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Items: 37


Genetics and Crime: Integrating New Genomic Discoveries Into Psychological Research About Antisocial Behavior.

Wertz J, Caspi A, Belsky DW, Beckley AL, Arseneault L, Barnes JC, Corcoran DL, Hogan S, Houts RM, Morgan N, Odgers CL, Prinz JA, Sugden K, Williams BS, Poulton R, Moffitt TE.

Psychol Sci. 2018 Mar 1:956797617744542. doi: 10.1177/0956797617744542. [Epub ahead of print]


Transcriptional profiling reveals distinct classes of parathyroid tumors in PHPT.

Koh J, Hogue JA, Roman SA, Scheri RP, Fradin H, Corcoran DL, Sosa JA.

Endocr Relat Cancer. 2018 Apr;25(4):407-420. doi: 10.1530/ERC-17-0470.


Analysis of DNA Methylation in Young People: Limited Evidence for an Association Between Victimization Stress and Epigenetic Variation in Blood.

Marzi SJ, Sugden K, Arseneault L, Belsky DW, Burrage J, Corcoran DL, Danese A, Fisher HL, Hannon E, Moffitt TE, Odgers CL, Pariante C, Poulton R, Williams BS, Wong CCY, Mill J, Caspi A.

Am J Psychiatry. 2018 Jan 12:appiajp201717060693. doi: 10.1176/appi.ajp.2017.17060693. [Epub ahead of print]


Eleven Telomere, Epigenetic Clock, and Biomarker-Composite Quantifications of Biological Aging: Do They Measure the Same Thing?

Belsky DW, Moffitt TE, Cohen AA, Corcoran DL, Levine ME, Prinz JA, Schaefer J, Sugden K, Williams B, Poulton R, Caspi A.

Am J Epidemiol. 2017 Nov 15. doi: 10.1093/aje/kwx346. [Epub ahead of print]


Genome Architecture and Evolution of a Unichromosomal Asexual Nematode.

Fradin H, Kiontke K, Zegar C, Gutwein M, Lucas J, Kovtun M, Corcoran DL, Baugh LR, Fitch DHA, Piano F, Gunsalus KC.

Curr Biol. 2017 Oct 9;27(19):2928-2939.e6. doi: 10.1016/j.cub.2017.08.038. Epub 2017 Sep 21.


Arginase1 Deficiency in Monocytes/Macrophages Upregulates Inducible Nitric Oxide Synthase To Promote Cutaneous Contact Hypersensitivity.

Suwanpradid J, Shih M, Pontius L, Yang B, Birukova A, Guttman-Yassky E, Corcoran DL, Que LG, Tighe RM, MacLeod AS.

J Immunol. 2017 Sep 1;199(5):1827-1834. doi: 10.4049/jimmunol.1700739. Epub 2017 Jul 26.


miR-93 regulates Msk2-mediated chromatin remodelling in diabetic nephropathy.

Badal SS, Wang Y, Long J, Corcoran DL, Chang BH, Truong LD, Kanwar YS, Overbeek PA, Danesh FR.

Nat Commun. 2016 Jun 28;7:12076. doi: 10.1038/ncomms12076.


The Genetics of Success: How Single-Nucleotide Polymorphisms Associated With Educational Attainment Relate to Life-Course Development.

Belsky DW, Moffitt TE, Corcoran DL, Domingue B, Harrington H, Hogan S, Houts R, Ramrakha S, Sugden K, Williams BS, Poulton R, Caspi A.

Psychol Sci. 2016 Jul;27(7):957-72. doi: 10.1177/0956797616643070. Epub 2016 Jun 1.


A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes.

Doss JF, Corcoran DL, Jima DD, Telen MJ, Dave SS, Chi JT.

BMC Genomics. 2015 Nov 16;16:952. doi: 10.1186/s12864-015-2156-2.


Perspectives on Unidirectional versus Divergent Transcription.

Duttke SH, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U.

Mol Cell. 2015 Nov 5;60(3):348-9. doi: 10.1016/j.molcel.2015.10.014. No abstract available.


