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Items: 38

1.

Biological and Epidemiological Consequences of MTBC Diversity.

Coscolla M.

Adv Exp Med Biol. 2017;1019:95-116. doi: 10.1007/978-3-319-64371-7_5. Review.

PMID:
29116631
2.

Tuberculosis in Swiss captive Asian elephants: microevolution of Mycobacterium tuberculosis characterized by multilocus variable-number tandem-repeat analysis and whole-genome sequencing.

Ghielmetti G, Coscolla M, Ruetten M, Friedel U, Loiseau C, Feldmann J, Steinmetz HW, Stucki D, Gagneux S.

Sci Rep. 2017 Nov 7;7(1):14647. doi: 10.1038/s41598-017-15278-9.

3.

Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum.

Ofori-Anyinam B, Dolganov G, Van T, Davis JL, Walter ND, Garcia BJ, Voskuil M, Fissette K, Diels M, Driesen M, Meehan CJ, Yeboah-Manu D, Coscolla M, Gagneux S, Antonio M, Schoolnik G, Gehre F, de Jong BC.

Tuberculosis (Edinb). 2017 May;104:58-64. doi: 10.1016/j.tube.2017.03.001. Epub 2017 Mar 4.

4.

Reversion of antibiotic resistance in Mycobacterium tuberculosis by spiroisoxazoline SMARt-420.

Blondiaux N, Moune M, Desroses M, Frita R, Flipo M, Mathys V, Soetaert K, Kiass M, Delorme V, Djaout K, Trebosc V, Kemmer C, Wintjens R, Wohlkönig A, Antoine R, Huot L, Hot D, Coscolla M, Feldmann J, Gagneux S, Locht C, Brodin P, Gitzinger M, Déprez B, Willand N, Baulard AR.

Science. 2017 Mar 17;355(6330):1206-1211. doi: 10.1126/science.aag1006. Epub 2017 Mar 16.

PMID:
28302858
5.

Within Host Evolution Selects for a Dominant Genotype of Mycobacterium tuberculosis while T Cells Increase Pathogen Genetic Diversity.

Copin R, Wang X, Louie E, Escuyer V, Coscolla M, Gagneux S, Palmer GH, Ernst JD.

PLoS Pathog. 2016 Dec 14;12(12):e1006111. doi: 10.1371/journal.ppat.1006111. eCollection 2016 Dec.

6.

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages.

Stucki D, Brites D, Jeljeli L, Coscolla M, Liu Q, Trauner A, Fenner L, Rutaihwa L, Borrell S, Luo T, Gao Q, Kato-Maeda M, Ballif M, Egger M, Macedo R, Mardassi H, Moreno M, Tudo Vilanova G, Fyfe J, Globan M, Thomas J, Jamieson F, Guthrie JL, Asante-Poku A, Yeboah-Manu D, Wampande E, Ssengooba W, Joloba M, Henry Boom W, Basu I, Bower J, Saraiva M, Vaconcellos SEG, Suffys P, Koch A, Wilkinson R, Gail-Bekker L, Malla B, Ley SD, Beck HP, de Jong BC, Toit K, Sanchez-Padilla E, Bonnet M, Gil-Brusola A, Frank M, Penlap Beng VN, Eisenach K, Alani I, Wangui Ndung'u P, Revathi G, Gehre F, Akter S, Ntoumi F, Stewart-Isherwood L, Ntinginya NE, Rachow A, Hoelscher M, Cirillo DM, Skenders G, Hoffner S, Bakonyte D, Stakenas P, Diel R, Crudu V, Moldovan O, Al-Hajoj S, Otero L, Barletta F, Jane Carter E, Diero L, Supply P, Comas I, Niemann S, Gagneux S.

Nat Genet. 2016 Dec;48(12):1535-1543. doi: 10.1038/ng.3704. Epub 2016 Oct 31.

7.

Standard Genotyping Overestimates Transmission of Mycobacterium tuberculosis among Immigrants in a Low-Incidence Country.

