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Items: 38


Chemo- and Regioselective Lysine Modification on Native Proteins.

Matos MJ, Oliveira BL, Martínez-Sáez N, Guerreiro A, Cal PMSD, Bertoldo J, Maneiro M, Perkins E, Howard J, Deery MJ, Chalker JM, Corzana F, Jiménez-Osés G, Bernardes GJL.

J Am Chem Soc. 2018 Mar 8. doi: 10.1021/jacs.7b12874. [Epub ahead of print]


Stat3 mediated alterations in lysosomal membrane protein composition.

Lloyd-Lewis B, Krueger CC, Sargeant TJ, D'Angelo ME, Deery MJ, Feret R, Howard JA, Lilley KS, Watson CJ.

J Biol Chem. 2018 Jan 17. pii: jbc.RA118.001777. doi: 10.1074/jbc.RA118.001777. [Epub ahead of print]


N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway.

Zhang H, Gannon L, Hassall KL, Deery MJ, Gibbs DJ, Holdsworth MJ, van der Hoorn RAL, Lilley KS, Theodoulou FL.

New Phytol. 2017 Nov 23. doi: 10.1111/nph.14909. [Epub ahead of print]


Ketamine's antidepressant effect is mediated by energy metabolism and antioxidant defense system.

Weckmann K, Deery MJ, Howard JA, Feret R, Asara JM, Dethloff F, Filiou MD, Iannace J, Labermaier C, Maccarrone G, Webhofer C, Teplytska L, Lilley K, Müller MB, Turck CW.

Sci Rep. 2017 Nov 17;7(1):15788. doi: 10.1038/s41598-017-16183-x.


Functional reconstruction of a eukaryotic-like E1/E2/(RING) E3 ubiquitylation cascade from an uncultured archaeon.

Hennell James R, Caceres EF, Escasinas A, Alhasan H, Howard JA, Deery MJ, Ettema TJG, Robinson NP.

Nat Commun. 2017 Oct 24;8(1):1120. doi: 10.1038/s41467-017-01162-7.


Multiple marker abundance profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples.

Hooper CM, Stevens TJ, Saukkonen A, Castleden IR, Singh P, Mann GW, Fabre B, Ito J, Deery MJ, Lilley KS, Petzold CJ, Millar AH, Heazlewood JL, Parsons HT.

Plant J. 2017 Dec;92(6):1202-1217. doi: 10.1111/tpj.13743. Epub 2017 Nov 20.


Endogenous miRNA in the green alga Chlamydomonas regulates gene expression through CDS-targeting.

Chung BY, Deery MJ, Groen AJ, Howard J, Baulcombe DC.

Nat Plants. 2017 Oct;3(10):787-794. doi: 10.1038/s41477-017-0024-6. Epub 2017 Oct 2.


Oxetane Grafts Installed Site-Selectively on Native Disulfides to Enhance Protein Stability and Activity In Vivo.

Martínez-Sáez N, Sun S, Oldrini D, Sormanni P, Boutureira O, Carboni F, Compañón I, Deery MJ, Vendruscolo M, Corzana F, Adamo R, Bernardes GJL.

Angew Chem Int Ed Engl. 2017 Nov 20;56(47):14963-14967. doi: 10.1002/anie.201708847. Epub 2017 Oct 20.


Spectral Libraries for SWATH-MS Assays for Drosophila melanogaster and Solanum lycopersicum.

Fabre B, Korona D, Mata CI, Parsons HT, Deery MJ, Hertog MLATM, Nicolaï BM, Russell S, Lilley KS.

Proteomics. 2017 Nov;17(21). doi: 10.1002/pmic.201700216.


TREM2 shedding by cleavage at the H157-S158 bond is accelerated for the Alzheimer's disease-associated H157Y variant.

Thornton P, Sevalle J, Deery MJ, Fraser G, Zhou Y, Ståhl S, Franssen EH, Dodd RB, Qamar S, Gomez Perez-Nievas B, Nicol LS, Eketjäll S, Revell J, Jones C, Billinton A, St George-Hyslop PH, Chessell I, Crowther DC.

EMBO Mol Med. 2017 Oct;9(10):1366-1378. doi: 10.15252/emmm.201707673.


Using hyperLOPIT to perform high-resolution mapping of the spatial proteome.

Mulvey CM, Breckels LM, Geladaki A, Britovšek NK, Nightingale DJH, Christoforou A, Elzek M, Deery MJ, Gatto L, Lilley KS.

Nat Protoc. 2017 Jun;12(6):1110-1135. doi: 10.1038/nprot.2017.026. Epub 2017 May 4.


In-depth characterization of the tomato fruit pericarp proteome.

Mata CI, Fabre B, Hertog ML, Parsons HT, Deery MJ, Lilley KS, Nicolaï BM.

Proteomics. 2017 Jan;17(1-2). doi: 10.1002/pmic.201600406.


Allele-Independent Turnover of Human Leukocyte Antigen (HLA) Class Ia Molecules.

