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Items: 1 to 50 of 605

1.

Characterization of shifts of koala (Phascolarctos cinereus) intestinal microbial communities associated with antibiotic treatment.

Dahlhausen KE, Doroud L, Firl AJ, Polkinghorne A, Eisen JA.

PeerJ. 2018 Mar 12;6:e4452. doi: 10.7717/peerj.4452. eCollection 2018.

2.

Correction: A microbial survey of the International Space Station (ISS).

Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA.

PeerJ. 2018 Feb 27;5. pii: e4029/correction-1. doi: 10.7717/peerj.4029/correction-1. eCollection 2018.

3.

A microbial survey of the International Space Station (ISS).

Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA.

PeerJ. 2017 Dec 5;5:e4029. doi: 10.7717/peerj.4029. eCollection 2017. Erratum in: PeerJ. 2018 Feb 27;5:.

4.

Microbiota promote secretory cell determination in the intestinal epithelium by modulating host Notch signaling.

Troll JV, Hamilton MK, Abel ML, Ganz J, Bates JM, Stephens WZ, Melancon E, van der Vaart M, Meijer AH, Distel M, Eisen JS, Guillemin K.

Development. 2018 Feb 23;145(4). pii: dev155317. doi: 10.1242/dev.155317.

PMID:
29475973
5.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

6.

Gamma Ventral Capsulotomy in Intractable Obsessive-Compulsive Disorder.

Rasmussen SA, Noren G, Greenberg BD, Marsland R, McLaughlin NC, Malloy PJ, Salloway SP, Strong DR, Eisen JL, Jenike MA, Rauch SL, Baer L, Lindquist C.

Biol Psychiatry. 2017 Dec 15. pii: S0006-3223(17)32284-9. doi: 10.1016/j.biopsych.2017.11.034. [Epub ahead of print]

PMID:
29361268
7.

Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla.

Becraft ED, Woyke T, Jarett J, Ivanova N, Godoy-Vitorino F, Poulton N, Brown JM, Brown J, Lau MCY, Onstott T, Eisen JA, Moser D, Stepanauskas R.

Front Microbiol. 2017 Nov 28;8:2264. doi: 10.3389/fmicb.2017.02264. eCollection 2017.

8.

Guidelines for morpholino use in zebrafish.

Stainier DYR, Raz E, Lawson ND, Ekker SC, Burdine RD, Eisen JS, Ingham PW, Schulte-Merker S, Yelon D, Weinstein BM, Mullins MC, Wilson SW, Ramakrishnan L, Amacher SL, Neuhauss SCF, Meng A, Mochizuki N, Panula P, Moens CB.

PLoS Genet. 2017 Oct 19;13(10):e1007000. doi: 10.1371/journal.pgen.1007000. eCollection 2017 Oct. No abstract available.

9.

The impact of lifetime PTSD on the seven-year course and clinical characteristics of OCD.

Ojserkis R, Boisseau CL, Reddy MK, Mancebo MC, Eisen JL, Rasmussen SA.

Psychiatry Res. 2017 Dec;258:78-82. doi: 10.1016/j.psychres.2017.09.042. Epub 2017 Sep 19.

PMID:
28988123
10.

The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria.

Wilbanks EG, Salman-Carvalho V, Jaekel U, Humphrey PT, Eisen JA, Buckley DH, Zinder SH.

Front Microbiol. 2017 Sep 4;8:1623. doi: 10.3389/fmicb.2017.01623. eCollection 2017.

11.

Microbiome succession during ammonification in eelgrass bed sediments.

Ettinger CL, Williams SL, Abbott JM, Stachowicz JJ, Eisen JA.

PeerJ. 2017 Aug 16;5:e3674. doi: 10.7717/peerj.3674. eCollection 2017.

12.

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893.

PMID:
28787424
13.

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC.

Nat Biotechnol. 2017 Jul;35(7):676-683. doi: 10.1038/nbt.3886. Epub 2017 Jun 12.

