Ribosome Drafting Mechanism.

Espah Borujeni A, Salis HM.

J Am Chem Soc. 2016 Jun 8;138(22):7016-23. doi: 10.1021/jacs.6b01453. Epub 2016 May 26.

PMID:
27199273
4.

Automated physics-based design of synthetic riboswitches from diverse RNA aptamers.

Espah Borujeni A, Mishler DM, Wang J, Huso W, Salis HM.

Nucleic Acids Res. 2016 Jan 8;44(1):1-13. doi: 10.1093/nar/gkv1289. Epub 2015 Nov 30.

5.

Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites.

Espah Borujeni A, Channarasappa AS, Salis HM.

Nucleic Acids Res. 2014 Feb;42(4):2646-59. doi: 10.1093/nar/gkt1139. Epub 2013 Nov 14.

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