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Unintended target effect of anti-BCL-2 DNAi.

Ebrahim AS, Kandouz M, Emara N, Sugalski AB, Lipovich L, Al-Katib AM.

Cancer Manag Res. 2017 Sep 22;9:427-432. doi: 10.2147/CMAR.S139105. eCollection 2017.


Atypical Complications of Graves' Disease: A Case Report and Literature Review.

Baagar KA, Siddique MA, Arroub SA, Ebrahim AH, Jayyousi AA.

Case Rep Endocrinol. 2017;2017:6087135. doi: 10.1155/2017/6087135. Epub 2017 Feb 28.


Ts1Cje Down syndrome model mice exhibit environmental stimuli-triggered locomotor hyperactivity and sociability concurrent with increased flux through central dopamine and serotonin metabolism.

Shimohata A, Ishihara K, Hattori S, Miyamoto H, Morishita H, Ornthanalai G, Raveau M, Ebrahim AS, Amano K, Yamada K, Sago H, Akiba S, Mataga N, Murphy NP, Miyakawa T, Yamakawa K.

Exp Neurol. 2017 Jul;293:1-12. doi: 10.1016/j.expneurol.2017.03.009. Epub 2017 Mar 20.


Serum Chemerin in Obese Children and Adolescents Before and After L-Carnitine Therapy: Relation to Nonalcoholic Fatty Liver Disease and Other Features of Metabolic Syndrome.

Hamza RT, Elkabbany ZA, Shedid AM, Hamed AI, Ebrahim AO.

Arch Med Res. 2016 Oct;47(7):541-549. doi: 10.1016/j.arcmed.2016.11.010.


Principles of proteome allocation are revealed using proteomic data and genome-scale models.

Yang L, Yurkovich JT, Lloyd CJ, Ebrahim A, Saunders MA, Palsson BO.

Sci Rep. 2016 Nov 18;6:36734. doi: 10.1038/srep36734.


Spatio-temporal regulation of EGFR signaling by the Eps15 homology domain-containing protein 3 (EHD3).

Amessou M, Ebrahim AS, Dilly A, Joseph M, Tabolina M, Chukkapalli S, Meroueh L, Syed JT, Liddane A, Lang SL, Al-Katib A, Kandouz M.

Oncotarget. 2016 Nov 29;7(48):79203-79216. doi: 10.18632/oncotarget.13008.


Multi-omic data integration enables discovery of hidden biological regularities.

Ebrahim A, Brunk E, Tan J, O'Brien EJ, Kim D, Szubin R, Lerman JA, Lechner A, Sastry A, Bordbar A, Feist AM, Palsson BO.

Nat Commun. 2016 Oct 26;7:13091. doi: 10.1038/ncomms13091.


solveME: fast and reliable solution of nonlinear ME models.

Yang L, Ma D, Ebrahim A, Lloyd CJ, Saunders MA, Palsson BO.

BMC Bioinformatics. 2016 Sep 22;17(1):391.


Exploring the role of molecular biomarkers as a potential weapon against gastric cancer: A review of the literature.

Matboli M, El-Nakeep S, Hossam N, Habieb A, Azazy AE, Ebrahim AE, Nagy Z, Abdel-Rahman O.

World J Gastroenterol. 2016 Jul 14;22(26):5896-908. doi: 10.3748/wjg.v22.i26.5896. Review.


PNT2258, a novel deoxyribonucleic acid inhibitor, induces cell cycle arrest and apoptosis via a distinct mechanism of action: a new class of drug for non-Hodgkin's lymphoma.

Ebrahim AS, Kandouz M, Liddane A, Sabbagh H, Hou Y, Li C, Al-Katib A.

Oncotarget. 2016 Jul 5;7(27):42374-42384. doi: 10.18632/oncotarget.9872.


Hematologic malignancies: newer strategies to counter the BCL-2 protein.

Ebrahim AS, Sabbagh H, Liddane A, Raufi A, Kandouz M, Al-Katib A.

J Cancer Res Clin Oncol. 2016 Sep;142(9):2013-22. doi: 10.1007/s00432-016-2144-1. Epub 2016 Apr 4. Review.


Apoptosis and electroretinogram after intravitreal injection of methotrexate in an experimental rabbit model.

Aly E, Ebrahim A.

Gen Physiol Biophys. 2016 Apr;35(2):231-6. doi: 10.4149/gpb_2015040. Epub 2016 Feb 2.


Sex Differences in Correlates of Intermediate Phenotypes and Prevalent Cardiovascular Disease in the General Population.

