Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 119

1.

Integrated cytogenetics and genomics analysis of transposable elements in the Nile tilapia, Oreochromis niloticus.

Valente G, Kocher T, Eickbush T, Simões RP, Martins C.

Mol Genet Genomics. 2016 Jun;291(3):1219-25. doi: 10.1007/s00438-016-1176-1. Epub 2016 Feb 9.

PMID:
26860923
2.

Integration, Regulation, and Long-Term Stability of R2 Retrotransposons.

Eickbush TH, Eickbush DG.

Microbiol Spectr. 2015 Apr;3(2):MDNA3-0011-2014. doi: 10.1128/microbiolspec.MDNA3-0011-2014. Review.

3.

Identification of RNA binding motifs in the R2 retrotransposon-encoded reverse transcriptase.

Jamburuthugoda VK, Eickbush TH.

Nucleic Acids Res. 2014 Jul;42(13):8405-15. doi: 10.1093/nar/gku514. Epub 2014 Jun 23.

4.

Preferential occupancy of R2 retroelements on the B chromosomes of the grasshopper Eyprepocnemis plorans.

Montiel EE, Cabrero J, Ruiz-Estévez M, Burke WD, Eickbush TH, Camacho JP, López-León MD.

PLoS One. 2014 Mar 14;9(3):e91820. doi: 10.1371/journal.pone.0091820. eCollection 2014.

5.

Evolution of the R2 retrotransposon ribozyme and its self-cleavage site.

Eickbush DG, Burke WD, Eickbush TH.

PLoS One. 2013 Sep 16;8(9):e66441. doi: 10.1371/journal.pone.0066441. eCollection 2013.

6.

In and out of the rRNA genes: characterization of Pokey elements in the sequenced Daphnia genome.

Elliott TA, Stage DE, Crease TJ, Eickbush TH.

Mob DNA. 2013 Sep 23;4(1):20. doi: 10.1186/1759-8753-4-20.

7.

A population genetic model for the maintenance of R2 retrotransposons in rRNA gene loci.

Zhou J, Eickbush MT, Eickbush TH.

PLoS Genet. 2013;9(1):e1003179. doi: 10.1371/journal.pgen.1003179. Epub 2013 Jan 10.

8.

Y chromosome mediates ribosomal DNA silencing and modulates the chromatin state in Drosophila.

Zhou J, Sackton TB, Martinsen L, Lemos B, Eickbush TH, Hartl DL.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9941-6. doi: 10.1073/pnas.1207367109. Epub 2012 Jun 4.

9.

R2 and R2/R1 hybrid non-autonomous retrotransposons derived by internal deletions of full-length elements.

Eickbush DG, Eickbush TH.

Mob DNA. 2012 May 23;3(1):10. doi: 10.1186/1759-8753-3-10.

10.

Heterochromatin formation promotes longevity and represses ribosomal RNA synthesis.

Larson K, Yan SJ, Tsurumi A, Liu J, Zhou J, Gaur K, Guo D, Eickbush TH, Li WX.

PLoS Genet. 2012 Jan;8(1):e1002473. doi: 10.1371/journal.pgen.1002473. Epub 2012 Jan 26.

11.

Retrotransposition of R2 elements in somatic nuclei during the early development of Drosophila.

Eickbush MT, Eickbush TH.

Mob DNA. 2011 Sep 29;2(1):11. doi: 10.1186/1759-8753-2-11.

12.

The R2 retrotransposon RNA families.

Moss WN, Eickbush DG, Lopez MJ, Eickbush TH, Turner DH.

RNA Biol. 2011 Sep-Oct;8(5):714-8. doi: 10.4161/rna.8.5.16033. Epub 2011 Jul 7.

13.

The reverse transcriptase encoded by the non-LTR retrotransposon R2 is as error-prone as that encoded by HIV-1.

Jamburuthugoda VK, Eickbush TH.

J Mol Biol. 2011 Apr 15;407(5):661-72. doi: 10.1016/j.jmb.2011.02.015. Epub 2011 Feb 12.

14.

R2 retrotransposons encode a self-cleaving ribozyme for processing from an rRNA cotranscript.

