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Items: 43


Candidate lethal haplotypes and causal mutations in Angus cattle.

Hoff JL, Decker JE, Schnabel RD, Taylor JF.

BMC Genomics. 2017 Oct 18;18(1):799. doi: 10.1186/s12864-017-4196-2.


Genetic diversity and population structure of South African smallholder farmer sheep breeds determined using the OvineSNP50 beadchip.

Molotsi AH, Taylor JF, Cloete SWP, Muchadeyi F, Decker JE, Whitacre LK, Sandenbergh L, Dzama K.

Trop Anim Health Prod. 2017 Dec;49(8):1771-1777. doi: 10.1007/s11250-017-1392-7. Epub 2017 Sep 16.


Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size.

Oldeschulte DL, Halley YA, Wilson ML, Bhattarai EK, Brashear W, Hill J, Metz RP, Johnson CD, Rollins D, Peterson MJ, Bickhart DM, Decker JE, Sewell JF, Seabury CM.

G3 (Bethesda). 2017 Sep 7;7(9):3047-3058. doi: 10.1534/g3.117.043083.


Genome-wide association study for feed efficiency and growth traits in U.S. beef cattle.

Seabury CM, Oldeschulte DL, Saatchi M, Beever JE, Decker JE, Halley YA, Bhattarai EK, Molaei M, Freetly HC, Hansen SL, Yampara-Iquise H, Johnson KA, Kerley MS, Kim J, Loy DD, Marques E, Neibergs HL, Schnabel RD, Shike DW, Spangler ML, Weaber RL, Garrick DJ, Taylor JF.

BMC Genomics. 2017 May 18;18(1):386. doi: 10.1186/s12864-017-3754-y.


Corrigendum: Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Tizioto PC, Coutinho LL, Oliveira PS, Cesar AS, Diniz WJ, Lima AO, Rocha MI, Decker JE, Schnabel RD, Mourão GB, Tullio RR, Zerlotini A, Taylor JF, Regitano LC.

Sci Rep. 2017 Apr 5;7:44345. doi: 10.1038/srep44345. No abstract available.


Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis.

Whitacre LK, Hoff JL, Schnabel RD, Albarella S, Ciotola F, Peretti V, Strozzi F, Ferrandi C, Ramunno L, Sonstegard TS, Williams JL, Taylor JF, Decker JE.

Sci Rep. 2017 Jan 3;7:39719. doi: 10.1038/srep39719.


Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Tizioto PC, Coutinho LL, Oliveira PS, Cesar AS, Diniz WJ, Lima AO, Rocha MI, Decker JE, Schnabel RD, Mourão GB, Tullio RR, Zerlotini A, Taylor JF, Regitano LC.

Sci Rep. 2016 Dec 22;6:39493. doi: 10.1038/srep39493.


Insight into the genetic composition of South African Sanga cattle using SNP data from cattle breeds worldwide.

Makina SO, Whitacre LK, Decker JE, Taylor JF, MacNeil MD, Scholtz MM, van Marle-Köster E, Muchadeyi FC, Makgahlela ML, Maiwashe A.

Genet Sel Evol. 2016 Nov 15;48(1):88.


Early cave art and ancient DNA record the origin of European bison.

Soubrier J, Gower G, Chen K, Richards SM, Llamas B, Mitchell KJ, Ho SY, Kosintsev P, Lee MS, Baryshnikov G, Bollongino R, Bover P, Burger J, Chivall D, Crégut-Bonnoure E, Decker JE, Doronichev VB, Douka K, Fordham DA, Fontana F, Fritz C, Glimmerveen J, Golovanova LV, Groves C, Guerreschi A, Haak W, Higham T, Hofman-Kamińska E, Immel A, Julien MA, Krause J, Krotova O, Langbein F, Larson G, Rohrlach A, Scheu A, Schnabel RD, Taylor JF, Tokarska M, Tosello G, van der Plicht J, van Loenen A, Vigne JD, Wooley O, Orlando L, Kowalczyk R, Shapiro B, Cooper A.