Schnabel RB, Wild PS, Prochaska JH, Ojeda FM, Zeller T, Rzayeva N, Ebrahim A, Lackner KJ, Beutel ME, Pfeiffer N, Sinning CR, Oertelt-Prigione S, Regitz-Zagrosek V, Binder H, Münzel T, Blankenberg S; Gutenberg Health Study Investigators.

Front Cardiovasc Med. 2015 Apr 15;2:15. doi: 10.3389/fcvm.2015.00015. eCollection 2015.


BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.

King ZA, Lu J, Dräger A, Miller P, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, Lewis NE.

Nucleic Acids Res. 2016 Jan 4;44(D1):D515-22. doi: 10.1093/nar/gkv1049. Epub 2015 Oct 17.


Do genome-scale models need exact solvers or clearer standards?

Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I.

Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. No abstract available.


Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.

King ZA, Dräger A, Ebrahim A, Sonnenschein N, Lewis NE, Palsson BO.

PLoS Comput Biol. 2015 Aug 27;11(8):e1004321. doi: 10.1371/journal.pcbi.1004321. eCollection 2015 Aug.


Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.

Yang L, Tan J, O'Brien EJ, Monk JM, Kim D, Li HJ, Charusanti P, Ebrahim A, Lloyd CJ, Yurkovich JT, Du B, Dräger A, Thomas A, Sun Y, Saunders MA, Palsson BO.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10810-5. doi: 10.1073/pnas.1501384112. Epub 2015 Aug 10.


Awareness and predictors of female genital mutilation/cutting among young health advocates.

Abolfotouh SM, Ebrahim AZ, Abolfotouh MA.

Int J Womens Health. 2015 Feb 20;7:259-69. doi: 10.2147/IJWH.S78664. eCollection 2015.


Model-driven discovery of underground metabolic functions in Escherichia coli.

Guzmán GI, Utrilla J, Nurk S, Brunk E, Monk JM, Ebrahim A, Palsson BO, Feist AM.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):929-34. doi: 10.1073/pnas.1414218112. Epub 2015 Jan 6.


Galectins in cancer: carcinogenesis, diagnosis and therapy.

Ebrahim AH, Alalawi Z, Mirandola L, Rakhshanda R, Dahlbeck S, Nguyen D, Jenkins M, Grizzi F, Cobos E, Figueroa JA, Chiriva-Internati M.

Ann Transl Med. 2014 Sep;2(9):88. doi: 10.3978/j.issn.2305-5839.2014.09.12. Review.


Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium.

LaCroix RA, Sandberg TE, O'Brien EJ, Utrilla J, Ebrahim A, Guzman GI, Szubin R, Palsson BO, Feist AM.

Appl Environ Microbiol. 2015 Jan;81(1):17-30. doi: 10.1128/AEM.02246-14. Epub 2014 Oct 10.


The effect of light-emitting diode and laser on mandibular growth in rats.

El-Bialy T, Alhadlaq A, Felemban N, Yeung J, Ebrahim A, Hassan AH.

Angle Orthod. 2015 Mar;85(2):233-8. doi: 10.2319/030914-170.1. Epub 2014 Jul 14. Erratum in: Angle Orthod. 2016 Jan;86(1):177.


Evolution of Escherichia coli to 42 °C and subsequent genetic engineering reveals adaptive mechanisms and novel mutations.

Sandberg TE, Pedersen M, LaCroix RA, Ebrahim A, Bonde M, Herrgard MJ, Palsson BO, Sommer M, Feist AM.

Mol Biol Evol. 2014 Oct;31(10):2647-62. doi: 10.1093/molbev/msu209. Epub 2014 Jul 10.


Minimal metabolic pathway structure is consistent with associated biomolecular interactions.

Bordbar A, Nagarajan H, Lewis NE, Latif H, Ebrahim A, Federowicz S, Schellenberger J, Palsson BO.

Mol Syst Biol. 2014 Jul 1;10:737. doi: 10.15252/msb.20145243.


Bariatric endocrinology: principles of medical practice.

Gonzalez-Campoy JM, Richardson B, Richardson C, Gonzalez-Cameron D, Ebrahim A, Strobel P, Martinez T, Blaha B, Ransom M, Quinonez-Weislow J, Pierson A, Gonzalez Ahumada M.

Int J Endocrinol. 2014;2014:917813. doi: 10.1155/2014/917813. Epub 2014 May 12. Review.


Development and antitumor activity of a BCL-2 targeted single-stranded DNA oligonucleotide.

Rodrigueza WV, Woolliscroft MJ, Ebrahim AS, Forgey R, McGovren PJ, Endert G, Wagner A, Holewa D, Aboukameel A, Gill RD, Bisgaier CL, Messmann RA, Whitehead CE, Izbicka E, Streeper R, Wick MC, Stiegler G, Stein CA, Monsma D, Webb C, Sooch MP, Panzner S, Mohammad R, Goodwin NC, Al-Katib A.

