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Items: 1 to 50 of 57

1.

Significant loss of mitochondrial diversity within the last century due to extinction of peripheral populations in eastern gorillas.

van der Valk T, Sandoval-Castellanos E, Caillaud D, Ngobobo U, Binyinyi E, Nishuli R, Stoinski T, Gilissen E, Sonet G, Semal P, Kalthoff DC, Dalén L, Guschanski K.

Sci Rep. 2018 Apr 25;8(1):6551. doi: 10.1038/s41598-018-24497-7.

2.

Full Mitogenomes in the Critically Endangered Kākāpō Reveal Major Post-Glacial and Anthropogenic Effects on Neutral Genetic Diversity.

Dussex N, von Seth J, Robertson BC, Dalén L.

Genes (Basel). 2018 Apr 19;9(4). pii: E220. doi: 10.3390/genes9040220.

3.

Extended and Continuous Decline in Effective Population Size Results in Low Genomic Diversity in the World's Rarest Hyena Species, the Brown Hyena.

Westbury MV, Hartmann S, Barlow A, Wiesel I, Leo V, Welch R, Parker DM, Sicks F, Ludwig A, Dalén L, Hofreiter M.

Mol Biol Evol. 2018 May 1;35(5):1225-1237. doi: 10.1093/molbev/msy037.

4.

A comprehensive genomic history of extinct and living elephants.

Palkopoulou E, Lipson M, Mallick S, Nielsen S, Rohland N, Baleka S, Karpinski E, Ivancevic AM, To TH, Kortschak RD, Raison JM, Qu Z, Chin TJ, Alt KW, Claesson S, Dalén L, MacPhee RDE, Meller H, Roca AL, Ryder OA, Heiman D, Young S, Breen M, Williams C, Aken BL, Ruffier M, Karlsson E, Johnson J, Di Palma F, Alfoldi J, Adelson DL, Mailund T, Munch K, Lindblad-Toh K, Hofreiter M, Poinar H, Reich D.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):E2566-E2574. doi: 10.1073/pnas.1720554115. Epub 2018 Feb 26.

PMID:
29483247
5.

Quantifying Temporal Genomic Erosion in Endangered Species.

Díez-Del-Molino D, Sánchez-Barreiro F, Barnes I, Gilbert MTP, Dalén L.

Trends Ecol Evol. 2018 Mar;33(3):176-185. doi: 10.1016/j.tree.2017.12.002. Epub 2017 Dec 27. Review.

PMID:
29289355
6.

Genome-Based Sexing Provides Clues about Behavior and Social Structure in the Woolly Mammoth.

Pečnerová P, Díez-Del-Molino D, Dussex N, Feuerborn T, von Seth J, van der Plicht J, Nikolskiy P, Tikhonov A, Vartanyan S, Dalén L.

Curr Biol. 2017 Nov 20;27(22):3505-3510.e3. doi: 10.1016/j.cub.2017.09.064. Epub 2017 Nov 2.

PMID:
29103934
7.

Demographic inference from whole-genome and RAD sequencing data suggests alternating human impacts on goose populations since the last ice age.

Pujolar JM, Dalén L, Hansen MM, Madsen J.

Mol Ecol. 2017 Nov;26(22):6270-6283. doi: 10.1111/mec.14374. Epub 2017 Nov 3.

PMID:
28980346
8.
9.

First de novo whole genome sequencing and assembly of the pink-footed goose.

Pujolar JM, Dalén L, Olsen RA, Hansen MM, Madsen J.

Genomics. 2018 Mar;110(2):75-79. doi: 10.1016/j.ygeno.2017.08.008. Epub 2017 Aug 30.

PMID:
28860085
10.

Whole mitochondrial genome capture from faecal samples and museum-preserved specimens.

van der Valk T, Lona Durazo F, Dalén L, Guschanski K.

Mol Ecol Resour. 2017 Nov;17(6):e111-e121. doi: 10.1111/1755-0998.12699. Epub 2017 Aug 3.

PMID:
28675688
11.

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics.

Gopalakrishnan S, Samaniego Castruita JA, Sinding MS, Kuderna LFK, Räikkönen J, Petersen B, Sicheritz-Ponten T, Larson G, Orlando L, Marques-Bonet T, Hansen AJ, Dalén L, Gilbert MTP.

BMC Genomics. 2017 Jun 29;18(1):495. doi: 10.1186/s12864-017-3883-3.