14.

Complete Genome Sequence of Dolosigranulum pigrum from a Patient with Interstitial Lung Disease Using Single-Molecule Real-Time Sequencing Technology.

Mukhopadhyay R, Joaquin J, Hogue R, Fitzgerald S, Jospin G, Mars K, Eisen JA, Chaturvedi V.

Genome Announc. 2017 May 4;5(18). pii: e00317-17. doi: 10.1128/genomeA.00317-17.

15.

Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge.

Ettinger CL, Voerman SE, Lang JM, Stachowicz JJ, Eisen JA.

PeerJ. 2017 Apr 27;5:e3246. doi: 10.7717/peerj.3246. eCollection 2017.

16.

A cross-cultural clinical comparison between subjects with obsessive-compulsive disorder from the United States and Brazil.

Medeiros GC, Torres AR, Boisseau CL, Leppink EW, Eisen JL, Fontenelle LF, do Rosário MC, Mancebo MC, Rasmussen SA, Ferrão YA, Grant JE.

Psychiatry Res. 2017 Aug;254:104-111. doi: 10.1016/j.psychres.2017.04.024. Epub 2017 Apr 12.

PMID:
28457988
17.

Gut Check: The evolution of an educational board game.

Coil DA, Ettinger CL, Eisen JA.

PLoS Biol. 2017 Apr 28;15(4):e2001984. doi: 10.1371/journal.pbio.2001984. eCollection 2017 Apr.

18.

Complete Genome Sequence of a Paenalcaligenes hominis Strain Isolated from a Paraplegic Patient with Neurogenic Bladder Using Single-Molecule Real-Time Sequencing Technology.

Mukhopadhyay R, Joaquin J, Hogue R, Kilaru A, Jospin G, Mars K, Eisen JA, Chaturvedi V.

Genome Announc. 2017 Apr 27;5(17). pii: e00252-17. doi: 10.1128/genomeA.00252-17.

19.

Correction: A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications.

Fowler DK, Stewart S, Seredick S, Eisen JS, Stankunas K, Washbourne P.

PLoS One. 2017 Apr 20;12(4):e0176543. doi: 10.1371/journal.pone.0176543. eCollection 2017.

20.

Global-Scale Structure of the Eelgrass Microbiome.

Fahimipour AK, Kardish MR, Lang JM, Green JL, Eisen JA, Stachowicz JJ.

Appl Environ Microbiol. 2017 May 31;83(12). pii: e03391-16. doi: 10.1128/AEM.03391-16. Print 2017 Jun 15.

22.

Research priorities for harnessing plant microbiomes in sustainable agriculture.

Busby PE, Soman C, Wagner MR, Friesen ML, Kremer J, Bennett A, Morsy M, Eisen JA, Leach JE, Dangl JL.

PLoS Biol. 2017 Mar 28;15(3):e2001793. doi: 10.1371/journal.pbio.2001793. eCollection 2017 Mar.

23.

Draft Genome Sequence of Propionibacterium avidum Strain UCD-PD2 Isolated from a Feline Anal Sac.

Dahms PA, Martin AL, Ganz HH, Eisen JA, Coil DA.

Genome Announc. 2017 Mar 23;5(12). pii: e00034-17. doi: 10.1128/genomeA.00034-17.

24.

Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infected by Influenza A Viruses.

Ganz HH, Doroud L, Firl AJ, Hird SM, Eisen JA, Boyce WM.

mSystems. 2017 Feb 28;2(1). pii: e00188-16. doi: 10.1128/mSystems.00188-16. eCollection 2017 Jan-Feb.

25.

Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon.

Tokajian S, Salloum T, Eisen JA, Jospin G, Farra A, Mokhbat JE, Coil DA.

Future Microbiol. 2017 Mar;12:213-226. doi: 10.2217/fmb-2017-0171. Epub 2017 Feb 27.