Prevosto C, Usmani MF, McDonald S, Gumienny AM, Key T, Goodman RS, Gaston JS, Deery MJ, Busch R.

PLoS One. 2016 Aug 16;11(8):e0161011. doi: 10.1371/journal.pone.0161011. eCollection 2016.


ATP-dependent substrate transport by the ABC transporter MsbA is proton-coupled.

Singh H, Velamakanni S, Deery MJ, Howard J, Wei SL, van Veen HW.

Nat Commun. 2016 Aug 8;7:12387. doi: 10.1038/ncomms12387.


The Nucleosome Remodeling and Deacetylase Complex NuRD Is Built from Preformed Catalytically Active Sub-modules.

Zhang W, Aubert A, Gomez de Segura JM, Karuppasamy M, Basu S, Murthy AS, Diamante A, Drury TA, Balmer J, Cramard J, Watson AA, Lando D, Lee SF, Palayret M, Kloet SL, Smits AH, Deery MJ, Vermeulen M, Hendrich B, Klenerman D, Schaffitzel C, Berger I, Laue ED.

J Mol Biol. 2016 Jul 17;428(14):2931-42. doi: 10.1016/j.jmb.2016.04.025. Epub 2016 Apr 23.


Analysis of Drosophila melanogaster proteome dynamics during embryonic development by a combination of label-free proteomics approaches.

Fabre B, Korona D, Groen A, Vowinckel J, Gatto L, Deery MJ, Ralser M, Russell S, Lilley KS.

Proteomics. 2016 Aug;16(15-16):2068-80. doi: 10.1002/pmic.201500482. Epub 2016 May 10.


Analysis of temperature-mediated changes in the wine yeast Saccharomyces bayanus var uvarum. An oenological study of how the protein content influences wine quality.

Muñoz-Bernal E, Deery MJ, Rodríguez ME, Cantoral JM, Howard J, Feret R, Natera R, Lilley KS, Fernández-Acero FJ.

Proteomics. 2016 Feb;16(4):576-92. doi: 10.1002/pmic.201500137. Epub 2016 Jan 25.


Sex-Related Differences in Rat Choroid Plexus and Cerebrospinal Fluid: A cDNA Microarray and Proteomic Analysis.

Quintela T, Marcelino H, Deery MJ, Feret R, Howard J, Lilley KS, Albuquerque T, Gonçalves I, Duarte AC, Santos CR.

J Neuroendocrinol. 2016 Jan;28(1). doi: 10.1111/jne.12340.


Involvement of a eukaryotic-like ubiquitin-related modifier in the proteasome pathway of the archaeon Sulfolobus acidocaldarius.

Anjum RS, Bray SM, Blackwood JK, Kilkenny ML, Coelho MA, Foster BM, Li S, Howard JA, Pellegrini L, Albers SV, Deery MJ, Robinson NP.

Nat Commun. 2015 Sep 8;6:8163. doi: 10.1038/ncomms9163.


Dynamic Proteomic Profiling of Extra-Embryonic Endoderm Differentiation in Mouse Embryonic Stem Cells.

Mulvey CM, Schröter C, Gatto L, Dikicioglu D, Fidaner IB, Christoforou A, Deery MJ, Cho LT, Niakan KK, Martinez-Arias A, Lilley KS.

Stem Cells. 2015 Sep;33(9):2712-25. doi: 10.1002/stem.2067. Epub 2015 Jun 23.


High-Resolution Mass Spectrometry Based Proteomic Analysis of the Response to Vancomycin-Induced Cell Wall Stress in Streptomyces coelicolor A3(2).

Hesketh A, Deery MJ, Hong HJ.

J Proteome Res. 2015 Jul 2;14(7):2915-28. doi: 10.1021/acs.jproteome.5b00242. Epub 2015 May 29.


Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots.

Zhang H, Deery MJ, Gannon L, Powers SJ, Lilley KS, Theodoulou FL.

Proteomics. 2015 Jul;15(14):2447-57. doi: 10.1002/pmic.201400530. Epub 2015 Apr 17.


Protein arginine methyltransferase 5 is a key regulator of the MYCN oncoprotein in neuroblastoma cells.

Park JH, Szemes M, Vieira GC, Melegh Z, Malik S, Heesom KJ, Von Wallwitz-Freitas L, Greenhough A, Brown KW, Zheng YG, Catchpoole D, Deery MJ, Malik K.

Mol Oncol. 2015 Mar;9(3):617-27. doi: 10.1016/j.molonc.2014.10.015. Epub 2014 Nov 15.


Sperm and spermatids contain different proteins and bind distinct egg factors.

Teperek M, Miyamoto K, Simeone A, Feret R, Deery MJ, Gurdon JB, Jullien J.

Int J Mol Sci. 2014 Sep 19;15(9):16719-40. doi: 10.3390/ijms150916719.


Dynamic regulation of the COP9 signalosome in response to DNA damage.