12.

Identifying Bird Remains Using Ancient DNA Barcoding.

Dalén L, Lagerholm VK, Nylander JAA, Barton N, Bochenski ZM, Tomek T, Rudling D, Ericson PGP, Irestedt M, Stewart JR.

Genes (Basel). 2017 Jun 21;8(6). pii: E169. doi: 10.3390/genes8060169.

13.

The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis.

Chang D, Knapp M, Enk J, Lippold S, Kircher M, Lister A, MacPhee RD, Widga C, Czechowski P, Sommer R, Hodges E, Stümpel N, Barnes I, Dalén L, Derevianko A, Germonpré M, Hillebrand-Voiculescu A, Constantin S, Kuznetsova T, Mol D, Rathgeber T, Rosendahl W, Tikhonov AN, Willerslev E, Hannon G, Lalueza-Fox C, Joger U, Poinar H, Hofreiter M, Shapiro B.

Sci Rep. 2017 Mar 22;7:44585. doi: 10.1038/srep44585.

14.

Spatial subsidies in spider diets vary with shoreline structure: Complementary evidence from molecular diet analysis and stable isotopes.

Hambäck PA, Weingartner E, Dalén L, Wirta H, Roslin T.

Ecol Evol. 2016 Oct 26;6(23):8431-8439. doi: 10.1002/ece3.2536. eCollection 2016 Dec.

15.

Range shifts or extinction? Ancient DNA and distribution modelling reveal past and future responses to climate warming in cold-adapted birds.

Lagerholm VK, Sandoval-Castellanos E, Vaniscotte A, Potapova OR, Tomek T, Bochenski ZM, Shepherd P, Barton N, Van Dyck MC, Miller R, Höglund J, Yoccoz NG, Dalén L, Stewart JR.

Glob Chang Biol. 2017 Apr;23(4):1425-1435. doi: 10.1111/gcb.13522. Epub 2016 Oct 20.

PMID:
27762483
16.

Evolutionary History of the Nesophontidae, the Last Unplaced Recent Mammal Family.

Brace S, Thomas JA, Dalén L, Burger J, MacPhee RD, Barnes I, Turvey ST.

Mol Biol Evol. 2016 Dec;33(12):3095-3103. Epub 2016 Sep 13.

PMID:
27624716
17.

Changes in variation at the MHC class II DQA locus during the final demise of the woolly mammoth.

Pečnerová P, Díez-Del-Molino D, Vartanyan S, Dalén L.

Sci Rep. 2016 May 4;6:25274. doi: 10.1038/srep25274.

18.

Inbreeding depression in a critically endangered carnivore.

Norén K, Godoy E, Dalén L, Meijer T, Angerbjörn A.

Mol Ecol. 2016 Jul;25(14):3309-18. doi: 10.1111/mec.13674.

PMID:
27135988
19.

Metagenomic Analysis from the Interior of a Speleothem in Tjuv-Ante's Cave, Northern Sweden.

Zepeda Mendoza ML, Lundberg J, Ivarsson M, Campos P, Nylander JA, Sallstedt T, Dalen L.

PLoS One. 2016 Mar 17;11(3):e0151577. doi: 10.1371/journal.pone.0151577. eCollection 2016.

20.

Synchronous genetic turnovers across Western Eurasia in Late Pleistocene collared lemmings.

Palkopoulou E, Baca M, Abramson NI, Sablin M, Socha P, Nadachowski A, Prost S, Germonpré M, Kosintsev P, Smirnov NG, Vartanyan S, Ponomarev D, Nyström J, Nikolskiy P, Jass CN, Litvinov YN, Kalthoff DC, Grigoriev S, Fadeeva T, Douka A, Higham TF, Ersmark E, Pitulko V, Pavlova E, Stewart JR, Węgleński P, Stankovic A, Dalén L.

Glob Chang Biol. 2016 May;22(5):1710-21. doi: 10.1111/gcb.13214. Epub 2016 Feb 25.

PMID:
26919067
21.

Reply to Garner et al.

Shafer ABA, Wolf JBW, Alves PC, Bergström L, Colling G, Dalén L, De Meester L, Ekblom R, Fior S, Hajibabaei M, Hoezel AR, Hoglund J, Jensen EL, Krützen M, Norman AJ, Österling EM, Ouborg NJ, Piccolo J, Primmer CR, Reed FA, Roumet M, Salmona J, Schwartz MK, Segelbacher G, Thaulow J, Valtonen M, Vergeer P, Weissensteiner M, Wheat CW, Vilà C, Zieliński P.