PMID:
28262042
26.

Draft Genome Sequences of Dermacoccus nishinomiyaensis Strains UCD-KPL2534 and UCD-KPL2528 Isolated from an Indoor Track Facility.

Klein BA, Lemon KP, Gajare P, Jospin G, Eisen JA, Coil DA.

Genome Announc. 2017 Feb 23;5(8). pii: e01652-16. doi: 10.1128/genomeA.01652-16.

27.

The enteric nervous system promotes intestinal health by constraining microbiota composition.

Rolig AS, Mittge EK, Ganz J, Troll JV, Melancon E, Wiles TJ, Alligood K, Stephens WZ, Eisen JS, Guillemin K.

PLoS Biol. 2017 Feb 16;15(2):e2000689. doi: 10.1371/journal.pbio.2000689. eCollection 2017 Feb.

28.

Draft Genome Sequence of Arthrobacter sp. Strain UCD-GKA (Phylum Actinobacteria).

Kincheloe GN, Eisen JA, Coil DA.

Genome Announc. 2017 Feb 9;5(6). pii: e01599-16. doi: 10.1128/genomeA.01599-16.

29.

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.

Jiao JY, Carro L, Liu L, Gao XY, Zhang XT, Hozzein WN, Lapidus A, Huntemann M, Reddy TBK, Varghese N, Hadjithomas M, Ivanova NN, Göker M, Pillay M, Eisen JA, Woyke T, Klenk HP, Kyrpides NC, Li WJ.

Stand Genomic Sci. 2017 Feb 3;12:21. doi: 10.1186/s40793-017-0226-6. eCollection 2017.

31.

Symptom subtype and quality of life in obsessive-compulsive disorder.

Schwartzman CM, Boisseau CL, Sibrava NJ, Mancebo MC, Eisen JL, Rasmussen SA.

Psychiatry Res. 2017 Mar;249:307-310. doi: 10.1016/j.psychres.2017.01.025. Epub 2017 Jan 20.

32.

Best practices for germ-free derivation and gnotobiotic zebrafish husbandry.

Melancon E, Gomez De La Torre Canny S, Sichel S, Kelly M, Wiles TJ, Rawls JF, Eisen JS, Guillemin K.

Methods Cell Biol. 2017;138:61-100. doi: 10.1016/bs.mcb.2016.11.005. Review.

33.

Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations of Shigella sonnei with either Increased Virulence or Fluoroquinolone Resistance.

Kozyreva VK, Jospin G, Greninger AL, Watt JP, Eisen JA, Chaturvedi V.

mSphere. 2016 Dec 21;1(6). pii: e00344-16. doi: 10.1128/mSphere.00344-16. eCollection 2016 Nov-Dec.

34.

Draft Genome Sequence of Enterococcus faecalis Strain UCD-PD3.

De Vries DR, Martin AL, Ganz HH, Eisen JA, Coil DA.

Genome Announc. 2016 Dec 15;4(6). pii: e01386-16. doi: 10.1128/genomeA.01386-16.

35.

Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections.

Ibrahim J, Eisen JA, Jospin G, Coil DA, Khazen G, Tokajian S.

PLoS One. 2016 Dec 15;11(12):e0168177. doi: 10.1371/journal.pone.0168177. eCollection 2016.

36.

Checking the Brain's Immune Privilege: Evolving Theories of Brain-Immune Interactions.

Fenster RJ, Eisen JL.

Biol Psychiatry. 2017 Jan 15;81(2):e7-e9. doi: 10.1016/j.biopsych.2016.10.027. No abstract available.

37.

Draft Genome Sequence of Curtobacterium sp. Strain UCD-KPL2560 (Phylum Actinobacteria).

Klein BA, Lemon KP, Faller LL, Jospin G, Eisen JA, Coil DA.

Genome Announc. 2016 Oct 6;4(5). pii: e01040-16. doi: 10.1128/genomeA.01040-16.

