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Items: 9


Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification.

Brewer BJ, Payen C, Di Rienzi SC, Higgins MM, Ong G, Dunham MJ, Raghuraman MK.

PLoS Genet. 2015 Dec 23;11(12):e1005699. doi: 10.1371/journal.pgen.1005699. eCollection 2015 Dec.


Novel Rhizosphere Soil Alleles for the Enzyme 1-Aminocyclopropane-1-Carboxylate Deaminase Queried for Function with an In Vivo Competition Assay.

Jin Z, Di Rienzi SC, Janzon A, Werner JJ, Angenent LT, Dangl JL, Fowler DM, Ley RE.

Appl Environ Microbiol. 2015 Dec 4;82(4):1050-9. doi: 10.1128/AEM.03074-15. Print 2016 Feb 15.


Conducting a microbiome study.

Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, Knight R, Ley RE.

Cell. 2014 Jul 17;158(2):250-262. doi: 10.1016/j.cell.2014.06.037.


The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection.

Payen C, Di Rienzi SC, Ong GT, Pogachar JL, Sanchez JC, Sunshine AB, Raghuraman MK, Brewer BJ, Dunham MJ.

G3 (Bethesda). 2014 Mar 20;4(3):399-409. doi: 10.1534/g3.113.009365.


The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria.

Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE.

Elife. 2013 Oct 1;2:e01102. doi: 10.7554/eLife.01102.


Maintaining replication origins in the face of genomic change.

Di Rienzi SC, Lindstrom KC, Mann T, Noble WS, Raghuraman MK, Brewer BJ.

Genome Res. 2012 Oct;22(10):1940-52. doi: 10.1101/gr.138248.112. Epub 2012 Jun 4.


Replication stress-induced chromosome breakage is correlated with replication fork progression and is preceded by single-stranded DNA formation.

Feng W, Di Rienzi SC, Raghuraman MK, Brewer BJ.

G3 (Bethesda). 2011 Oct;1(5):327-35. doi: 10.1534/g3.111.000554. Epub 2011 Oct 1.


Genetic, genomic, and molecular tools for studying the protoploid yeast, L. waltii.

Di Rienzi SC, Lindstrom KC, Lancaster R, Rolczynski L, Raghuraman MK, Brewer BJ.

Yeast. 2011 Feb;28(2):137-51. doi: 10.1002/yea.1826. Epub 2010 Nov 2.


Fragile genomic sites are associated with origins of replication.

Di Rienzi SC, Collingwood D, Raghuraman MK, Brewer BJ.

Genome Biol Evol. 2009 Sep 9;1:350-63. doi: 10.1093/gbe/evp034.

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