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Items: 36


Discriminant analysis of principal components and pedigree assessment of genetic diversity and population structure in a tetraploid potato panel using SNPs.

Deperi SI, Tagliotti ME, Bedogni MC, Manrique-Carpintero NC, Coombs J, Zhang R, Douches D, Huarte MA.

PLoS One. 2018 Mar 16;13(3):e0194398. doi: 10.1371/journal.pone.0194398. eCollection 2018.


Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato.

Endelman JB, Schmitz Carley CA, Bethke PC, Coombs JJ, Clough ME, da Silva WL, De Jong WS, Douches DS, Frederick CM, Haynes KG, Holm DG, Miller JC Jr., Muñoz PR, Navarro FM, Novy RG, Palta JP, Porter GA, Rak KT, Sathuvalli VR, Thompson AL, Yencho GC.

Genetics. 2018 Mar 7. pii: genetics.300685.2018. doi: 10.1534/genetics.118.300685. [Epub ahead of print]


Genome sequence of M6, a diploid inbred clone of the high glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity.

Leisner CP, Hamilton JP, Crisovan E, Manrique-Carpintero NC, Marand AP, Newton L, Pham GM, Jiang J, Douches DS, Jansky SH, Buell CR.

Plant J. 2018 Feb 5. doi: 10.1111/tpj.13857. [Epub ahead of print]


Use of easy measurable phenotypic traits as a complementary approach to evaluate the population structure and diversity in a high heterozygous panel of tetraploid clones and cultivars.

Tagliotti ME, Deperi SI, Bedogni MC, Zhang R, Manrique Carpintero NC, Coombs J, Douches D, Huarte MA.

BMC Genet. 2018 Jan 16;19(1):8. doi: 10.1186/s12863-017-0556-9.


Impact of choice of future climate change projection on growth chamber experimental outcomes: a preliminary study in potato.

Leisner CP, Wood JC, Vaillancourt B, Tang Y, Douches DS, Robin Buell C, Winkler JA.

Int J Biometeorol. 2017 Nov 23. doi: 10.1007/s00484-017-1475-1. [Epub ahead of print]


Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato.

Hardigan MA, Laimbeer FPE, Newton L, Crisovan E, Hamilton JP, Vaillancourt B, Wiegert-Rininger K, Wood JC, Douches DS, Farré EM, Veilleux RE, Buell CR.

Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):E9999-E10008. doi: 10.1073/pnas.1714380114. Epub 2017 Oct 30.


Mapping Loci That Control Tuber and Foliar Symptoms Caused by PVY in Autotetraploid Potato (Solanum tuberosum L.).

da Silva WL, Ingram J, Hackett CA, Coombs JJ, Douches D, Bryan GJ, De Jong W, Gray S.

G3 (Bethesda). 2017 Nov 6;7(11):3587-3595. doi: 10.1534/g3.117.300264.


Extensive genome heterogeneity leads to preferential allele expression and copy number-dependent expression in cultivated potato.

Pham GM, Newton L, Wiegert-Rininger K, Vaillancourt B, Douches DS, Buell CR.

Plant J. 2017 Nov;92(4):624-637. doi: 10.1111/tpj.13706. Epub 2017 Oct 16.


Automated tetraploid genotype calling by hierarchical clustering.

Schmitz Carley CA, Coombs JJ, Douches DS, Bethke PC, Palta JP, Novy RG, Endelman JB.

Theor Appl Genet. 2017 Apr;130(4):717-726. doi: 10.1007/s00122-016-2845-5. Epub 2017 Jan 9.


Self-Fertility in a Cultivated Diploid Potato Population Examined with the Infinium 8303 Potato Single-Nucleotide Polymorphism Array.

Peterson BA, Holt SH, Laimbeer FP, Doulis AG, Coombs J, Douches DS, Hardigan MA, Buell CR, Veilleux RE.

Plant Genome. 2016 Nov;9(3). doi: 10.3835/plantgenome2016.01.0003.


Software for Genome-Wide Association Studies in Autopolyploids and Its Application to Potato.

Rosyara UR, De Jong WS, Douches DS, Endelman JB.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.08.0073.


Geminivirus-Mediated Genome Editing in Potato (Solanum tuberosum L.) Using Sequence-Specific Nucleases.

Butler NM, Baltes NJ, Voytas DF, Douches DS.

Front Plant Sci. 2016 Jul 21;7:1045. doi: 10.3389/fpls.2016.01045. eCollection 2016.


Comparative Analysis of Regions with Distorted Segregation in Three Diploid Populations of Potato.

Manrique-Carpintero NC, Coombs JJ, Veilleux RE, Buell CR, Douches DS.

G3 (Bethesda). 2016 Aug 9;6(8):2617-28. doi: 10.1534/g3.116.030031.


Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum.

Hardigan MA, Crisovan E, Hamilton JP, Kim J, Laimbeer P, Leisner CP, Manrique-Carpintero NC, Newton L, Pham GM, Vaillancourt B, Yang X, Zeng Z, Douches DS, Jiang J, Veilleux RE, Buell CR.

Plant Cell. 2016 Feb;28(2):388-405. doi: 10.1105/tpc.15.00538. Epub 2016 Jan 15.


Generation and Inheritance of Targeted Mutations in Potato (Solanum tuberosum L.) Using the CRISPR/Cas System.

Butler NM, Atkins PA, Voytas DF, Douches DS.

PLoS One. 2015 Dec 14;10(12):e0144591. doi: 10.1371/journal.pone.0144591. eCollection 2015.


Genetic Linkage Mapping of Economically Important Traits in Cultivated Tetraploid Potato (Solanum tuberosum L.).

Massa AN, Manrique-Carpintero NC, Coombs JJ, Zarka DG, Boone AE, Kirk WW, Hackett CA, Bryan GJ, Douches DS.

