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Items: 40

1.

A FAIR guide for data providers to maximise sharing of human genomic data.

Corpas M, Kovalevskaya NV, McMurray A, Nielsen FGG.

PLoS Comput Biol. 2018 Mar 15;14(3):e1005873. doi: 10.1371/journal.pcbi.1005873. eCollection 2018 Mar.

2.

APPLaUD: access for patients and participants to individual level uninterpreted genomic data.

Thorogood A, Bobe J, Prainsack B, Middleton A, Scott E, Nelson S, Corpas M, Bonhomme N, Rodriguez LL, Murtagh M, Kleiderman E; Participant Values Task Team of the Global Alliance for Genomics and Health.

Hum Genomics. 2018 Feb 17;12(1):7. doi: 10.1186/s40246-018-0139-5. Review.

3.

Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination.

Tamiru M, Natsume S, Takagi H, White B, Yaegashi H, Shimizu M, Yoshida K, Uemura A, Oikawa K, Abe A, Urasaki N, Matsumura H, Babil P, Yamanaka S, Matsumoto R, Muranaka S, Girma G, Lopez-Montes A, Gedil M, Bhattacharjee R, Abberton M, Kumar PL, Rabbi I, Tsujimura M, Terachi T, Haerty W, Corpas M, Kamoun S, Kahl G, Takagi H, Asiedu R, Terauchi R.

BMC Biol. 2017 Sep 19;15(1):86. doi: 10.1186/s12915-017-0419-x.

4.

Four simple recommendations to encourage best practices in research software.

Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S.

F1000Res. 2017 Jun 13;6. pii: ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017.

5.

BioCIDER: a Contextualisation InDEx for biological Resources discovery.

Horro C, Cook M, Attwood TK, Brazas MD, Hancock JM, Palagi P, Corpas M, Jimenez R.

Bioinformatics. 2017 Aug 15;33(16):2607-2608. doi: 10.1093/bioinformatics/btx213.

6.

Top 10 metrics for life science software good practices.

Artaza H, Chue Hong N, Corpas M, Corpuz A, Hooft R, Jimenez RC, Leskošek B, Olivier BG, Stourac J, Svobodová Vařeková R, Van Parys T, Vaughan D.

F1000Res. 2016 Aug 16;5. pii: ELIXIR-2000. doi: 10.12688/f1000research.9206.1. eCollection 2016.

7.

Systematic identification of phenotypically enriched loci using a patient network of genomic disorders.

Reyes-Palomares A, Bueno A, Rodríguez-López R, Medina MÁ, Sánchez-Jiménez F, Corpas M, Ranea JA.

BMC Genomics. 2016 Mar 15;17:232. doi: 10.1186/s12864-016-2569-6.

8.

Crowdsourced direct-to-consumer genomic analysis of a family quartet.

Corpas M, Valdivia-Granda W, Torres N, Greshake B, Coletta A, Knaus A, Harrison AP, Cariaso M, Moran F, Nielsen F, Swan D, Weiss Solís DY, Krawitz P, Schacherer F, Schols P, Yang H, Borry P, Glusman G, Robinson PN.

BMC Genomics. 2015 Nov 7;16:910. doi: 10.1186/s12864-015-1973-7.

9.

Lessons from Fraxinus, a crowd-sourced citizen science game in genomics.

Rallapalli G; Fraxinus Players, Saunders DG, Yoshida K, Edwards A, Lugo CA, Collin S, Clavijo B, Corpas M, Swarbreck D, Clark M, Downie JA, Kamoun S; Team Cooper, MacLean D.

Elife. 2015 Jul 29;4:e07460. doi: 10.7554/eLife.07460.

10.

Future opportunities and trends for e-infrastructures and life sciences: going beyond the grid to enable life science data analysis.

Duarte AM, Psomopoulos FE, Blanchet C, Bonvin AM, Corpas M, Franc A, Jimenez RC, de Lucas JM, Nyrönen T, Sipos G, Suhr SB.

Front Genet. 2015 Jun 23;6:197. doi: 10.3389/fgene.2015.00197. eCollection 2015.

11.