Quantification of biological aging in young adults.

Belsky DW, Caspi A, Houts R, Cohen HJ, Corcoran DL, Danese A, Harrington H, Israel S, Levine ME, Schaefer JD, Sugden K, Williams B, Yashin AI, Poulton R, Moffitt TE.

Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):E4104-10. doi: 10.1073/pnas.1506264112. Epub 2015 Jul 6.


Is Adult ADHD a Childhood-Onset Neurodevelopmental Disorder? Evidence From a Four-Decade Longitudinal Cohort Study.

Moffitt TE, Houts R, Asherson P, Belsky DW, Corcoran DL, Hammerle M, Harrington H, Hogan S, Meier MH, Polanczyk GV, Poulton R, Ramrakha S, Sugden K, Williams B, Rohde LA, Caspi A.

Am J Psychiatry. 2015 Oct;172(10):967-77. doi: 10.1176/appi.ajp.2015.14101266. Epub 2015 May 22.


Human promoters are intrinsically directional.

Duttke SH, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U.

Mol Cell. 2015 Feb 19;57(4):674-84. doi: 10.1016/j.molcel.2014.12.029. Epub 2015 Jan 29.


Pax3 expression enhances PDGF-B-induced brainstem gliomagenesis and characterizes a subset of brainstem glioma.

Misuraca KL, Barton KL, Chung A, Diaz AK, Conway SJ, Corcoran DL, Baker SJ, Becher OJ.

Acta Neuropathol Commun. 2014 Oct 21;2:134. doi: 10.1186/s40478-014-0134-6.


Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures.

Morton T, Petricka J, Corcoran DL, Li S, Winter CM, Carda A, Benfey PN, Ohler U, Megraw M.

Plant Cell. 2014 Jul;26(7):2746-60. doi: 10.1105/tpc.114.125617. Epub 2014 Jul 17.


Differential Angiogenic Gene Expression in TP53 Wild-Type and Mutant Ovarian Cancer Cell Lines.

Davidson BA, Rubatt JM, Corcoran DL, Teoh DK, Bernardini MQ, Grace LA, Soper WJ, Berchuck A, Siamakpour-Reihani S, Chen W, Owzar K, Murphy SK, Secord AA.

Front Oncol. 2014 Jun 20;4:163. doi: 10.3389/fonc.2014.00163. eCollection 2014.


Lesions from patients with sporadic cerebral cavernous malformations harbor somatic mutations in the CCM genes: evidence for a common biochemical pathway for CCM pathogenesis.

McDonald DA, Shi C, Shenkar R, Gallione CJ, Akers AL, Li S, De Castro N, Berg MJ, Corcoran DL, Awad IA, Marchuk DA.

Hum Mol Genet. 2014 Aug 15;23(16):4357-70. doi: 10.1093/hmg/ddu153. Epub 2014 Apr 3.


Analysis of the mRNA targetome of microRNAs expressed by Marek's disease virus.

Parnas O, Corcoran DL, Cullen BR.

MBio. 2014 Jan 21;5(1):e01060-13. doi: 10.1128/mBio.01060-13.


Genome reference and sequence variation in the large repetitive central exon of human MUC5AC.

Guo X, Zheng S, Dang H, Pace RG, Stonebraker JR, Jones CD, Boellmann F, Yuan G, Haridass P, Fedrigo O, Corcoran DL, Seibold MA, Ranade SS, Knowles MR, O'Neal WK, Voynow JA.

Am J Respir Cell Mol Biol. 2014 Jan;50(1):223-32. doi: 10.1165/rcmb.2013-0235OC.


MicroRNA target site identification by integrating sequence and binding information.

Majoros WH, Lekprasert P, Mukherjee N, Skalsky RL, Corcoran DL, Cullen BR, Ohler U.

Nat Methods. 2013 Jul;10(7):630-3. doi: 10.1038/nmeth.2489. Epub 2013 May 26.


FMRP targets distinct mRNA sequence elements to regulate protein expression.