Füzesi-Levi MG, Ben-Nissan G, Bianchi E, Zhou H, Deery MJ, Lilley KS, Levin Y, Sharon M.

Mol Cell Biol. 2014 Mar;34(6):1066-76. doi: 10.1128/MCB.01598-13. Epub 2014 Jan 13.


Accelerated turnover of MHC class II molecules in nonobese diabetic mice is developmentally and environmentally regulated in vivo and dispensable for autoimmunity.

De Riva A, Varley MC, Bluck LJ, Cooke A, Deery MJ, Busch R.

J Immunol. 2013 Jun 15;190(12):5961-71. doi: 10.4049/jimmunol.1300551. Epub 2013 May 15.


The beauty of being (label)-free: sample preparation methods for SWATH-MS and next-generation targeted proteomics.

Vowinckel J, Capuano F, Campbell K, Deery MJ, Lilley KS, Ralser M.

Version 2. F1000Res. 2013 Dec 13 [revised 2014 Jan 1];2:272. doi: 10.12688/f1000research.2-272.v2. eCollection 2013.


Functional analysis of centrosomal kinase substrates in Drosophila melanogaster reveals a new function of the nuclear envelope component otefin in cell cycle progression.

Habermann K, Mirgorodskaya E, Gobom J, Lehmann V, Müller H, Blümlein K, Deery MJ, Czogiel I, Erdmann C, Ralser M, von Kries JP, Lange BM.

Mol Cell Biol. 2012 Sep;32(17):3554-69. doi: 10.1128/MCB.00814-12. Epub 2012 Jul 2.


The PHD and chromo domains regulate the ATPase activity of the human chromatin remodeler CHD4.

Watson AA, Mahajan P, Mertens HD, Deery MJ, Zhang W, Pham P, Du X, Bartke T, Zhang W, Edlich C, Berridge G, Chen Y, Burgess-Brown NA, Kouzarides T, Wiechens N, Owen-Hughes T, Svergun DI, Gileadi O, Laue ED.

J Mol Biol. 2012 Sep 7;422(1):3-17. doi: 10.1016/j.jmb.2012.04.031. Epub 2012 May 7.


Challenges for proteomics core facilities.

Lilley KS, Deery MJ, Gatto L.

Proteomics. 2011 Mar;11(6):1017-25. doi: 10.1002/pmic.201000693. Epub 2011 Feb 16.


Proteomics of cryoprotective dehydration in Megaphorura arctica Tullberg 1876 (Onychiuridae: Collembola).

Thorne MA, Worland MR, Feret R, Deery MJ, Lilley KS, Clark MS.

Insect Mol Biol. 2011 Jun;20(3):303-10. doi: 10.1111/j.1365-2583.2010.01062.x. Epub 2010 Dec 29.


Measurement of protein synthesis using heavy water labeling and peptide mass spectrometry: Discrimination between major histocompatibility complex allotypes.

De Riva A, Deery MJ, McDonald S, Lund T, Busch R.

Anal Biochem. 2010 Aug;403(1-2):1-12. doi: 10.1016/j.ab.2010.04.018. Epub 2010 Apr 18.


Proteomic analysis reveals the role of synaptic vesicle cycling in sustaining the suprachiasmatic circadian clock.

Deery MJ, Maywood ES, Chesham JE, Sládek M, Karp NA, Green EW, Charles PD, Reddy AB, Kyriacou CP, Lilley KS, Hastings MH.

Curr Biol. 2009 Dec 15;19(23):2031-6. doi: 10.1016/j.cub.2009.10.024. Epub 2009 Nov 12.


Sequestration of Polo kinase to microtubules by phosphopriming-independent binding to Map205 is relieved by phosphorylation at a CDK site in mitosis.

Archambault V, D'Avino PP, Deery MJ, Lilley KS, Glover DM.

Genes Dev. 2008 Oct 1;22(19):2707-20. doi: 10.1101/gad.486808.


A systematic approach to modeling, capturing, and disseminating proteomics experimental data.

Taylor CF, Paton NW, Garwood KL, Kirby PD, Stead DA, Yin Z, Deutsch EW, Selway L, Walker J, Riba-Garcia I, Mohammed S, Deery MJ, Howard JA, Dunkley T, Aebersold R, Kell DB, Lilley KS, Roepstorff P, Yates JR 3rd, Brass A, Brown AJ, Cash P, Gaskell SJ, Hubbard SJ, Oliver SG.

Nat Biotechnol. 2003 Mar;21(3):247-54.


Precursor ion scanning for detection and structural characterization of heterogeneous glycopeptide mixtures.

Ritchie MA, Gill AC, Deery MJ, Lilley K.

J Am Soc Mass Spectrom. 2002 Sep;13(9):1065-77.


Size exclusion chromatography/mass spectrometry applied to the analysis of polysaccharides.

Deery MJ, Stimson E, Chappell CG.

Rapid Commun Mass Spectrom. 2001;15(23):2273-83.


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