Stucki D, Ballif M, Egger M, Furrer H, Altpeter E, Battegay M, Droz S, Bruderer T, Coscolla M, Borrell S, Zürcher K, Janssens JP, Calmy A, Mazza Stalder J, Jaton K, Rieder HL, Pfyffer GE, Siegrist HH, Hoffmann M, Fehr J, Dolina M, Frei R, Schrenzel J, Böttger EC, Gagneux S, Fenner L.

J Clin Microbiol. 2016 Jul;54(7):1862-1870. doi: 10.1128/JCM.00126-16. Epub 2016 May 18.

8.

M. tuberculosis T Cell Epitope Analysis Reveals Paucity of Antigenic Variation and Identifies Rare Variable TB Antigens.

Coscolla M, Copin R, Sutherland J, Gehre F, de Jong B, Owolabi O, Mbayo G, Giardina F, Ernst JD, Gagneux S.

Cell Host Microbe. 2015 Nov 11;18(5):538-48.

9.

Acquired Resistance to Bedaquiline and Delamanid in Therapy for Tuberculosis.

Bloemberg GV, Keller PM, Stucki D, Trauner A, Borrell S, Latshang T, Coscolla M, Rothe T, Hömke R, Ritter C, Feldmann J, Schulthess B, Gagneux S, Böttger EC.

N Engl J Med. 2015 Nov 12;373(20):1986-8. doi: 10.1056/NEJMc1505196. Erratum in: N Engl J Med. 2015 Dec 17;373(25):e29. Stuckia, David [corrected to Stucki, David].

10.

Geographical and Temporal Structures of Legionella pneumophila Sequence Types in Comunitat Valenciana (Spain), 1998 to 2013.

Sánchez-Busó L, Coscollà M, Palero F, Camaró ML, Gimeno A, Moreno P, Escribano I, López Perezagua MM, Colomina J, Vanaclocha H, González-Candelas F.

Appl Environ Microbiol. 2015 Oct;81(20):7106-13. doi: 10.1128/AEM.02196-15. Epub 2015 Jul 31.

11.

In vivo biosynthesis of terpene nucleosides provides unique chemical markers of Mycobacterium tuberculosis infection.

Young DC, Layre E, Pan SJ, Tapley A, Adamson J, Seshadri C, Wu Z, Buter J, Minnaard AJ, Coscolla M, Gagneux S, Copin R, Ernst JD, Bishai WR, Snider BB, Moody DB.

Chem Biol. 2015 Apr 23;22(4):516-526. doi: 10.1016/j.chembiol.2015.03.015.

12.

DNA replication fidelity in Mycobacterium tuberculosis is mediated by an ancestral prokaryotic proofreader.

Rock JM, Lang UF, Chase MR, Ford CB, Gerrick ER, Gawande R, Coscolla M, Gagneux S, Fortune SM, Lamers MH.

Nat Genet. 2015 Jun;47(6):677-81. doi: 10.1038/ng.3269. Epub 2015 Apr 20.

13.

Genomic epidemiology of multidrug-resistant Mycobacterium tuberculosis during transcontinental spread.

Coscolla M, Barry PM, Oeltmann JE, Koshinsky H, Shaw T, Cilnis M, Posey J, Rose J, Weber T, Fofanov VY, Gagneux S, Kato-Maeda M, Metcalfe JZ.

J Infect Dis. 2015 Jul 15;212(2):302-10. doi: 10.1093/infdis/jiv025. Epub 2015 Jan 18.

14.

Consequences of genomic diversity in Mycobacterium tuberculosis.

Coscolla M, Gagneux S.

Semin Immunol. 2014 Dec;26(6):431-44. doi: 10.1016/j.smim.2014.09.012. Epub 2014 Oct 22. Review.

15.

Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing.

Stucki D, Ballif M, Bodmer T, Coscolla M, Maurer AM, Droz S, Butz C, Borrell S, Längle C, Feldmann J, Furrer H, Mordasini C, Helbling P, Rieder HL, Egger M, Gagneux S, Fenner L.

J Infect Dis. 2015 Apr 15;211(8):1306-16. doi: 10.1093/infdis/jiu601. Epub 2014 Oct 30.

16.

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.

Steiner A, Stucki D, Coscolla M, Borrell S, Gagneux S.

BMC Genomics. 2014 Oct 9;15:881. doi: 10.1186/1471-2164-15-881.

