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Items: 24

1.

Serine/Threonine Protein Kinases from Bacteria, Archaea and Eukarya Share a Common Evolutionary Origin Deeply Rooted in the Tree of Life.

Stancik IA, Šestak MS, Ji B, Axelson-Fisk M, Franjevic D, Jers C, Domazet-Lošo T, Mijakovic I.

J Mol Biol. 2018 Jan 5;430(1):27-32. doi: 10.1016/j.jmb.2017.11.004. Epub 2017 Nov 11.

2.

Tracing the dynamics of gene transcripts after organismal death.

Pozhitkov AE, Neme R, Domazet-Lošo T, Leroux BG, Soni S, Tautz D, Noble PA.

Open Biol. 2017 Jan;7(1). pii: 160267. doi: 10.1098/rsob.160267.

3.

No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution.

Domazet-Lošo T, Carvunis AR, Albà MM, Šestak MS, Bakaric R, Neme R, Tautz D.

Mol Biol Evol. 2017 Apr 1;34(4):843-856. doi: 10.1093/molbev/msw284.

4.

Back to the Basics: Cnidarians Start to Fire.

Bosch TCG, Klimovich A, Domazet-Lošo T, Gründer S, Holstein TW, Jékely G, Miller DJ, Murillo-Rincon AP, Rentzsch F, Richards GS, Schröder K, Technau U, Yuste R.

Trends Neurosci. 2017 Feb;40(2):92-105. doi: 10.1016/j.tins.2016.11.005. Epub 2016 Dec 30. Review.

5.

gmos: Rapid Detection of Genome Mosaicism over Short Evolutionary Distances.

Domazet-Lošo M, Domazet-Lošo T.

PLoS One. 2016 Nov 15;11(11):e0166602. doi: 10.1371/journal.pone.0166602. eCollection 2016.

6.

High expression of new genes in trochophore enlightening the ontogeny and evolution of trochozoans.

Xu F, Domazet-Lošo T, Fan D, Dunwell TL, Li L, Fang X, Zhang G.

Sci Rep. 2016 Oct 4;6:34664. doi: 10.1038/srep34664.

7.

Phylostratigraphic profiles in zebrafish uncover chordate origins of the vertebrate brain.

Šestak MS, Domazet-Lošo T.

Mol Biol Evol. 2015 Feb;32(2):299-312. doi: 10.1093/molbev/msu319. Epub 2014 Nov 17.

8.

How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans.

Bosch TC, Adamska M, Augustin R, Domazet-Loso T, Foret S, Fraune S, Funayama N, Grasis J, Hamada M, Hatta M, Hobmayer B, Kawai K, Klimovich A, Manuel M, Shinzato C, Technau U, Yum S, Miller DJ.

Bioessays. 2014 Dec;36(12):1185-94. doi: 10.1002/bies.201400065. Epub 2014 Sep 10.

9.

Naturally occurring tumours in the basal metazoan Hydra.

Domazet-Lošo T, Klimovich A, Anokhin B, Anton-Erxleben F, Hamm MJ, Lange C, Bosch TC.

Nat Commun. 2014 Jun 24;5:4222. doi: 10.1038/ncomms5222.

PMID:
24957317
10.

Regulation of polyp-to-jellyfish transition in Aurelia aurita.

Fuchs B, Wang W, Graspeuntner S, Li Y, Insua S, Herbst EM, Dirksen P, Böhm AM, Hemmrich G, Sommer F, Domazet-Lošo T, Klostermeier UC, Anton-Erxleben F, Rosenstiel P, Bosch TC, Khalturin K.

Curr Biol. 2014 Feb 3;24(3):263-73. doi: 10.1016/j.cub.2013.12.003. Epub 2014 Jan 16.

11.

Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.

de Mendoza A, Sebé-Pedrós A, Šestak MS, Matejcic M, Torruella G, Domazet-Loso T, Ruiz-Trillo I.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):E4858-66. doi: 10.1073/pnas.1311818110. Epub 2013 Nov 25.

12.

Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems.

Sestak MS, Božičević V, Bakarić R, Dunjko V, Domazet-Lošo T.