38.
39.

Draft Genome Sequence of Gordonia sp. Strain UCD-TK1 (Phylum Actinobacteria).

Koenigsaecker TM, Eisen JA, Coil DA.

Genome Announc. 2016 Oct 13;4(5). pii: e01121-16. doi: 10.1128/genomeA.01121-16.

40.

Draft Genome Sequence of Tenacibaculum soleae UCD-KL19.

Lujan KM, Eisen JA, Coil DA.

Genome Announc. 2016 Oct 13;4(5). pii: e01120-16. doi: 10.1128/genomeA.01120-16.

41.

Root-hair endophyte stacking in finger millet creates a physicochemical barrier to trap the fungal pathogen Fusarium graminearum.

Mousa WK, Shearer C, Limay-Rios V, Ettinger CL, Eisen JA, Raizada MN.

Nat Microbiol. 2016 Sep 26;1:16167. doi: 10.1038/nmicrobiol.2016.167.

PMID:
27669453
42.

Molecular fingerprinting delineates progenitor populations in the developing zebrafish enteric nervous system.

Taylor CR, Montagne WA, Eisen JS, Ganz J.

Dev Dyn. 2016 Nov;245(11):1081-1096. doi: 10.1002/dvdy.24438. Epub 2016 Sep 21.

43.

Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos.

Nelson RL, Castro MA, Katti M, Eisen JA, Van Laar TA.

Genome Announc. 2016 Aug 18;4(4). pii: e00807-16. doi: 10.1128/genomeA.00807-16.

44.

A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications.

Fowler DK, Stewart S, Seredick S, Eisen JS, Stankunas K, Washbourne P.

PLoS One. 2016 Aug 8;11(8):e0159277. doi: 10.1371/journal.pone.0159277. eCollection 2016. Erratum in: PLoS One. 2017 Apr 20;12 (4):e0176543.

45.

Parental Accommodation Predicts Symptom Severity at Long-term Follow-Up in Children with Obsessive-Compulsive Disorder.

Francazio SK, Flessner CA, Boisseau CL, Sibrava NJ, Mancebo MC, Eisen JL, Rasmussen SA.

J Child Fam Stud. 2016 Aug;25(8):2562-2570. doi: 10.1007/s10826-016-0408-7. Epub 2016 May 13.

46.

Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota.

Wiles TJ, Jemielita M, Baker RP, Schlomann BH, Logan SL, Ganz J, Melancon E, Eisen JS, Guillemin K, Parthasarathy R.

PLoS Biol. 2016 Jul 26;14(7):e1002517. doi: 10.1371/journal.pbio.1002517. eCollection 2016 Jul.

47.

Universal Healthcare for Zebrafish.

Varga ZM, Lawrence C, Ekker SC, Eisen JS.

Zebrafish. 2016 Jul;13 Suppl 1:S1-4. doi: 10.1089/zeb.2016.1311. No abstract available.

48.

Zebrafish as a model for understanding enteric nervous system interactions in the developing intestinal tract.

Ganz J, Melancon E, Eisen JS.

Methods Cell Biol. 2016;134:139-64. doi: 10.1016/bs.mcb.2016.02.003. Epub 2016 Mar 9.

PMID:
27312493
49.

An empirical investigation of incompleteness in a large clinical sample of obsessive compulsive disorder.

Sibrava NJ, Boisseau CL, Eisen JL, Mancebo MC, Rasmussen SA.

J Anxiety Disord. 2016 Aug;42:45-51. doi: 10.1016/j.janxdis.2016.05.005. Epub 2016 May 13.

50.

Husbandry and Health Program Survey Synopsis.

Lawrence C, Eisen JS, Varga ZM.

Zebrafish. 2016 Jul;13 Suppl 1:S5-7. doi: 10.1089/zeb.2016.1309. Epub 2016 Jun 1. No abstract available.

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