Cancer Chemother Pharmacol. 2014 Jul;74(1):151-66. doi: 10.1007/s00280-014-2476-y. Epub 2014 May 16.


Early post-operative relief of pain and shivering using diclofenac suppository versus intravenous pethidine in spinal anesthesia.

Ebrahim AJ, Mozaffar R, Nadia BH, Ali J.

J Anaesthesiol Clin Pharmacol. 2014 Apr;30(2):243-7. doi: 10.4103/0970-9185.130038.


Determining the control circuitry of redox metabolism at the genome-scale.

Federowicz S, Kim D, Ebrahim A, Lerman J, Nagarajan H, Cho BK, Zengler K, Palsson B.

PLoS Genet. 2014 Apr 3;10(4):e1004264. doi: 10.1371/journal.pgen.1004264. eCollection 2014 Apr.


C-phycocyanin confers protection against oxalate-mediated oxidative stress and mitochondrial dysfunctions in MDCK cells.

Farooq SM, Boppana NB, Devarajan A, Sekaran SD, Shankar EM, Li C, Gopal K, Bakar SA, Karthik HS, Ebrahim AS.

PLoS One. 2014 Apr 1;9(4):e93056. doi: 10.1371/journal.pone.0093056. eCollection 2014. Erratum in: PLoS One. 2014;9(7):e103361. Asokan, Devarajan [corrected to Devarajan, Asokan].


Blockade of CXCR2 signalling: a potential therapeutic target for preventing neutrophil-mediated inflammatory diseases.

Boppana NB, Devarajan A, Gopal K, Barathan M, Bakar SA, Shankar EM, Ebrahim AS, Farooq SM.

Exp Biol Med (Maywood). 2014 May;239(5):509-18. doi: 10.1177/1535370213520110. Epub 2014 Mar 13. Review.


Modulation of deoxycytidine kinase (dCK) and glycogen synthase kinase (GSK-3β) by anti-CD20 (rituximab) and 2-chlorodeoxyadenosine (2-CdA) in human lymphoid malignancies.

Al-Katib AM, Aboukameel A, Ebrahim A, Beck FW, Tekyi-Mensah SE, Raufi A, Ahmed Y, Mandziara M, Kafri Z.

Exp Hematol Oncol. 2014 Dec 19;3:31. doi: 10.1186/2162-3619-3-31. eCollection 2014.


MR cholangiopancreatography of the pancreas and biliary system: a review of the current applications.

Hossary SH, Zytoon AA, Eid M, Hamed A, Sharaan M, Ebrahim AA.

Curr Probl Diagn Radiol. 2014 Jan-Feb;43(1):1-13. doi: 10.1067/j.cpradiol.2013.10.001. Review.


Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.

Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K.

Microb Cell Fact. 2013 Nov 25;12:118. doi: 10.1186/1475-2859-12-118.


Clinical practice guidelines for healthy eating for the prevention and treatment of metabolic and endocrine diseases in adults: cosponsored by the American Association of Clinical Endocrinologists/the American College of Endocrinology and the Obesity Society.

Gonzalez-Campoy JM, St Jeor ST, Castorino K, Ebrahim A, Hurley D, Jovanovic L, Mechanick JI, Petak SM, Yu YH, Harris KA, Kris-Etherton P, Kushner R, Molini-Blandford M, Nguyen QT, Plodkowski R, Sarwer DB, Thomas KT; American Association of Clinical Endocrinologists; American College of Endocrinology and the Obesity Society.

Endocr Pract. 2013 Sep-Oct;19 Suppl 3:1-82. doi: 10.4158/EP13155.GL. No abstract available.


Clinical practice guidelines for healthy eating for the prevention and treatment of metabolic and endocrine diseases in adults: cosponsored by the American Association of Clinical Endocrinologists/the American College of Endocrinology and the Obesity Society: executive summary.

American Association of Clinical Endocrinologists/the American College of Endocrinology; Obesity Society, Gonzalez-Campoy JM, St Jeor ST, Castorino K, Ebrahim A, Hurley D, Jovanovic L, Mechanick JI, Petak SM, Yu YH, Harris KA, Kris-Etherton P, Kushner R, Molini-Blandford M, Nguyen QT, Plodkowski R, Sarwer DB, Thomas KT; American Association of Clinical Endocrinologists/the American College of Endocrinology and the Obesity Society.

Endocr Pract. 2013 Sep-Oct;19(5):875-87. doi: 10.4158/EP13155.ESGL. No abstract available.


Ce(III) doped Zr-based MOFs as excellent NO2 adsorbents at ambient conditions.

Ebrahim AM, Bandosz TJ.

