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Template-Independent Enzymatic Oligonucleotide Synthesis (TiEOS): Its History, Prospects, and Challenges.

Jensen MA, Davis RW.

Biochemistry. 2018 Mar 13. doi: 10.1021/acs.biochem.7b00937. [Epub ahead of print]


Catalytic activities of mammalian epoxide hydrolases with cis and trans fatty acid epoxides relevant to skin barrier function.

Yamanashi H, Boeglin WE, Morisseau C, Davis RW, Sulikowski GA, Hammock BD, Brash AR.

J Lipid Res. 2018 Feb 19. pii: jlr.M082701. doi: 10.1194/jlr.M082701. [Epub ahead of print]


Condition dependence of shared traits differs between sympatric Anolis lizards.

Curlis JD, Davis RW, Zetkulic E, Cox CL.

J Exp Zool A Ecol Integr Physiol. 2017 Feb;327(2-3):110-118. doi: 10.1002/jez.2076. Epub 2017 May 29.


Engineering Escherichia coli for the production of terpene mixture enriched in caryophyllene and caryophyllene alcohol as potential aviation fuel compounds.

Wu W, Liu F, Davis RW.

Metab Eng Commun. 2018 Jan 5;6:13-21. doi: 10.1016/j.meteno.2018.01.001. eCollection 2018 Jun.


Streamlined circular proximity ligation assay provides high stringency and compatibility with low-affinity antibodies.

Jalili R, Horecka J, Swartz JR, Davis RW, Persson HHJ.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):E925-E933. doi: 10.1073/pnas.1718283115. Epub 2018 Jan 16.


A molecular basis for water motion detection by the mechanosensory lateral line of zebrafish.

Chou SW, Chen Z, Zhu S, Davis RW, Hu J, Liu L, Fernando CA, Kindig K, Brown WC, Stepanyan R, McDermott BM Jr.

Nat Commun. 2017 Dec 21;8(1):2234. doi: 10.1038/s41467-017-01604-2.


The Effect of Whole-Body Vibration on Lower-Body Resistance Detraining in College-Age Women.

Lindsay KG, Nichols DL, Davis RW, Marshall DD.

Res Q Exerc Sport. 2018 Mar;89(1):57-65. doi: 10.1080/02701367.2017.1401210. Epub 2017 Dec 8.


Impact of Flue Gas Compounds on Microalgae and Mechanisms for Carbon Assimilation and Utilization.

Vuppaladadiyam AK, Yao JG, Florin N, George A, Wang X, Labeeuw L, Jiang Y, Davis RW, Abbas A, Ralph P, Fennell PS, Zhao M.

ChemSusChem. 2018 Jan 23;11(2):334-355. doi: 10.1002/cssc.201701611. Epub 2018 Jan 15. Review.


Bioconversion of distillers' grains hydrolysates to advanced biofuels by an Escherichia coli co-culture.

Liu F, Wu W, Tran-Gyamfi MB, Jaryenneh JD, Zhuang X, Davis RW.

Microb Cell Fact. 2017 Nov 9;16(1):192. doi: 10.1186/s12934-017-0804-8.


Durophagous biting in sea otters (Enhydra lutris) differs kinematically from raptorial biting of other marine mammals.

Timm-Davis LL, Davis RW, Marshall CD.

J Exp Biol. 2017 Dec 15;220(Pt 24):4703-4710. doi: 10.1242/jeb.162966. Epub 2017 Oct 26.


Quantitative analysis of protein interaction network dynamics in yeast.

Celaj A, Schlecht U, Smith JD, Xu W, Suresh S, Miranda M, Aparicio AM, Proctor M, Davis RW, Roth FP, St Onge RP.

Mol Syst Biol. 2017 Jul 13;13(7):934. doi: 10.15252/msb.20177532.


Autonomous sweat extraction and analysis applied to cystic fibrosis and glucose monitoring using a fully integrated wearable platform.

Emaminejad S, Gao W, Wu E, Davies ZA, Yin Yin Nyein H, Challa S, Ryan SP, Fahad HM, Chen K, Shahpar Z, Talebi S, Milla C, Javey A, Davis RW.

Proc Natl Acad Sci U S A. 2017 May 2;114(18):4625-4630. doi: 10.1073/pnas.1701740114. Epub 2017 Apr 17.


Heterologous expression of diverse propionyl-CoA carboxylases affects polyketide production in Escherichia coli.