G3 (Bethesda). 2015 Sep 14;5(11):2357-64. doi: 10.1534/g3.115.019646.


Treatment of potato tubers with the synthetic cytokinin 1-(α-ethylbenzyl)-3-nitroguanidine results in rapid termination of endodormancy and induction of transcripts associated with cell proliferation and growth.

Campbell M, Suttle J, Douches DS, Buell CR.

Funct Integr Genomics. 2014 Dec;14(4):789-99. doi: 10.1007/s10142-014-0404-1. Epub 2014 Oct 1.


Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps.

Sharma SK, Bolser D, de Boer J, Sønderkær M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS, Eguiluz M, Guo X, Guzman F, Hackett CA, Hamilton JP, Li G, Li Y, Lozano R, Maass A, Marshall D, Martinez D, McLean K, Mejía N, Milne L, Munive S, Nagy I, Ponce O, Ramirez M, Simon R, Thomson SJ, Torres Y, Waugh R, Zhang Z, Huang S, Visser RG, Bachem CW, Sagredo B, Feingold SE, Orjeda G, Veilleux RE, Bonierbale M, Jacobs JM, Milbourne D, Martin DM, Bryan GJ.

G3 (Bethesda). 2013 Nov 6;3(11):2031-47. doi: 10.1534/g3.113.007153.


Segregation and efficacy of the cry1Ia1 gene for control of potato tuberworm in four populations of cultivated potato.

Douches DS, Coombs JJ, Felcher KJ, Zuehlke M, Pett W, Szendrei Z, Brink J.

J Econ Entomol. 2013 Apr;106(2):1025-8.


Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries.

Hirsch CN, Hirsch CD, Felcher K, Coombs J, Zarka D, Van Deynze A, De Jong W, Veilleux RE, Jansky S, Bethke P, Douches DS, Buell CR.

G3 (Bethesda). 2013 Jun 21;3(6):1003-13. doi: 10.1534/g3.113.005595.


High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding.

Sim SC, Van Deynze A, Stoffel K, Douches DS, Zarka D, Ganal MW, Chetelat RT, Hutton SF, Scott JW, Gardner RG, Panthee DR, Mutschler M, Myers JR, Francis DM.

PLoS One. 2012;7(9):e45520. doi: 10.1371/journal.pone.0045520. Epub 2012 Sep 20.


Integration of two diploid potato linkage maps with the potato genome sequence.

Felcher KJ, Coombs JJ, Massa AN, Hansey CN, Hamilton JP, Veilleux RE, Buell CR, Douches DS.

PLoS One. 2012;7(4):e36347. doi: 10.1371/journal.pone.0036347. Epub 2012 Apr 27.


Single nucleotide polymorphism discovery in elite North American potato germplasm.

Hamilton JP, Hansey CN, Whitty BR, Stoffel K, Massa AN, Van Deynze A, De Jong WS, Douches DS, Buell CR.

BMC Genomics. 2011 Jun 9;12:302. doi: 10.1186/1471-2164-12-302.


Evaluation of natural and engineered resistance mechanisms in potato against Colorado potato beetle in a no-choice field study.

Cooper SG, Douches DS, Coombs JJ, Grafius EJ.

J Econ Entomol. 2007 Apr;100(2):573-9.


Accumulation of vitamin E in potato (Solanum tuberosum) tubers.

Crowell EF, McGrath JM, Douches DS.

Transgenic Res. 2008 Apr;17(2):205-17. Epub 2007 Apr 6.


Field and storage testing Bt potatoes for resistance to potato tuberworm (Lepidoptera: Gelichiidae).

Douches DS, Pett W, Santos F, Coombs J, Grafius E, Li W, Metry EA, el-Din TN, Madkour M.

J Econ Entomol. 2004 Aug;97(4):1425-31.


Evaluation of potato tuber moth (Lepidoptera: Gelechiidae) resistance in tubers of Bt-cry5 transgenic potato lines.

Mohammed A, Douches DS, Pett W, Grafius E, Coombs J, Liswidowati, Li W, Madkour MA.

J Econ Entomol. 2000 Apr;93(2):472-6.


Comparison of four molecular markers in measuring relationships among the wild potato relatives Solanum section Etuberosum (subgenus Potatoe).

Spooner DM, Tivang J, Nienhuis J, Miller JT, Douches DS, Contreras-M A.

Theor Appl Genet. 1996 Apr;92(5):532-40. doi: 10.1007/BF00224555.


Quantitative trait locus analysis of tuber dormancy in diploid potato (Solanum spp.).

Freyre R, Warnke S, Sosinski B, Douches DS.

Theor Appl Genet. 1994 Oct;89(4):474-80. doi: 10.1007/BF00225383.


Estimation of the coefficient of double reduction in the cultivated tetraploid potato.

Haynes KG, Douches DS.

Theor Appl Genet. 1993 Feb;85(6-7):857-62. doi: 10.1007/BF00225029.


Isozyme and plastid DNA assessment of pedigrees of nineteenth century potato cultivars.

Douches DS, Ludlam K, Freyre R.

Theor Appl Genet. 1991 Aug;82(2):195-200. doi: 10.1007/BF00226213.


Analysis of the Brassica oleracea genome by the generation of B. campestris-oleracea chromosome addition lines: characterization by isozymes and rDNA genes.

Quiros CF, Ochoa O, Kianian SF, Douches D.

Theor Appl Genet. 1987 Oct;74(6):758-66. doi: 10.1007/BF00247554.


Inheritance of annual habit in celery: cosegregation with isozyme and anthocyanin markers.

Quiros CF, Douches D, D'Antonio V.

Theor Appl Genet. 1987 Jun;74(2):203-8. doi: 10.1007/BF00289969.


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