Eickbush DG, Eickbush TH.

Mol Cell Biol. 2010 Jul;30(13):3142-50. doi: 10.1128/MCB.00300-10. Epub 2010 Apr 26.

15.

Welcome to mobile DNA.

Craig NL, Eickbush TH, Voytas DF.

Mob DNA. 2010 Jan 25;1(1):1. doi: 10.1186/1759-8753-1-1. No abstract available.

16.

Maintenance of multiple lineages of R1 and R2 retrotransposable elements in the ribosomal RNA gene loci of Nasonia.

Stage DE, Eickbush TH.

Insect Mol Biol. 2010 Feb;19 Suppl 1:37-48. doi: 10.1111/j.1365-2583.2009.00949.x.

PMID:
20167016
17.

Origin of nascent lineages and the mechanisms used to prime second-strand DNA synthesis in the R1 and R2 retrotransposons of Drosophila.

Stage DE, Eickbush TH.

Genome Biol. 2009;10(5):R49. doi: 10.1186/gb-2009-10-5-r49. Epub 2009 May 5.

18.

Secondary structures for 5' regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints.

Kierzek E, Christensen SM, Eickbush TH, Kierzek R, Turner DH, Moss WN.

J Mol Biol. 2009 Jul 17;390(3):428-42. doi: 10.1016/j.jmb.2009.04.048. Epub 2009 May 3.

19.

The pattern of R2 retrotransposon activity in natural populations of Drosophila simulans reflects the dynamic nature of the rDNA locus.

Zhou J, Eickbush TH.

PLoS Genet. 2009 Feb;5(2):e1000386. doi: 10.1371/journal.pgen.1000386. Epub 2009 Feb 20.

20.

Role of recombination in the long-term retention of transposable elements in rRNA gene loci.

Zhang X, Eickbush MT, Eickbush TH.

Genetics. 2008 Nov;180(3):1617-26. doi: 10.1534/genetics.108.093716. Epub 2008 Sep 14.

21.

Epigenetic regulation of retrotransposons within the nucleolus of Drosophila.

Eickbush DG, Ye J, Zhang X, Burke WD, Eickbush TH.

Mol Cell Biol. 2008 Oct;28(20):6452-61. doi: 10.1128/MCB.01015-08. Epub 2008 Aug 4.

22.

The diversity of retrotransposons and the properties of their reverse transcriptases.

Eickbush TH, Jamburuthugoda VK.

Virus Res. 2008 Jun;134(1-2):221-34. doi: 10.1016/j.virusres.2007.12.010. Epub 2008 Feb 7. Review.

23.

Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function.

Kierzek E, Kierzek R, Moss WN, Christensen SM, Eickbush TH, Turner DH.

Nucleic Acids Res. 2008 Apr;36(6):1770-82. doi: 10.1093/nar/gkm1085. Epub 2008 Feb 5.

24.

Rapid R2 retrotransposition leads to the loss of previously inserted copies via large deletions of the rDNA locus.

Zhang X, Zhou J, Eickbush TH.

Mol Biol Evol. 2008 Jan;25(1):229-37. Epub 2007 Nov 13.

PMID:
18003600
25.

Evolution of genes and genomes on the Drosophila phylogeny.

