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Items: 1 to 50 of 129

1.

Binary Classifier Calibration Using an Ensemble of Piecewise Linear Regression Models.

Naeini MP, Cooper GF.

Knowl Inf Syst. 2018 Jan;54(1):151-170. doi: 10.1007/s10115-017-1133-2. Epub 2017 Nov 17.

PMID:
29606784
2.

Precision Oncology beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics.

Ding MQ, Chen L, Cooper GF, Young JD, Lu X.

Mol Cancer Res. 2018 Feb;16(2):269-278. doi: 10.1158/1541-7786.MCR-17-0378. Epub 2017 Nov 13.

PMID:
29133589
3.

Automated influenza case detection for public health surveillance and clinical diagnosis using dynamic influenza prevalence method.

Tsui F, Ye Y, Ruiz V, Cooper GF, Wagner MM.

J Public Health (Oxf). 2017 Oct 20:1-8. doi: 10.1093/pubmed/fdx141. [Epub ahead of print]

PMID:
29059331
4.

Eye-tracking for clinical decision support: A method to capture automatically what physicians are viewing in the EMR.

King AJ, Hochheiser H, Visweswaran S, Clermont G, Cooper GF.

AMIA Jt Summits Transl Sci Proc. 2017 Jul 26;2017:512-521. eCollection 2017.

5.

A Bayesian system to detect and characterize overlapping outbreaks.

Aronis JM, Millett NE, Wagner MM, Tsui F, Ye Y, Ferraro JP, Haug PJ, Gesteland PH, Cooper GF.

J Biomed Inform. 2017 Sep;73:171-181. doi: 10.1016/j.jbi.2017.08.003. Epub 2017 Aug 7.

PMID:
28797710
6.

The effects of natural language processing on cross-institutional portability of influenza case detection for disease surveillance.

Ferraro JP, Ye Y, Gesteland PH, Haug PJ, Tsui FR, Cooper GF, Van Bree R, Ginter T, Nowalk AJ, Wagner M.

Appl Clin Inform. 2017 May 31;8(2):560-580. doi: 10.4338/ACI-2016-12-RA-0211.

PMID:
28561130
7.

A study of the transferability of influenza case detection systems between two large healthcare systems.

Ye Y, Wagner MM, Cooper GF, Ferraro JP, Su H, Gesteland PH, Haug PJ, Millett NE, Aronis JM, Nowalk AJ, Ruiz VM, López Pineda A, Shi L, Van Bree R, Ginter T, Tsui F.

PLoS One. 2017 Apr 5;12(4):e0174970. doi: 10.1371/journal.pone.0174970. eCollection 2017.

8.

Binary Classifier Calibration Using an Ensemble of Linear Trend Estimation.

Naeini MP, Cooper GF.

Proc SIAM Int Conf Data Min. 2016 May;2016:261-269. doi: 10.1137/1.9781611974348.30.

9.

Binary Classifier Calibration using an Ensemble of Near Isotonic Regression Models.

Naeini MP, Cooper GF.

Proc IEEE Int Conf Data Min. 2016 Dec;2016:360-369. doi: 10.1109/ICDM.2016.0047. Epub 2017 Feb 2.

10.

Signal-Oriented Pathway Analyses Reveal a Signaling Complex as a Synthetic Lethal Target for p53 Mutations.

Lu S, Cai C, Yan G, Zhou Z, Wan Y, Chen V, Chen L, Cooper GF, Obeid LM, Hannun YA, Lee AV, Lu X.

Cancer Res. 2016 Dec 1;76(23):6785-6794. Epub 2016 Oct 10.

11.

Outlier-based detection of unusual patient-management actions: An ICU study.

Hauskrecht M, Batal I, Hong C, Nguyen Q, Cooper GF, Visweswaran S, Clermont G.

J Biomed Inform. 2016 Dec;64:211-221. doi: 10.1016/j.jbi.2016.10.002. Epub 2016 Oct 5.

12.

A Bayesian Approach for Identifying Multivariate Differences Between Groups.

Sverchkov Y, Cooper GF.

Adv Intell Data Anal. 2015 Oct;9385:275-285. Epub 2015 Nov 22.

13.