Front Zool. 2013 Apr 12;10(1):18. doi: 10.1186/1742-9994-10-18.

13.

Animals in a bacterial world, a new imperative for the life sciences.

McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M, Sanders JG, Tautz D, Wernegreen JJ.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3229-36. doi: 10.1073/pnas.1218525110. Epub 2013 Feb 7. Review.

14.

MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers.

Franzenburg S, Fraune S, Künzel S, Baines JF, Domazet-Loso T, Bosch TC.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19374-9. doi: 10.1073/pnas.1213110109. Epub 2012 Oct 29.

15.

The oyster genome reveals stress adaptation and complexity of shell formation.

Zhang G, Fang X, Guo X, Li L, Luo R, Xu F, Yang P, Zhang L, Wang X, Qi H, Xiong Z, Que H, Xie Y, Holland PW, Paps J, Zhu Y, Wu F, Chen Y, Wang J, Peng C, Meng J, Yang L, Liu J, Wen B, Zhang N, Huang Z, Zhu Q, Feng Y, Mount A, Hedgecock D, Xu Z, Liu Y, Domazet-Lošo T, Du Y, Sun X, Zhang S, Liu B, Cheng P, Jiang X, Li J, Fan D, Wang W, Fu W, Wang T, Wang B, Zhang J, Peng Z, Li Y, Li N, Wang J, Chen M, He Y, Tan F, Song X, Zheng Q, Huang R, Yang H, Du X, Chen L, Yang M, Gaffney PM, Wang S, Luo L, She Z, Ming Y, Huang W, Zhang S, Huang B, Zhang Y, Qu T, Ni P, Miao G, Wang J, Wang Q, Steinberg CE, Wang H, Li N, Qian L, Zhang G, Li Y, Yang H, Liu X, Wang J, Yin Y, Wang J.

Nature. 2012 Oct 4;490(7418):49-54. doi: 10.1038/nature11413. Epub 2012 Sep 19.

PMID:
22992520
16.

Molecular signatures of the three stem cell lineages in hydra and the emergence of stem cell function at the base of multicellularity.

Hemmrich G, Khalturin K, Boehm AM, Puchert M, Anton-Erxleben F, Wittlieb J, Klostermeier UC, Rosenstiel P, Oberg HH, Domazet-Loso T, Sugimoto T, Niwa H, Bosch TC.

Mol Biol Evol. 2012 Nov;29(11):3267-80. doi: 10.1093/molbev/mss134. Epub 2012 May 16.

PMID:
22595987
17.

The evolutionary origin of orphan genes.

Tautz D, Domazet-Lošo T.

Nat Rev Genet. 2011 Aug 31;12(10):692-702. doi: 10.1038/nrg3053. Review.

PMID:
21878963
18.

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns.

Domazet-Lošo T, Tautz D.

Nature. 2010 Dec 9;468(7325):815-8. doi: 10.1038/nature09632.

PMID:
21150997
19.

Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa.

Domazet-Loso T, Tautz D.

BMC Biol. 2010 May 21;8:66. doi: 10.1186/1741-7007-8-66.

20.

An ancient evolutionary origin of genes associated with human genetic diseases.

Domazet-Loso T, Tautz D.

Mol Biol Evol. 2008 Dec;25(12):2699-707. doi: 10.1093/molbev/msn214. Epub 2008 Sep 26.

21.

A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages.

Domazet-Loso T, Brajković J, Tautz D.

Trends Genet. 2007 Nov;23(11):533-9.

PMID:
18029048
22.

Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted.

Pozhitkov A, Noble PA, Domazet-Loso T, Nolte AW, Sonnenberg R, Staehler P, Beier M, Tautz D.

Nucleic Acids Res. 2006 May 17;34(9):e66.

23.

Correlated evolution of synonymous and nonsynonymous sites in Drosophila.

Marais G, Domazet-Loso T, Tautz D, Charlesworth B.

J Mol Evol. 2004 Dec;59(6):771-9.

PMID:
15599509
24.

An evolutionary analysis of orphan genes in Drosophila.

Domazet-Loso T, Tautz D.

Genome Res. 2003 Oct;13(10):2213-9.

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