Ascano M Jr, Mukherjee N, Bandaru P, Miller JB, Nusbaum JD, Corcoran DL, Langlois C, Munschauer M, Dewell S, Hafner M, Williams Z, Ohler U, Tuschl T.

Nature. 2012 Dec 20;492(7429):382-6. doi: 10.1038/nature11737. Epub 2012 Dec 12.


The viral and cellular microRNA targetome in lymphoblastoid cell lines.

Skalsky RL, Corcoran DL, Gottwein E, Frank CL, Kang D, Hafner M, Nusbaum JD, Feederle R, Delecluse HJ, Luftig MA, Tuschl T, Ohler U, Cullen BR.

PLoS Pathog. 2012 Jan;8(1):e1002484. doi: 10.1371/journal.ppat.1002484. Epub 2012 Jan 26.


Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines.

Gottwein E, Corcoran DL, Mukherjee N, Skalsky RL, Hafner M, Nusbaum JD, Shamulailatpam P, Love CL, Dave SS, Tuschl T, Ohler U, Cullen BR.

Cell Host Microbe. 2011 Nov 17;10(5):515-26. doi: 10.1016/j.chom.2011.09.012.


High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis.

Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN.

Genome Res. 2012 Jan;22(1):163-76. doi: 10.1101/gr.123547.111. Epub 2011 Sep 22.


PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.

Corcoran DL, Georgiev S, Mukherjee N, Gottwein E, Skalsky RL, Keene JD, Ohler U.

Genome Biol. 2011 Aug 18;12(8):R79. doi: 10.1186/gb-2011-12-8-r79.


Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.

Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, Hafner M, Ascano M Jr, Tuschl T, Ohler U, Keene JD.

Mol Cell. 2011 Aug 5;43(3):327-39. doi: 10.1016/j.molcel.2011.06.007. Epub 2011 Jun 30.


Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level.

Rach EA, Winter DR, Benjamin AM, Corcoran DL, Ni T, Zhu J, Ohler U.

PLoS Genet. 2011 Jan 13;7(1):e1001274. doi: 10.1371/journal.pgen.1001274.


Gene expression divergence recapitulates the developmental hourglass model.

Kalinka AT, Varga KM, Gerrard DT, Preibisch S, Corcoran DL, Jarrells J, Ohler U, Bergman CM, Tomancak P.

Nature. 2010 Dec 9;468(7325):811-4. doi: 10.1038/nature09634.


The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery.

Parry TJ, Theisen JW, Hsu JY, Wang YL, Corcoran DL, Eustice M, Ohler U, Kadonaga JT.

Genes Dev. 2010 Sep 15;24(18):2013-8. doi: 10.1101/gad.1951110. Epub 2010 Aug 27.


A paired-end sequencing strategy to map the complex landscape of transcription initiation.

Ni T, Corcoran DL, Rach EA, Song S, Spana EP, Gao Y, Ohler U, Zhu J.

Nat Methods. 2010 Jul;7(7):521-7. doi: 10.1038/nmeth.1464. Epub 2010 May 23.


Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data.

Corcoran DL, Pandit KV, Gordon B, Bhattacharjee A, Kaminski N, Benos PV.

PLoS One. 2009;4(4):e5279. doi: 10.1371/journal.pone.0005279. Epub 2009 Apr 23.


Web-based identification of evolutionary conserved DNA cis-regulatory elements.

Benos PV, Corcoran DL, Feingold E.

Methods Mol Biol. 2007;395:425-36.


Deregulation of common genes by c-Myc and its direct target, MT-MC1.

Rogulski KR, Cohen DE, Corcoran DL, Benos PV, Prochownik EV.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):18968-73. Epub 2005 Dec 19.


FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting.

Corcoran DL, Feingold E, Benos PV.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W442-6.


enoLOGOS: a versatile web tool for energy normalized sequence logos.

Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W389-92.


Footer: a quantitative comparative genomics method for efficient recognition of cis-regulatory elements.

Corcoran DL, Feingold E, Dominick J, Wright M, Harnaha J, Trucco M, Giannoukakis N, Benos PV.

Genome Res. 2005 Jun;15(6):840-7.

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