Vandova GA, O'Brien RV, Lowry B, Robbins TF, Fischer CR, Davis RW, Khosla C, Harvey CJ, Hillenmeyer ME.

J Antibiot (Tokyo). 2017 Jul;70(7):859-863. doi: 10.1038/ja.2017.38. Epub 2017 Apr 12. No abstract available.


Effect of fatty acid interaction on myoglobin oxygen affinity and triglyceride metabolism.

Jue T, Simond G, Wright TJ, Shih L, Chung Y, Sriram R, Kreutzer U, Davis RW.

J Physiol Biochem. 2016 Aug;73(3):359-370. doi: 10.1007/s13105-017-0559-z. Epub 2017 Mar 29. Erratum in: J Physiol Biochem. 2017 Oct 5;:.


A method for high-throughput production of sequence-verified DNA libraries and strain collections.

Smith JD, Schlecht U, Xu W, Suresh S, Horecka J, Proctor MJ, Aiyar RS, Bennett RA, Chu A, Li YF, Roy K, Davis RW, Steinmetz LM, Hyman RW, Levy SF, St Onge RP.

Mol Syst Biol. 2017 Feb 13;13(2):913. doi: 10.15252/msb.20167233.


Multifunctional, inexpensive, and reusable nanoparticle-printed biochip for cell manipulation and diagnosis.

Esfandyarpour R, DiDonato MJ, Yang Y, Durmus NG, Harris JS, Davis RW.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1306-E1315. doi: 10.1073/pnas.1621318114. Epub 2017 Feb 6.


Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels.

Wu W, Davis RW, Tran-Gyamfi MB, Kuo A, LaButti K, Mihaltcheva S, Hundley H, Chovatia M, Lindquist E, Barry K, Grigoriev IV, Henrissat B, Gladden JM.

Appl Microbiol Biotechnol. 2017 Mar;101(6):2603-2618. doi: 10.1007/s00253-017-8091-1. Epub 2017 Jan 12.


Systematic Mapping of Chemical-Genetic Interactions in Saccharomyces cerevisiae.

Suresh S, Schlecht U, Xu W, Bray W, Miranda M, Davis RW, Nislow C, Giaever G, Lokey RS, St Onge RP.

Cold Spring Harb Protoc. 2016 Sep 1;2016(9):pdb.top077701. doi: 10.1101/pdb.top077701.


Identification of Chemical-Genetic Interactions via Parallel Analysis of Barcoded Yeast Strains.

Suresh S, Schlecht U, Xu W, Miranda M, Davis RW, Nislow C, Giaever G, St Onge RP.

Cold Spring Harb Protoc. 2016 Sep 1;2016(9):pdb.prot088054. doi: 10.1101/pdb.prot088054.


A Wearable Electrochemical Platform for Noninvasive Simultaneous Monitoring of Ca(2+) and pH.

Nyein HY, Gao W, Shahpar Z, Emaminejad S, Challa S, Chen K, Fahad HM, Tai LC, Ota H, Davis RW, Javey A.

ACS Nano. 2016 Jul 26;10(7):7216-24. doi: 10.1021/acsnano.6b04005. Epub 2016 Jul 8.


Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae.

Xie B, Horecka J, Chu A, Davis RW, Becker E, Primig M.

RNA Biol. 2016 Sep;13(9):772-82. doi: 10.1080/15476286.2016.1191738. Epub 2016 Jun 30.


An electrochemical platform for localized pH control on demand.

Fomina N, Johnson CA, Maruniak A, Bahrampour S, Lang C, Davis RW, Kavusi S, Ahmad H.

Lab Chip. 2016 Jun 21;16(12):2236-44. doi: 10.1039/c6lc00421k. Epub 2016 May 20.


Nucleotide-Specific Contrast for DNA Sequencing by Electron Spectroscopy.

Mankos M, Persson HH, N'Diaye AT, Shadman K, Schmid AK, Davis RW.

PLoS One. 2016 May 5;11(5):e0154707. doi: 10.1371/journal.pone.0154707. eCollection 2016.


Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design.

Smith JD, Suresh S, Schlecht U, Wu M, Wagih O, Peltz G, Davis RW, Steinmetz LM, Parts L, St Onge RP.

Genome Biol. 2016 Mar 8;17:45. doi: 10.1186/s13059-016-0900-9.


Complete genome of Staphylococcus aureus Tager 104 provides evidence of its relation to modern systemic hospital-acquired strains.

Davis RW 4th, Brannen AD, Hossain MJ, Monsma S, Bock PE, Nahrendorf M, Mead D, Lodes M, Liles MR, Panizzi P.