Nat Commun. 2016 Oct 18;7:13158. doi: 10.1038/ncomms13158.


Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals.

Taylor JF, Whitacre LK, Hoff JL, Tizioto PC, Kim J, Decker JE, Schnabel RD.

Genet Sel Evol. 2016 Aug 17;48(1):59. doi: 10.1186/s12711-016-0237-6.


Holsteins are the genomic selection poster cows.

Taylor JF, Taylor KH, Decker JE.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7690-2. doi: 10.1073/pnas.1608144113. Epub 2016 Jun 29. No abstract available.


Origins of cattle on Chirikof Island, Alaska, elucidated from genome-wide SNP genotypes.

Decker JE, Taylor JF, Kantanen J, Millbrooke A, Schnabel RD, Alexander LJ, MacNeil MD.

Heredity (Edinb). 2016 Jun;116(6):502-5. doi: 10.1038/hdy.2016.7. Epub 2016 Feb 10.


What's in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual.

Whitacre LK, Tizioto PC, Kim J, Sonstegard TS, Schroeder SG, Alexander LJ, Medrano JF, Schnabel RD, Taylor JF, Decker JE.

BMC Genomics. 2015 Dec 29;16:1114. doi: 10.1186/s12864-015-2313-7.


Agricultural Genomics: Commercial Applications Bring Increased Basic Research Power.

Decker JE.

PLoS Genet. 2015 Nov 5;11(11):e1005621. doi: 10.1371/journal.pgen.1005621. eCollection 2015 Nov. No abstract available.


Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes.

Tizioto PC, Coutinho LL, Decker JE, Schnabel RD, Rosa KO, Oliveira PS, Souza MM, Mourão GB, Tullio RR, Chaves AS, Lanna DP, Zerlotini-Neto A, Mudadu MA, Taylor JF, Regitano LC.

BMC Genomics. 2015 Mar 25;16:242. doi: 10.1186/s12864-015-1464-x.


Comparison of Bayesian models to estimate direct genomic values in multi-breed commercial beef cattle.

Rolf MM, Garrick DJ, Fountain T, Ramey HR, Weaber RL, Decker JE, Pollak EJ, Schnabel RD, Taylor JF.

Genet Sel Evol. 2015 Apr 1;47:23. doi: 10.1186/s12711-015-0106-8.


Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle.

Tizioto PC, Taylor JF, Decker JE, Gromboni CF, Mudadu MA, Schnabel RD, Coutinho LL, Mourão GB, Oliveira PS, Souza MM, Reecy JM, Nassu RT, Bressani FA, Tholon P, Sonstegard TS, Alencar MM, Tullio RR, Nogueira AR, Regitano LC.

Genet Sel Evol. 2015 Mar 11;47:15. doi: 10.1186/s12711-014-0083-3.


QTLs associated with dry matter intake, metabolic mid-test weight, growth and feed efficiency have little overlap across 4 beef cattle studies.

Saatchi M, Beever JE, Decker JE, Faulkner DB, Freetly HC, Hansen SL, Yampara-Iquise H, Johnson KA, Kachman SD, Kerley MS, Kim J, Loy DD, Marques E, Neibergs HL, Pollak EJ, Schnabel RD, Seabury CM, Shike DW, Snelling WM, Spangler ML, Weaber RL, Garrick DJ, Taylor JF.

BMC Genomics. 2014 Nov 20;15:1004. doi: 10.1186/1471-2164-15-1004.


Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.

Decker JE, McKay SD, Rolf MM, Kim J, Molina Alcalá A, Sonstegard TS, Hanotte O, Götherström A, Seabury CM, Praharani L, Babar ME, Correia de Almeida Regitano L, Yildiz MA, Heaton MP, Liu WS, Lei CZ, Reecy JM, Saif-Ur-Rehman M, Schnabel RD, Taylor JF.

PLoS Genet. 2014 Mar 27;10(3):e1004254. doi: 10.1371/journal.pgen.1004254. eCollection 2014 Mar.


A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene.