Trends Ecol Evol. 2016 Feb;31(2):83-84. doi: 10.1016/j.tree.2015.11.010. Epub 2015 Dec 17. No abstract available.

PMID:
26704456
22.

Consequences of a demographic bottleneck on genetic structure and variation in the Scandinavian brown bear.

Xenikoudakis G, Ersmark E, Tison JL, Waits L, Kindberg J, Swenson JE, Dalén L.

Mol Ecol. 2015 Jul;24(13):3441-54. doi: 10.1111/mec.13239. Epub 2015 Jun 4.

PMID:
26042479
23.

Ancient wolf genome reveals an early divergence of domestic dog ancestors and admixture into high-latitude breeds.

Skoglund P, Ersmark E, Palkopoulou E, Dalén L.

Curr Biol. 2015 Jun 1;25(11):1515-9. doi: 10.1016/j.cub.2015.04.019. Epub 2015 May 21.

24.

Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth.

Palkopoulou E, Mallick S, Skoglund P, Enk J, Rohland N, Li H, Omrak A, Vartanyan S, Poinar H, Götherström A, Reich D, Dalén L.

Curr Biol. 2015 May 18;25(10):1395-400. doi: 10.1016/j.cub.2015.04.007. Epub 2015 Apr 23.

25.

Genomics and the challenging translation into conservation practice.

Shafer AB, Wolf JB, Alves PC, Bergström L, Bruford MW, Brännström I, Colling G, Dalén L, De Meester L, Ekblom R, Fawcett KD, Fior S, Hajibabaei M, Hill JA, Hoezel AR, Höglund J, Jensen EL, Krause J, Kristensen TN, Krützen M, McKay JK, Norman AJ, Ogden R, Österling EM, Ouborg NJ, Piccolo J, Popović D, Primmer CR, Reed FA, Roumet M, Salmona J, Schenekar T, Schwartz MK, Segelbacher G, Senn H, Thaulow J, Valtonen M, Veale A, Vergeer P, Vijay N, Vilà C, Weissensteiner M, Wennerström L, Wheat CW, Zieliński P.

Trends Ecol Evol. 2015 Feb;30(2):78-87. doi: 10.1016/j.tree.2014.11.009. Epub 2014 Dec 17.

PMID:
25534246
26.

Back to BaySICS: a user-friendly program for Bayesian Statistical Inference from Coalescent Simulations.

Sandoval-Castellanos E, Palkopoulou E, Dalén L.

PLoS One. 2014 May 27;9(5):e98011. doi: 10.1371/journal.pone.0098011. eCollection 2014.

27.

Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears.

Liu S, Lorenzen ED, Fumagalli M, Li B, Harris K, Xiong Z, Zhou L, Korneliussen TS, Somel M, Babbitt C, Wray G, Li J, He W, Wang Z, Fu W, Xiang X, Morgan CC, Doherty A, O'Connell MJ, McInerney JO, Born EW, Dalén L, Dietz R, Orlando L, Sonne C, Zhang G, Nielsen R, Willerslev E, Wang J.

Cell. 2014 May 8;157(4):785-94. doi: 10.1016/j.cell.2014.03.054.

28.

On the origin of the Norwegian lemming.

Lagerholm VK, Sandoval-Castellanos E, Ehrich D, Abramson NI, Nadachowski A, Kalthoff DC, Germonpré M, Angerbjörn A, Stewart JR, Dalén L.

Mol Ecol. 2014 Apr;23(8):2060-71. doi: 10.1111/mec.12698. Epub 2014 Mar 24.

PMID:
24661631
29.

Holarctic genetic structure and range dynamics in the woolly mammoth.

Palkopoulou E, Dalén L, Lister AM, Vartanyan S, Sablin M, Sher A, Edmark VN, Brandström MD, Germonpré M, Barnes I, Thomas JA.

Proc Biol Sci. 2013 Sep 11;280(1770):20131910. doi: 10.1098/rspb.2013.1910. Print 2013 Nov 7.

30.

Variable temperature effects of Open Top Chambers at polar and alpine sites explained by irradiance and snow depth.

Bokhorst S, Huiskes A, Aerts R, Convey P, Cooper EJ, Dalen L, Erschbamer B, Gudmundsson J, Hofgaard A, Hollister RD, Johnstone J, Jónsdóttir IS, Lebouvier M, Van de Vijver B, Wahren CH, Dorrepaal E.