BMC Genomics. 2016 Mar 3;17:179. doi: 10.1186/s12864-016-2433-8.


Next-Generation Molecular Testing of Newborn Dried Blood Spots for Cystic Fibrosis.

Lefterova MI, Shen P, Odegaard JI, Fung E, Chiang T, Peng G, Davis RW, Wang W, Kharrazi M, Schrijver I, Scharfe C.

J Mol Diagn. 2016 Mar;18(2):267-82. doi: 10.1016/j.jmoldx.2015.11.005. Epub 2016 Feb 1.


Fully integrated wearable sensor arrays for multiplexed in situ perspiration analysis.

Gao W, Emaminejad S, Nyein HYY, Challa S, Chen K, Peck A, Fahad HM, Ota H, Shiraki H, Kiriya D, Lien DH, Brooks GA, Davis RW, Javey A.

Nature. 2016 Jan 28;529(7587):509-514. doi: 10.1038/nature16521.


Nanoelectronic three-dimensional (3D) nanotip sensing array for real-time, sensitive, label-free sequence specific detection of nucleic acids.

Esfandyarpour R, Yang L, Koochak Z, Harris JS, Davis RW.

Biomed Microdevices. 2016 Feb;18(1):7. doi: 10.1007/s10544-016-0032-8.


Integrating Cell Phone Imaging with Magnetic Levitation (i-LEV) for Label-Free Blood Analysis at the Point-of-Living.

Baday M, Calamak S, Durmus NG, Davis RW, Steinmetz LM, Demirci U.

Small. 2016 Mar 2;12(9):1222-1229. doi: 10.1002/smll.201501845. Epub 2015 Nov 2.


Growth of mono- and mixed cultures of Nannochloropsis salina and Phaeodactylum tricornutum on struvite as a nutrient source.

Davis RW, Siccardi AJ 3rd, Huysman ND, Wyatt NB, Hewson JC, Lane TW.

Bioresour Technol. 2015 Dec;198:577-85. doi: 10.1016/j.biortech.2015.09.070. Epub 2015 Sep 26.


Robust Optimization of Biological Protocols.

Flaherty P, Davis RW.

Technometrics. 2015;57(2):234-244. Epub 2015 Jul 13.


The Healthy Heart: Lessons from Nature's Elite Athletes.

Williams TM, Bengtson P, Steller DL, Croll DA, Davis RW.

Physiology (Bethesda). 2015 Sep;30(5):349-57. doi: 10.1152/physiol.00017.2015. Review.


A Rapid, High-Quality, Cost-Effective, Comprehensive and Expandable Targeted Next-Generation Sequencing Assay for Inherited Heart Diseases.

Wilson KD, Shen P, Fung E, Karakikes I, Zhang A, InanlooRahatloo K, Odegaard J, Sallam K, Davis RW, Lui GK, Ashley EA, Scharfe C, Wu JC.

Circ Res. 2015 Sep 11;117(7):603-11. doi: 10.1161/CIRCRESAHA.115.306723. Epub 2015 Aug 11.


Multitarget, quantitative nanoplasmonic electrical field-enhanced resonating device (NE2RD) for diagnostics.

Inci F, Filippini C, Baday M, Ozen MO, Calamak S, Durmus NG, Wang S, Hanhauser E, Hobbs KS, Juillard F, Kuang PP, Vetter ML, Carocci M, Yamamoto HS, Takagi Y, Yildiz UH, Akin D, Wesemann DR, Singhal A, Yang PL, Nibert ML, Fichorova RN, Lau DT, Henrich TJ, Kaye KM, Schachter SC, Kuritzkes DR, Steinmetz LM, Gambhir SS, Davis RW, Demirci U.

Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):E4354-63. doi: 10.1073/pnas.1510824112. Epub 2015 Jul 20.


RASA: Robust Alternative Splicing Analysis for Human Transcriptome Arrays.

Seok J, Xu W, Davis RW, Xiao W.

Sci Rep. 2015 Jul 6;5:11917. doi: 10.1038/srep11917.


Magnetic levitation of single cells.

Durmus NG, Tekin HC, Guven S, Sridhar K, Arslan Yildiz A, Calibasi G, Ghiran I, Davis RW, Steinmetz LM, Demirci U.

Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):E3661-8. doi: 10.1073/pnas.1509250112. Epub 2015 Jun 29.


Myoglobin oxygen affinity in aquatic and terrestrial birds and mammals.