Halley YA, Dowd SE, Decker JE, Seabury PM, Bhattarai E, Johnson CD, Rollins D, Tizard IR, Brightsmith DJ, Peterson MJ, Taylor JF, Seabury CM.

PLoS One. 2014 Mar 12;9(3):e90240. doi: 10.1371/journal.pone.0090240. eCollection 2014.


Management strategies for adding value to replacement beef heifers: a working model.

Patterson DJ, Brown DS, Sexten WJ, Decker JE, Poock SE.

Vet Clin North Am Food Anim Pract. 2013 Nov;29(3):653-66. doi: 10.1016/j.cvfa.2013.07.005. Epub 2013 Aug 21.


Genome scan for meat quality traits in Nelore beef cattle.

Tizioto PC, Decker JE, Taylor JF, Schnabel RD, Mudadu MA, Silva FL, Mourão GB, Coutinho LL, Tholon P, Sonstegard TS, Rosa AN, Alencar MM, Tullio RR, Medeiros SR, Nassu RT, Feijó GL, Silva LO, Torres RA, Siqueira F, Higa RH, Regitano LC.

Physiol Genomics. 2013 Nov 1;45(21):1012-20. doi: 10.1152/physiolgenomics.00066.2013. Epub 2013 Sep 10.


Detection of selective sweeps in cattle using genome-wide SNP data.

Ramey HR, Decker JE, McKay SD, Rolf MM, Schnabel RD, Taylor JF.

BMC Genomics. 2013 Jun 7;14:382. doi: 10.1186/1471-2164-14-382.


Defective telomere elongation and hematopoiesis from telomerase-mutant aplastic anemia iPSCs.

Winkler T, Hong SG, Decker JE, Morgan MJ, Wu C, Hughes WM 5th, Yang Y, Wangsa D, Padilla-Nash HM, Ried T, Young NS, Dunbar CE, Calado RT.

J Clin Invest. 2013 May;123(5):1952-63. doi: 10.1172/JCI67146. Epub 2013 Apr 15.


New World cattle show ancestry from multiple independent domestication events.

McTavish EJ, Decker JE, Schnabel RD, Taylor JF, Hillis DM.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):E1398-406. doi: 10.1073/pnas.1303367110. Epub 2013 Mar 25.


GM2 gangliosidosis associated with a HEXA missense mutation in Japanese Chin dogs: a potential model for Tay Sachs disease.

Sanders DN, Zeng R, Wenger DA, Johnson GS, Johnson GC, Decker JE, Katz ML, Platt SR, O'Brien DP.

Mol Genet Metab. 2013 Jan;108(1):70-5. doi: 10.1016/j.ymgme.2012.11.008. Epub 2012 Nov 27.


A novel analytical method, Birth Date Selection Mapping, detects response of the Angus (Bos taurus) genome to selection on complex traits.

Decker JE, Vasco DA, McKay SD, McClure MC, Rolf MM, Kim J, Northcutt SL, Bauck S, Woodward BW, Schnabel RD, Taylor JF.

BMC Genomics. 2012 Nov 9;13:606. doi: 10.1186/1471-2164-13-606.


Genome-wide association analysis for quantitative trait loci influencing Warner-Bratzler shear force in five taurine cattle breeds.

McClure MC, Ramey HR, Rolf MM, McKay SD, Decker JE, Chapple RH, Kim JW, Taxis TM, Weaber RL, Schnabel RD, Taylor JF.

Anim Genet. 2012 Dec;43(6):662-73. doi: 10.1111/j.1365-2052.2012.02323.x. Epub 2012 Feb 27.


Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation.

Saatchi M, McClure MC, McKay SD, Rolf MM, Kim J, Decker JE, Taxis TM, Chapple RH, Ramey HR, Northcutt SL, Bauck S, Woodward B, Dekkers JC, Fernando RL, Schnabel RD, Garrick DJ, Taylor JF.

Genet Sel Evol. 2011 Nov 28;43:40. doi: 10.1186/1297-9686-43-40.