Anatomy of BioJS, an open source community for the life sciences.

Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M.

Elife. 2015 Jul 8;4. doi: 10.7554/eLife.07009.

12.

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training.

Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW; GOBLET Consortium.

PLoS Comput Biol. 2015 May 14;11(5):e1004281. doi: 10.1371/journal.pcbi.1004281. eCollection 2015 May. No abstract available.

13.

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training.

Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW; GOBLET Consortium.

PLoS Comput Biol. 2015 Apr 9;11(4):e1004143. doi: 10.1371/journal.pcbi.1004143. eCollection 2015 Apr. Erratum in: PLoS Comput Biol. 2015 May;11(5):e1004281. Atwood, Teresa K [corrected to Attwood, Teresa K].

14.

A quick guide for building a successful bioinformatics community.

Budd A, Corpas M, Brazas MD, Fuller JC, Goecks J, Mulder NJ, Michaut M, Ouellette BF, Pawlik A, Blomberg N.

PLoS Comput Biol. 2015 Feb 5;11(2):e1003972. doi: 10.1371/journal.pcbi.1003972. eCollection 2015 Feb.

15.

Ten simple rules for organizing an unconference.

Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, Wood NT.

PLoS Comput Biol. 2015 Jan 29;11(1):e1003905. doi: 10.1371/journal.pcbi.1003905. eCollection 2015 Jan. No abstract available.

16.

The BioJS article collection of open source components for biological data visualisation.

Corpas M.

F1000Res. 2014 Feb 13;3:56. doi: 10.12688/f1000research.3-56.v1. eCollection 2014.

17.

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, Via A, Watson M, Schneider MV, Attwood TK.

Bioinformatics. 2015 Jan 1;31(1):140-2. doi: 10.1093/bioinformatics/btu601. Epub 2014 Sep 4.

18.

BioJS: an open source standard for biological visualisation - its status in 2014.

Corpas M, Jimenez R, Carbon SJ, García A, Garcia L, Goldberg T, Gomez J, Kalderimis A, Lewis SE, Mulvany I, Pawlik A, Rowland F, Salazar G, Schreiber F, Sillitoe I, Spooner WH, Thanki AS, Villaveces JM, Yachdav G, Hermjakob H.

F1000Res. 2014 Feb 13;3:55. doi: 10.12688/f1000research.3-55.v1. eCollection 2014.

19.

wigExplorer, a BioJS component to visualise wig data.

Thanki AS, Jimenez RC, Kaithakottil GG, Corpas M, Davey RP.

Version 3. F1000Res. 2014 Feb 13 [revised 2016 Jan 1];3:53. eCollection 2014.

20.

The young PI buzz: learning from the organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.

de Ridder J, Bromberg Y, Michaut M, Satagopam VP, Corpas M, MacIntyre G, Alexandrov T.

PLoS Comput Biol. 2013;9(11):e1003350. doi: 10.1371/journal.pcbi.1003350. Epub 2013 Nov 7. No abstract available.

21.

Crowdsourcing the corpasome.

Corpas M.

Source Code Biol Med. 2013 Jun 21;8(1):13. doi: 10.1186/1751-0473-8-13.

22.

iAnn: an event sharing platform for the life sciences.

Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M.

Bioinformatics. 2013 Aug 1;29(15):1919-21. doi: 10.1093/bioinformatics/btt306. Epub 2013 Jun 5.

23.

Bioinformatics workflows and web services in systems biology made easy for experimentalists.

Jimenez RC, Corpas M.

Methods Mol Biol. 2013;1021:299-310. doi: 10.1007/978-1-62703-450-0_16.

PMID:
23715992
24.

BioJS: an open source JavaScript framework for biological data visualization.

Gómez J, García LJ, Salazar GA, Villaveces J, Gore S, García A, Martín MJ, Launay G, Alcántara R, Del-Toro N, Dumousseau M, Orchard S, Velankar S, Hermjakob H, Zong C, Ping P, Corpas M, Jiménez RC.

Bioinformatics. 2013 Apr 15;29(8):1103-4. doi: 10.1093/bioinformatics/btt100. Epub 2013 Feb 23.

25.