Wright TJ, Davis RW.

J Exp Biol. 2015 Jul;218(Pt 14):2180-9. doi: 10.1242/jeb.119321. Epub 2015 May 18.


Locomotion and the Cost of Hunting in Large, Stealthy Marine Carnivores.

Williams TM, Fuiman LA, Davis RW.

Integr Comp Biol. 2015 Oct;55(4):673-82. doi: 10.1093/icb/icv025. Epub 2015 May 3. Review.


A hybrid approach of gene sets and single genes for the prediction of survival risks with gene expression data.

Seok J, Davis RW, Xiao W.

PLoS One. 2015 May 1;10(5):e0122103. doi: 10.1371/journal.pone.0122103. eCollection 2015.


In Vivo Tracking of Streptococcal Infections of Subcutaneous Origin in a Murine Model.

Davis RW 4th, Eggleston H, Johnson F, Nahrendorf M, Bock PE, Peterson T, Panizzi P.

Mol Imaging Biol. 2015 Dec;17(6):793-801. doi: 10.1007/s11307-015-0856-2.


A simple method for encapsulating single cells in alginate microspheres allows for direct PCR and whole genome amplification.

Bigdeli S, Dettloff RO, Frank CW, Davis RW, Crosby LD.

PLoS One. 2015 Feb 17;10(2):e0117738. doi: 10.1371/journal.pone.0117738. eCollection 2015.


Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development.

Becker E, Liu Y, Lardenois A, Walther T, Horecka J, Stuparevic I, Law MJ, Lavigne R, Evrard B, Demougin P, Riffle M, Strich R, Davis RW, Pineau C, Primig M.

J Proteomics. 2015 Apr 24;119:30-44. doi: 10.1016/j.jprot.2015.01.015. Epub 2015 Feb 4.


Tunable control of antibody immobilization using electric field.

Emaminejad S, Javanmard M, Gupta C, Chang S, Davis RW, Howe RT.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):1995-9. doi: 10.1073/pnas.1424592112. Epub 2015 Feb 3.


The role of photo-osmotic adaptation in semi-continuous culture and lipid particle release from Dunaliella viridis.

Davis RW, Carvalho BJ, Jones HD, Singh S.

J Appl Phycol. 2015;27:109-123. Epub 2014 May 13.


Exercise at depth alters bradycardia and incidence of cardiac anomalies in deep-diving marine mammals.

Williams TM, Fuiman LA, Kendall T, Berry P, Richter B, Noren SR, Thometz N, Shattock MJ, Farrell E, Stamper AM, Davis RW.

Nat Commun. 2015 Jan 16;6:6055. doi: 10.1038/ncomms7055.


Mice are not men.

Warren HS, Tompkins RG, Moldawer LL, Seok J, Xu W, Mindrinos MN, Maier RV, Xiao W, Davis RW.

Proc Natl Acad Sci U S A. 2015 Jan 27;112(4):E345. doi: 10.1073/pnas.1414857111. Epub 2014 Dec 24. No abstract available.


The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.

Lardenois A, Stuparevic I, Liu Y, Law MJ, Becker E, Smagulova F, Waern K, Guilleux MH, Horecka J, Chu A, Kervarrec C, Strich R, Snyder M, Davis RW, Steinmetz LM, Primig M.

Nucleic Acids Res. 2015 Jan;43(1):115-28. doi: 10.1093/nar/gku1185. Epub 2014 Dec 3.


Myoglobin extraction from mammalian skeletal muscle and oxygen affinity determination under physiological conditions.

Wright TJ, Davis RW.

Protein Expr Purif. 2015 Mar;107:50-5. doi: 10.1016/j.pep.2014.11.004. Epub 2014 Nov 21.


Are vibrissae viable sensory structures for prey capture in northern elephant seals, Mirounga angustirostris?

Mcgovern KA, Marshall CD, Davis RW.

Anat Rec (Hoboken). 2015 Apr;298(4):750-60. doi: 10.1002/ar.23061. Epub 2014 Oct 31.


Single cell mutational analysis of PIK3CA in circulating tumor cells and metastases in breast cancer reveals heterogeneity, discordance, and mutation persistence in cultured disseminated tumor cells from bone marrow.

Deng G, Krishnakumar S, Powell AA, Zhang H, Mindrinos MN, Telli ML, Davis RW, Jeffrey SS.

BMC Cancer. 2014 Jun 19;14:456. doi: 10.1186/1471-2407-14-456.

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