ACS Appl Mater Interfaces. 2013 Nov 13;5(21):10565-73. doi: 10.1021/am402305u. Epub 2013 Oct 23.


Targeting CD19 in B-cell lymphoma: emerging role of SAR3419.

Raufi A, Ebrahim AS, Al-Katib A.

Cancer Manag Res. 2013 Aug 27;5:225-33. doi: 10.2147/CMAR.S45957. eCollection 2013. Review.


GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data.

Schmidt BJ, Ebrahim A, Metz TO, Adkins JN, Palsson BØ, Hyduke DR.

Bioinformatics. 2013 Nov 15;29(22):2900-8. doi: 10.1093/bioinformatics/btt493. Epub 2013 Aug 23.


COBRApy: COnstraints-Based Reconstruction and Analysis for Python.

Ebrahim A, Lerman JA, Palsson BO, Hyduke DR.

BMC Syst Biol. 2013 Aug 8;7:74. doi: 10.1186/1752-0509-7-74.


Effects of carbon phase deposition in silica gel pores on NO2 reactive adsorption at ambient conditions on carbon/silica composites.

Ebrahim AM, Levasseur B, Bandosz TJ.

Langmuir. 2013 Jun 11;29(23):6895-902. doi: 10.1021/la4008137. Epub 2013 May 31.


Preoperative prescription of suppository diclofenac for spinal anesthesia.

Ebrahim AJ, Mozaffar R, Nadia BH, Ali J.

Ann Afr Med. 2013 Jan-Mar;12(1):53-4. doi: 10.4103/1596-3519.108256. No abstract available.


Case of acute, resistant fulminant Wegener's granulomatosis successfully treated by rituximab.

Ebrahim AK, Loock JW.

J Laryngol Otol. 2013 Apr;127(4):411-4. doi: 10.1017/S0022215113000340. Epub 2013 Mar 12.


Sulfide-driven microbial electrosynthesis.

Gong Y, Ebrahim A, Feist AM, Embree M, Zhang T, Lovley D, Zengler K.

Environ Sci Technol. 2013 Jan 2;47(1):568-73. doi: 10.1021/es303837j. Epub 2012 Dec 19.


Interactions of NO2 with Zr-based MOF: effects of the size of organic linkers on NO2 adsorption at ambient conditions.

Ebrahim AM, Levasseur B, Bandosz TJ.

Langmuir. 2013 Jan 8;29(1):168-74. doi: 10.1021/la302869m. Epub 2012 Dec 18.


Adenosine monophosphate-activated protein kinase overactivation leads to accumulation of α-synuclein oligomers and decrease of neurites.

Jiang P, Gan M, Ebrahim AS, Castanedes-Casey M, Dickson DW, Yen SH.

Neurobiol Aging. 2013 May;34(5):1504-15. doi: 10.1016/j.neurobiolaging.2012.11.001. Epub 2012 Nov 28.


Hepatoprotective effects of hydroalcoholic extract of Allium hirtifolium (Persian shallot) in diabetic rats.

Javad H, Seyed-Mostafa HZ, Farhad O, Mehdi M, Ebrahim AO, Nader RG, Ramin GS, Behrooz H.

J Basic Clin Physiol Pharmacol. 2012;23(2):83-7. doi: 10.1515/jbcpp-2012-0017.


Hearing loss in children treated for multidrug-resistant tuberculosis.

Seddon JA, Thee S, Jacobs K, Ebrahim A, Hesseling AC, Schaaf HS.

J Infect. 2013 Apr;66(4):320-9. doi: 10.1016/j.jinf.2012.09.002. Epub 2012 Sep 6.


Characteristics of TBS-extractable hyperphosphorylated tau species: aggregation intermediates in rTg4510 mouse brain.

Sahara N, DeTure M, Ren Y, Ebrahim AS, Kang D, Knight J, Volbracht C, Pedersen JT, Dickson DW, Yen SH, Lewis J.

J Alzheimers Dis. 2013;33(1):249-63. doi: 10.3233/JAD-2012-121093.


Hearing loss in patients on treatment for drug-resistant tuberculosis.

Seddon JA, Godfrey-Faussett P, Jacobs K, Ebrahim A, Hesseling AC, Schaaf HS.

Eur Respir J. 2012 Nov;40(5):1277-86. doi: 10.1183/09031936.00044812. Epub 2012 Jun 14. Review.


Mesoporous silica SBA-15 modified with copper as an efficient NO2 adsorbent at ambient conditions.

Levasseur B, Ebrahim AM, Bandosz TJ.

J Colloid Interface Sci. 2012 Jul 1;377(1):347-54. doi: 10.1016/j.jcis.2012.03.072. Epub 2012 Apr 1.


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