DECIPHER: web-based, community resource for clinical interpretation of rare variants in developmental disorders.

Swaminathan GJ, Bragin E, Chatzimichali EA, Corpas M, Bevan AP, Wright CF, Carter NP, Hurles ME, Firth HV.

Hum Mol Genet. 2012 Oct 15;21(R1):R37-44. Epub 2012 Sep 8. Review.

26.

Spanish cuts: more economic damage.

Corpas M.

Nature. 2012 Jul 4;487(7405):38. doi: 10.1038/487038d. No abstract available.

PMID:
22763540
27.

How not to be a bioinformatician.

Corpas M, Fatumo S, Schneider R.

Source Code Biol Med. 2012 May 28;7(1):3. doi: 10.1186/1751-0473-7-3.

28.

Interpretation of genomic copy number variants using DECIPHER.

Corpas M, Bragin E, Clayton S, Bevan P, Firth HV.

Curr Protoc Hum Genet. 2012 Jan;Chapter 8:Unit 8.14. doi: 10.1002/0471142905.hg0814s72.

PMID:
22241657
29.

A family experience of personal genomics.

Corpas M.

J Genet Couns. 2012 Jun;21(3):386-91. doi: 10.1007/s10897-011-9473-7. Epub 2012 Jan 6.

PMID:
22223063
30.

Low budget analysis of Direct-To-Consumer genomic testing familial data.

Glusman G, Cariaso M, Jimenez R, Swan D, Greshake B, Bhak J, Logan DW, Corpas M.

F1000Res. 2012 Jul 16;1:3. doi: 10.12688/f1000research.1-3.v1. eCollection 2012.

31.

A genome blogger manifesto.

Corpas M.

Gigascience. 2012 Oct 26;1(1):15. doi: 10.1186/2047-217X-1-15.

32.

myKaryoView: a light-weight client for visualization of genomic data.

Jimenez RC, Salazar GA, Gel B, Dopazo J, Mulder N, Corpas M.

PLoS One. 2011;6(10):e26345. doi: 10.1371/journal.pone.0026345. Epub 2011 Oct 26.

33.

Bamako 2009 conference on the bioinformatics of infectious diseases.

Corpas M, Doumbia S, Gascuel O, Mulder N.

Infect Genet Evol. 2011 Jun;11(4):695-7. doi: 10.1016/j.meegid.2011.02.012. Epub 2011 Feb 23. No abstract available.

PMID:
21352953
34.

DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.

Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM, Carter NP.

Am J Hum Genet. 2009 Apr;84(4):524-33. doi: 10.1016/j.ajhg.2009.03.010. Epub 2009 Apr 2.

35.

Ten simple rules for organizing a scientific meeting.

Corpas M, Gehlenborg N, Janga SC, Bourne PE.

PLoS Comput Biol. 2008 Jun 27;4(6):e1000080. doi: 10.1371/journal.pcbi.1000080. No abstract available.

36.

Community outreach.

Corpas M.

Nature. 2005 Aug 25;436(7054):1204. No abstract available.

PMID:
16144051
37.

Effect of octreotide on plasma lipid metabolism in acromegaly.

Benito P, Calañas A, Galvez MA, Corpas MS.

Ann Pharmacother. 1994 Oct;28(10):1198. No abstract available.

PMID:
7841581
38.

Sex differences in growth hormone response to growth hormone-releasing hormone.

Benito P, Avila L, Corpas MS, Jiménez JA, Cacicedo L, Sánchez Franco F.

J Endocrinol Invest. 1991 Apr;14(4):265-8.

PMID:
1865077
39.

Control of hyperaldosteronism by ketoconazole.

Benito P, Corpas MS, Quesada JM, Jiménez JA.

Drug Intell Clin Pharm. 1987 Sep;21(9):752. No abstract available.

PMID:
3652938
40.

[Optimum time of insulin therapy in type I diabetes mellitus].

Vílchez Joya R, Miguel B, Sánchez-Cantalejo E, Luna J, Corpas MS.

Med Clin (Barc). 1986 Jul 12;87(6):228-30. Spanish. No abstract available.

PMID:
3526020

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