Glob Chang Biol. 2013 Jan;19(1):64-74. doi: 10.1111/gcb.12028. Epub 2012 Oct 18.

PMID:
23504721
31.

Serial population extinctions in a small mammal indicate Late Pleistocene ecosystem instability.

Brace S, Palkopoulou E, Dalén L, Lister AM, Miller R, Otte M, Germonpré M, Blockley SP, Stewart JR, Barnes I.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20532-6. doi: 10.1073/pnas.1213322109. Epub 2012 Nov 26.

32.

The impact of past climate change on genetic variation and population connectivity in the Icelandic arctic fox.

Mellows A, Barnett R, Dalén L, Sandoval-Castellanos E, Linderholm A, McGovern TH, Church MJ, Larson G.

Proc Biol Sci. 2012 Nov 22;279(1747):4568-73. doi: 10.1098/rspb.2012.1796. Epub 2012 Sep 12.

33.

Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation.

Nyström V, Humphrey J, Skoglund P, McKeown NJ, Vartanyan S, Shaw PW, Lidén K, Jakobsson M, Barnes I, Angerbjörn A, Lister A, Dalén L.

Mol Ecol. 2012 Jul;21(14):3391-402. doi: 10.1111/j.1365-294X.2012.05525.x. Epub 2012 Mar 23.

PMID:
22443459
34.

Partial genetic turnover in neandertals: continuity in the East and population replacement in the West.

Dalén L, Orlando L, Shapiro B, Brandström-Durling M, Quam R, Gilbert MT, Díez Fernández-Lomana JC, Willerslev E, Arsuaga JL, Götherström A.

Mol Biol Evol. 2012 Aug;29(8):1893-7. doi: 10.1093/molbev/mss074. Epub 2012 Feb 23.

PMID:
22362080
35.

Kin encounter rate and inbreeding avoidance in canids.

Geffen E, Kam M, Hefner R, Hersteinsson P, Angerbjörn A, Dalèn L, Fuglei E, Norèn K, Adams JR, Vucetich J, Meier TJ, Mech LD, Vonholdt BM, Stahler DR, Wayne RK.

Mol Ecol. 2011 Dec;20(24):5348-58. doi: 10.1111/j.1365-294X.2011.05358.x. Epub 2011 Nov 11.

PMID:
22077191
36.

50,000 years of genetic uniformity in the critically endangered Iberian lynx.

Rodríguez R, Ramírez O, Valdiosera CE, García N, Alda F, Madurell-Malapeira J, Marmi J, Doadrio I, Willerslev E, Götherström A, Arsuaga JL, Thomas MG, Lalueza-Fox C, Dalén L.

Mol Ecol. 2011 Sep;20(18):3785-95. doi: 10.1111/j.1365-294X.2011.05231.x. Epub 2011 Aug 22.

PMID:
21864323
37.

Population structure in relation to host-plant ecology and Wolbachia infestation in the comma butterfly.

Kodandaramaiah U, Weingartner E, Janz N, Dalén L, Nylin S.

J Evol Biol. 2011 Oct;24(10):2173-85. doi: 10.1111/j.1420-9101.2011.02352.x. Epub 2011 Jul 11.

38.

Temporal genetic change in the last remaining population of woolly mammoth.

Nyström V, Dalén L, Vartanyan S, Lidén K, Ryman N, Angerbjörn A.

Proc Biol Sci. 2010 Aug 7;277(1692):2331-7. doi: 10.1098/rspb.2010.0301. Epub 2010 Mar 31.

39.

Convergent evolution, habitat shifts and variable diversification rates in the ovenbird-woodcreeper family (Furnariidae).

Irestedt M, Fjeldså J, Dalén L, Ericson PG.

BMC Evol Biol. 2009 Nov 21;9:268. doi: 10.1186/1471-2148-9-268.

40.

Refugia revisited: individualistic responses of species in space and time.

Stewart JR, Lister AM, Barnes I, Dalén L.

Proc Biol Sci. 2010 Mar 7;277(1682):661-71. doi: 10.1098/rspb.2009.1272. Epub 2009 Oct 28.

41.

The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus).