17.

Lipidomics and genomics of Mycobacterium tuberculosis reveal lineage-specific trends in mycolic acid biosynthesis.

Portevin D, Sukumar S, Coscolla M, Shui G, Li B, Guan XL, Bendt AK, Young D, Gagneux S, Wenk MR.

Microbiologyopen. 2014 Dec;3(6):823-35. doi: 10.1002/mbo3.193. Epub 2014 Sep 19.

18.

Impact of in vitro evolution on antigenic diversity of Mycobacterium bovis bacillus Calmette-Guerin (BCG).

Copin R, Coscollá M, Efstathiadis E, Gagneux S, Ernst JD.

Vaccine. 2014 Oct 14;32(45):5998-6004. doi: 10.1016/j.vaccine.2014.07.113. Epub 2014 Sep 6.

19.

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis.

Bos KI, Harkins KM, Herbig A, Coscolla M, Weber N, Comas I, Forrest SA, Bryant JM, Harris SR, Schuenemann VJ, Campbell TJ, Majander K, Wilbur AK, Guichon RA, Wolfe Steadman DL, Cook DC, Niemann S, Behr MA, Zumarraga M, Bastida R, Huson D, Nieselt K, Young D, Parkhill J, Buikstra JE, Gagneux S, Stone AC, Krause J.

Nature. 2014 Oct 23;514(7523):494-7. doi: 10.1038/nature13591. Epub 2014 Aug 20.

20.

Sequence diversity in the pe_pgrs genes of Mycobacterium tuberculosis is independent of human T cell recognition.

Copin R, Coscollá M, Seiffert SN, Bothamley G, Sutherland J, Mbayo G, Gagneux S, Ernst JD.

MBio. 2014 Jan 14;5(1):e00960-13. doi: 10.1128/mBio.00960-13.

21.

Mixed infection by Legionella pneumophila in outbreak patients.

Coscollá M, Fernández C, Colomina J, Sánchez-Busó L, González-Candelas F.

Int J Med Microbiol. 2014 May;304(3-4):307-13. doi: 10.1016/j.ijmm.2013.11.002. Epub 2013 Nov 14.

PMID:
24309206
22.

Mapping of genotype-phenotype diversity among clinical isolates of mycobacterium tuberculosis by sequence-based transcriptional profiling.

Rose G, Cortes T, Comas I, Coscolla M, Gagneux S, Young DB.

Genome Biol Evol. 2013;5(10):1849-62. doi: 10.1093/gbe/evt138.

23.

A new method for extracting skin microbes allows metagenomic analysis of whole-deep skin.

Garcia-Garcerà M, Garcia-Etxebarria K, Coscollà M, Latorre A, Calafell F.

PLoS One. 2013 Sep 20;8(9):e74914. doi: 10.1371/journal.pone.0074914. eCollection 2013.

24.

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.

Comas I, Coscolla M, Luo T, Borrell S, Holt KE, Kato-Maeda M, Parkhill J, Malla B, Berg S, Thwaites G, Yeboah-Manu D, Bothamley G, Mei J, Wei L, Bentley S, Harris SR, Niemann S, Diel R, Aseffa A, Gao Q, Young D, Gagneux S.

Nat Genet. 2013 Oct;45(10):1176-82. doi: 10.1038/ng.2744. Epub 2013 Sep 1.

25.

Novel Mycobacterium tuberculosis complex isolate from a wild chimpanzee.

Coscolla M, Lewin A, Metzger S, Maetz-Rennsing K, Calvignac-Spencer S, Nitsche A, Dabrowski PW, Radonic A, Niemann S, Parkhill J, Couacy-Hymann E, Feldman J, Comas I, Boesch C, Gagneux S, Leendertz FH.

Emerg Infect Dis. 2013 Jun;19(6):969-76. doi: 10.3201/eid1906.121012.

26.

Genetic Characterization of Legionella pneumophila Isolated from a Common Watershed in Comunidad Valenciana, Spain.

Sánchez-Busó L, Coscollá M, Pinto-Carbó M, Catalán V, González-Candelas F.

PLoS One. 2013 Apr 25;8(4):e61564. doi: 10.1371/journal.pone.0061564. Print 2013.