Drosophila 12 Genomes Consortium, Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Karpen GH, Kataoka E, Keightley PD, Kheradpour P, Kirkness EF, Koerich LB, Kristiansen K, Kudrna D, Kulathinal RJ, Kumar S, Kwok R, Lander E, Langley CH, Lapoint R, Lazzaro BP, Lee SJ, Levesque L, Li R, Lin CF, Lin MF, Lindblad-Toh K, Llopart A, Long M, Low L, Lozovsky E, Lu J, Luo M, Machado CA, Makalowski W, Marzo M, Matsuda M, Matzkin L, McAllister B, McBride CS, McKernan B, McKernan K, Mendez-Lago M, Minx P, Mollenhauer MU, Montooth K, Mount SM, Mu X, Myers E, Negre B, Newfeld S, Nielsen R, Noor MA, O'Grady P, Pachter L, Papaceit M, Parisi MJ, Parisi M, Parts L, Pedersen JS, Pesole G, Phillippy AM, Ponting CP, Pop M, Porcelli D, Powell JR, Prohaska S, Pruitt K, Puig M, Quesneville H, Ram KR, Rand D, Rasmussen MD, Reed LK, Reenan R, Reily A, Remington KA, Rieger TT, Ritchie MG, Robin C, Rogers YH, Rohde C, Rozas J, Rubenfield MJ, Ruiz A, Russo S, Salzberg SL, Sanchez-Gracia A, Saranga DJ, Sato H, Schaeffer SW, Schatz MC, Schlenke T, Schwartz R, Segarra C, Singh RS, Sirot L, Sirota M, Sisneros NB, Smith CD, Smith TF, Spieth J, Stage DE, Stark A, Stephan W, Strausberg RL, Strempel S, Sturgill D, Sutton G, Sutton GG, Tao W, Teichmann S, Tobari YN, Tomimura Y, Tsolas JM, Valente VL, Venter E, Venter JC, Vicario S, Vieira FG, Vilella AJ, Villasante A, Walenz B, Wang J, Wasserman M, Watts T, Wilson D, Wilson RK, Wing RA, Wolfner MF, Wong A, Wong GK, Wu CI, Wu G, Yamamoto D, Yang HP, Yang SP, Yorke JA, Yoshida K, Zdobnov E, Zhang P, Zhang Y, Zimin AV, Baldwin J, Abdouelleil A, Abdulkadir J, Abebe A, Abera B, Abreu J, Acer SC, Aftuck L, Alexander A, An P, Anderson E, Anderson S, Arachi H, Azer M, Bachantsang P, Barry A, Bayul T, Berlin A, Bessette D, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Bourzgui I, Brown A, Cahill P, Channer S, Cheshatsang Y, Chuda L, Citroen M, Collymore A, Cooke P, Costello M, D'Aco K, Daza R, De Haan G, DeGray S, DeMaso C, Dhargay N, Dooley K, Dooley E, Doricent M, Dorje P, Dorjee K, Dupes A, Elong R, Falk J, Farina A, Faro S, Ferguson D, Fisher S, Foley CD, Franke A, Friedrich D, Gadbois L, Gearin G, Gearin CR, Giannoukos G, Goode T, Graham J, Grandbois E, Grewal S, Gyaltsen K, Hafez N, Hagos B, Hall J, Henson C, Hollinger A, Honan T, Huard MD, Hughes L, Hurhula B, Husby ME, Kamat A, Kanga B, Kashin S, Khazanovich D, Kisner P, Lance K, Lara M, Lee W, Lennon N, Letendre F, LeVine R, Lipovsky A, Liu X, Liu J, Liu S, Lokyitsang T, Lokyitsang Y, Lubonja R, Lui A, MacDonald P, Magnisalis V, Maru K, Matthews C, McCusker W, McDonough S, Mehta T, Meldrim J, Meneus L, Mihai O, Mihalev A, Mihova T, Mittelman R, Mlenga V, Montmayeur A, Mulrain L, Navidi A, Naylor J, Negash T, Nguyen T, Nguyen N, Nicol R, Norbu C, Norbu N, Novod N, O'Neill B, Osman S, Markiewicz E, Oyono OL, Patti C, Phunkhang P, Pierre F, Priest M, Raghuraman S, Rege F, Reyes R, Rise C, Rogov P, Ross K, Ryan E, Settipalli S, Shea T, Sherpa N, Shi L, Shih D, Sparrow T, Spaulding J, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Strader C, Tesfaye S, Thomson T, Thoulutsang Y, Thoulutsang D, Topham K, Topping I, Tsamla T, Vassiliev H, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Young G, Yu Q, Zembek L, Zhong D, Zimmer A, Zwirko Z, Jaffe DB, Alvarez P, Brockman W, Butler J, Chin C, Gnerre S, Grabherr M, Kleber M, Mauceli E, MacCallum I.

Nature. 2007 Nov 8;450(7167):203-18.

PMID:
17994087
26.

Sequence variation within the rRNA gene loci of 12 Drosophila species.