Miller W, Drautz DI, Janecka JE, Lesk AM, Ratan A, Tomsho LP, Packard M, Zhang Y, McClellan LR, Qi J, Zhao F, Gilbert MT, Dalén L, Arsuaga JL, Ericson PG, Huson DH, Helgen KM, Murphy WJ, Götherström A, Schuster SC.

Genome Res. 2009 Feb;19(2):213-20. doi: 10.1101/gr.082628.108. Epub 2009 Jan 12.

42.

Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes.

Gilbert MT, Drautz DI, Lesk AM, Ho SY, Qi J, Ratan A, Hsu CH, Sher A, Dalén L, Götherström A, Tomsho LP, Rendulic S, Packard M, Campos PF, Kuznetsova TV, Shidlovskiy F, Tikhonov A, Willerslev E, Iacumin P, Buigues B, Ericson PG, Germonpré M, Kosintsev P, Nikolaev V, Nowak-Kemp M, Knight JR, Irzyk GP, Perbost CS, Fredrikson KM, Harkins TT, Sheridan S, Miller W, Schuster SC.

Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8327-32. doi: 10.1073/pnas.0802315105. Epub 2008 Jun 9.

43.

Staying out in the cold: glacial refugia and mitochondrial DNA phylogeography in ancient European brown bears.

Valdiosera CE, García N, Anderung C, Dalén L, Crégut-Bonnoure E, Kahlke RD, Stiller M, Brandström M, Thomas MG, Arsuaga JL, Götherström A, Barnes I.

Mol Ecol. 2007 Dec;16(24):5140-8. Epub 2007 Nov 21.

PMID:
18031475
44.

Whole-genome shotgun sequencing of mitochondria from ancient hair shafts.

Gilbert MT, Tomsho LP, Rendulic S, Packard M, Drautz DI, Sher A, Tikhonov A, Dalén L, Kuznetsova T, Kosintsev P, Campos PF, Higham T, Collins MJ, Wilson AS, Shidlovskiy F, Buigues B, Ericson PG, Germonpré M, Götherström A, Iacumin P, Nikolaev V, Nowak-Kemp M, Willerslev E, Knight JR, Irzyk GP, Perbost CS, Fredrikson KM, Harkins TT, Sheridan S, Miller W, Schuster SC.

Science. 2007 Sep 28;317(5846):1927-30.

45.

Sea ice occurrence predicts genetic isolation in the Arctic fox.

Geffen E, Waidyaratne S, Dalén L, Angerbjörn A, Vila C, Hersteinsson P, Fuglei E, White PA, Goltsman M, Kapel CM, Wayne RK.

Mol Ecol. 2007 Oct;16(20):4241-55. Epub 2007 Sep 14.

PMID:
17868292
46.

Food additives and hyperactive behaviour in 3-year-old and 8/9-year-old children in the community: a randomised, double-blinded, placebo-controlled trial.

McCann D, Barrett A, Cooper A, Crumpler D, Dalen L, Grimshaw K, Kitchin E, Lok K, Porteous L, Prince E, Sonuga-Barke E, Warner JO, Stevenson J.

Lancet. 2007 Nov 3;370(9598):1560-7. Erratum in: Lancet. 2007 Nov 3;370(9598):1542.

PMID:
17825405
47.

Ancient DNA reveals lack of postglacial habitat tracking in the arctic fox.

Dalén L, Nyström V, Valdiosera C, Germonpré M, Sablin M, Turner E, Angerbjörn A, Arsuaga JL, Götherström A.

Proc Natl Acad Sci U S A. 2007 Apr 17;104(16):6726-9. Epub 2007 Apr 9.

48.

Typing single polymorphic nucleotides in mitochondrial DNA as a way to access Middle Pleistocene DNA.

Valdiosera C, García N, Dalén L, Smith C, Kahlke RD, Lidén K, Angerbjörn A, Arsuaga JL, Götherström A.

Biol Lett. 2006 Dec 22;2(4):601-3.

49.

Population structure in a critically endangered arctic fox population: does genetics matter?

Dalén L, Kvaløy K, Linnell JD, Elmhagen B, Strand O, Tannerfeldt M, Henttonen H, Fuglei E, Landa A, Angerbjörn A.

Mol Ecol. 2006 Sep;15(10):2809-19.

PMID:
16911202
50.

Prognostic value of refined Wiberg's angle in hip development.

Tudor A, Dalen L, Dugan R, Tomislav P, Ratko S.

Coll Antropol. 2005 Jun;29(1):267-70.

PMID:
16117334

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