A truncated retrotransposon disrupts the GRM1 coding sequence in Coton de Tulear dogs with Bandera's neonatal ataxia.

Zeng R, Farias FH, Johnson GS, McKay SD, Schnabel RD, Decker JE, Taylor JF, Mann CS, Katz ML, Johnson GC, Coates JR, O'Brien DP.

J Vet Intern Med. 2011 Mar-Apr;25(2):267-72. doi: 10.1111/j.1939-1676.2010.0666.x. Epub 2011 Jan 31.


Genomic tools for characterizing monogenic and polygenic traits in ruminants--using the bovine as an example.

Taylor JF, Chapple RH, Decker JE, Gregg SJ, Kim JW, McKay SD, Ramey HR, Rolf MM, Taxis TM, Schnabel RD.

Soc Reprod Fertil Suppl. 2010;67:13-28.


Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle.

Seabury CM, Seabury PM, Decker JE, Schnabel RD, Taylor JF, Womack JE.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):151-6. doi: 10.1073/pnas.0913006107. Epub 2009 Dec 14.


Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics.

Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP, Chen K, Cooper A, Vilkki J, Seabury CM, Caetano AR, Johnson GS, Brenneman RA, Hanotte O, Eggert LS, Wiener P, Kim JJ, Kim KS, Sonstegard TS, Van Tassell CP, Neibergs HL, McEwan JC, Brauning R, Coutinho LL, Babar ME, Wilson GA, McClure MC, Rolf MM, Kim J, Schnabel RD, Taylor JF.

Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18644-9. doi: 10.1073/pnas.0904691106. Epub 2009 Oct 21.


Increasing the range of unambiguity in step-height measurement with multiple-wavelength interferometry--application to absolute long gauge block measurement.

Decker JE, Miles JR, Madej AA, Siemsen RF, Siemsen KJ, de Bonth S, Bustraan K, Temple S, Pekelsky JR.

Appl Opt. 2003 Oct 1;42(28):5670-8.


Development of improved electrical-substitution radiometers at the National Research Council of Canada.

Gibb K, Decker JE, Boivin LP, Das SR, Buchanan MA.

Appl Opt. 1996 Jul 1;35(19):3607-13. doi: 10.1364/AO.35.003607.


Distal tibia bone graft for arthrodesis of the foot and ankle.

Danziger MB, Abdo RV, Decker JE.

Foot Ankle Int. 1995 Apr;16(4):187-90.


Spot-size measurement of an intense CO(2) laser beam.

Decker JE, Xiong W, Yergeau F, Chin SL.

Appl Opt. 1992 Apr 20;31(12):1912-3. doi: 10.1364/AO.31.001912.


Stable operation of a powerful 3-Hz line tunable TEA CO(2) oscillator-amplifiers system.

Decker JE, Lagace S, Berube J, Beaudoin Y, Chin SL.

Appl Opt. 1991 May 20;30(15):1888-90. doi: 10.1364/AO.30.001888.


A surgical approach to the motor branch of the ulnar nerve.

Ollstein RN, Siegel HW, Decker JE.

Plast Reconstr Surg. 1989 Sep;84(3):526-8.


The effects of thionapthene-2-carboxylic acid-lysine on the hypercalcemia of malignancy in the rat.

Decker JE, Morrison NE, Lorenzo JA, Samour CM, McCarron BA, Raisz LG.

Calcif Tissue Int. 1989 Jan;44(1):61-4.


The impact of Florida's matrix-model organization on implementation of the Older Americans Act.

Decker JE, Whelan RK.

J Health Hum Resour Adm. 1984 Summer;7(1):84-116. No abstract available.


Identification of Leishmania spp. by radiorespirometry.

Decker JE, Schrot JR, Levin GV.

J Protozool. 1977 Aug;24(3):463-70.


Leishmania donovani and L. mexicana: production of the excretion factor.

Decker JE, Janovy J Jr.

Comp Biochem Physiol B. 1974 Nov 15;49(3):513-23. No abstract available.


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