Stage DE, Eickbush TH.

Genome Res. 2007 Dec;17(12):1888-97. Epub 2007 Nov 7.

27.

DNA-directed DNA polymerase and strand displacement activity of the reverse transcriptase encoded by the R2 retrotransposon.

Kurzynska-Kokorniak A, Jamburuthugoda VK, Bibillo A, Eickbush TH.

J Mol Biol. 2007 Nov 23;374(2):322-33. Epub 2007 Sep 20.

28.

Finely orchestrated movements: evolution of the ribosomal RNA genes.

Eickbush TH, Eickbush DG.

Genetics. 2007 Feb;175(2):477-85. Review.

29.

RNA from the 5' end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site.

Christensen SM, Ye J, Eickbush TH.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17602-7. Epub 2006 Nov 14.

30.

Chromatin structure and transcription of the R1- and R2-inserted rRNA genes of Drosophila melanogaster.

Ye J, Eickbush TH.

Mol Cell Biol. 2006 Dec;26(23):8781-90. Epub 2006 Sep 25.

31.

Role of the Bombyx mori R2 element N-terminal domain in the target-primed reverse transcription (TPRT) reaction.

Christensen SM, Bibillo A, Eickbush TH.

Nucleic Acids Res. 2005 Nov 10;33(20):6461-8. Print 2005.

32.

Monitoring the mode and tempo of concerted evolution in the Drosophila melanogaster rDNA locus.

Averbeck KT, Eickbush TH.

Genetics. 2005 Dec;171(4):1837-46. Epub 2005 Sep 2.

33.

Competition between R1 and R2 transposable elements in the 28S rRNA genes of insects.

Ye J, Pérez-González CE, Eickbush DG, Eickbush TH.

Cytogenet Genome Res. 2005;110(1-4):299-306.

PMID:
16093682
35.

Characterization of active R2 retrotransposition in the rDNA locus of Drosophila simulans.

Zhang X, Eickbush TH.

Genetics. 2005 May;170(1):195-205. Epub 2005 Mar 21.

36.

Secondary structure models of the 3' untranslated regions of diverse R2 RNAs.

Ruschak AM, Mathews DH, Bibillo A, Spinelli SL, Childs JL, Eickbush TH, Turner DH.

RNA. 2004 Jun;10(6):978-87.

37.

Footprint of the retrotransposon R2Bm protein on its target site before and after cleavage.

Christensen S, Eickbush TH.

J Mol Biol. 2004 Mar 5;336(5):1035-45.

PMID:
15037067
38.

End-to-end template jumping by the reverse transcriptase encoded by the R2 retrotransposon.

Bibillo A, Eickbush TH.

J Biol Chem. 2004 Apr 9;279(15):14945-53. Epub 2004 Jan 28.

39.
40.

R5 retrotransposons insert into a family of infrequently transcribed 28S rRNA genes of planaria.

Burke WD, Singh D, Eickbush TH.

Mol Biol Evol. 2003 Aug;20(8):1260-70. Epub 2003 May 30.

PMID:
12777502
41.
42.
43.

Fruit flies and humans respond differently to retrotransposons.

Eickbush TH, Furano AV.

Curr Opin Genet Dev. 2002 Dec;12(6):669-74. Review.

PMID:
12433580
44.
45.

High processivity of the reverse transcriptase from a non-long terminal repeat retrotransposon.

Bibillo A, Eickbush TH.

J Biol Chem. 2002 Sep 20;277(38):34836-45. Epub 2002 Jul 5.

46.

Repair by retrotransposition.

Eickbush TH.

Nat Genet. 2002 Jun;31(2):126-7. Epub 2002 May 13. No abstract available.

PMID:
12006979
47.

Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia.

Burke WD, Malik HS, Rich SM, Eickbush TH.

Mol Biol Evol. 2002 May;19(5):619-30.

PMID:
11961096
48.
49.

Dynamics of R1 and R2 elements in the rDNA locus of Drosophila simulans.

Pérez-González CE, Eickbush TH.

Genetics. 2001 Aug;158(4):1557-67.

Supplemental Content

Loading ...
Support Center