27.

Drug resistance-conferring mutations in Mycobacterium tuberculosis from Madang, Papua New Guinea.

Ballif M, Harino P, Ley S, Coscolla M, Niemann S, Carter R, Coulter C, Borrell S, Siba P, Phuanukoonnon S, Gagneux S, Beck HP.

BMC Microbiol. 2012 Sep 4;12:191. doi: 10.1186/1471-2180-12-191.

28.

Two new rapid SNP-typing methods for classifying Mycobacterium tuberculosis complex into the main phylogenetic lineages.

Stucki D, Malla B, Hostettler S, Huna T, Feldmann J, Yeboah-Manu D, Borrell S, Fenner L, Comas I, Coscollà M, Gagneux S.

PLoS One. 2012;7(7):e41253. doi: 10.1371/journal.pone.0041253. Epub 2012 Jul 20.

29.

Beijing sublineages of Mycobacterium tuberculosis differ in pathogenicity in the guinea pig.

Kato-Maeda M, Shanley CA, Ackart D, Jarlsberg LG, Shang S, Obregon-Henao A, Harton M, Basaraba RJ, Henao-Tamayo M, Barrozo JC, Rose J, Kawamura LM, Coscolla M, Fofanov VY, Koshinsky H, Gagneux S, Hopewell PC, Ordway DJ, Orme IM.

Clin Vaccine Immunol. 2012 Aug;19(8):1227-37. doi: 10.1128/CVI.00250-12. Epub 2012 Jun 20.

30.

Staphylococcus prevails in the skin microbiota of long-term immunodeficient mice.

Garcia-Garcerà M, Coscollà M, Garcia-Etxebarria K, Martín-Caballero J, González-Candelas F, Latorre A, Calafell F.

Environ Microbiol. 2012 Aug;14(8):2087-98. doi: 10.1111/j.1462-2920.2012.02756.x. Epub 2012 Apr 24.

PMID:
22524615
31.

Does M. tuberculosis genomic diversity explain disease diversity?

Coscolla M, Gagneux S.

Drug Discov Today Dis Mech. 2010 Spring;7(1):e43-e59.

32.

Quantifying nonvertical inheritance in the evolution of Legionella pneumophila.

Coscollá M, Comas I, González-Candelas F.

Mol Biol Evol. 2011 Feb;28(2):985-1001. doi: 10.1093/molbev/msq278. Epub 2010 Oct 20.

PMID:
20961962
33.

Legionellosis outbreak associated with asphalt paving machine, Spain, 2009.

Coscollá M, Fenollar J, Escribano I, González-Candelas F.

Emerg Infect Dis. 2010 Sep;16(9):1381-7. doi: 10.3201/eid1609.100248.

34.

Direct sequencing of Legionella pneumophila from respiratory samples for sequence-based typing analysis.

Coscollá M, González-Candelas F.

J Clin Microbiol. 2009 Sep;47(9):2901-5. doi: 10.1128/JCM.00268-09. Epub 2009 Jul 15.

35.

Comparison of clinical and environmental samples of Legionella pneumophila at the nucleotide sequence level.

Coscollá M, González-Candelas F.

Infect Genet Evol. 2009 Sep;9(5):882-8. doi: 10.1016/j.meegid.2009.05.013. Epub 2009 May 22.

PMID:
19465160
36.

Population structure and recombination in environmental isolates of Legionella pneumophila.

Coscollá M, González-Candelas F.

Environ Microbiol. 2007 Mar;9(3):643-56.

PMID:
17298365
37.

Genetic variability in environmental isolates of Legionella pneumophila from Comunidad Valenciana (Spain).

Coscollá M, Gosalbes MJ, Catalán V, González-Candelas F.

Environ Microbiol. 2006 Jun;8(6):1056-63.

PMID:
16689726
38.

Genetic similarity of hepatitis C virus and fibrosis progression in chronic and recurrent infection after liver transplantation.

López-Labrador FX, Bracho MA, Berenguer M, Coscollà M, Rayón JM, Prieto M, Carrasco D, Gómez MD, Moya A, González-Candelas F.

J Viral Hepat. 2006 Feb;13(2):104-15.

PMID:
16436128

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