Binary Classifier Calibration Using a Bayesian Non-Parametric Approach.

Naeini MP, Cooper GF, Hauskrecht M.

Proc SIAM Int Conf Data Min. 2015;2015:208-216.

14.

Comparison of machine learning classifiers for influenza detection from emergency department free-text reports.

López Pineda A, Ye Y, Visweswaran S, Cooper GF, Wagner MM, Tsui FR.

J Biomed Inform. 2015 Dec;58:60-69. doi: 10.1016/j.jbi.2015.08.019. Epub 2015 Sep 16.

15.

The center for causal discovery of biomedical knowledge from big data.

Cooper GF, Bahar I, Becich MJ, Benos PV, Berg J, Espino JU, Glymour C, Jacobson RC, Kienholz M, Lee AV, Lu X, Scheines R; Center for Causal Discovery team.

J Am Med Inform Assoc. 2015 Nov;22(6):1132-6. doi: 10.1093/jamia/ocv059. Epub 2015 Jul 2.

16.

Personalized Modeling for Prediction with Decision-Path Models.

Visweswaran S, Ferreira A, Ribeiro GA, Oliveira AC, Cooper GF.

PLoS One. 2015 Jun 22;10(6):e0131022. doi: 10.1371/journal.pone.0131022. eCollection 2015.

17.

Obtaining Well Calibrated Probabilities Using Bayesian Binning.

Naeini MP, Cooper GF, Hauskrecht M.

Proc Conf AAAI Artif Intell. 2015 Jan;2015:2901-2907.

18.

Selective model averaging with bayesian rule learning for predictive biomedicine.

Balasubramanian JB, Visweswaran S, Cooper GF, Gopalakrishnan V.

AMIA Jt Summits Transl Sci Proc. 2014 Apr 7;2014:17-22. eCollection 2014.

19.

Development and Preliminary Evaluation of a Prototype of a Learning Electronic Medical Record System.

King AJ, Cooper GF, Hochheiser H, Clermont G, Visweswaran S.

AMIA Annu Symp Proc. 2015 Nov 5;2015:1967-75. eCollection 2015.

20.

A Temporal Pattern Mining Approach for Classifying Electronic Health Record Data.

Batal I, Valizadegan H, Cooper GF, Hauskrecht M.

ACM Trans Intell Syst Technol. 2013 Sep;4(4). doi: 10.1145/2508037.2508044.

21.

A method for detecting and characterizing outbreaks of infectious disease from clinical reports.

Cooper GF, Villamarin R, Rich Tsui FC, Millett N, Espino JU, Wagner MM.

J Biomed Inform. 2015 Feb;53:15-26. doi: 10.1016/j.jbi.2014.08.011. Epub 2014 Aug 30.

22.

A comparative analysis of methods for predicting clinical outcomes using high-dimensional genomic datasets.

Jiang X, Cai B, Xue D, Lu X, Cooper GF, Neapolitan RE.

J Am Med Inform Assoc. 2014 Oct;21(e2):e312-9. doi: 10.1136/amiajnl-2013-002358. Epub 2014 Apr 15.

23.

Decision path models for patient-specific modeling of patient outcomes.

Ferreira A, Cooper GF, Visweswaran S.

AMIA Annu Symp Proc. 2013 Nov 16;2013:413-21. eCollection 2013.

24.

Application of Bayesian logistic regression to mining biomedical data.

Avali VR, Cooper GF, Gopalakrishnan V.

AMIA Annu Symp Proc. 2014 Nov 14;2014:266-73. eCollection 2014.

25.

Distinct signaling roles of ceramide species in yeast revealed through systematic perturbation and systems biology analyses.

Montefusco DJ, Chen L, Matmati N, Lu S, Newcomb B, Cooper GF, Hannun YA, Lu X.

Sci Signal. 2013 Oct 29;6(299):rs14. doi: 10.1126/scisignal.2004515.

26.

Outlier detection for patient monitoring and alerting.

Hauskrecht M, Batal I, Valko M, Visweswaran S, Cooper GF, Clermont G.

J Biomed Inform. 2013 Feb;46(1):47-55. doi: 10.1016/j.jbi.2012.08.004. Epub 2012 Aug 27.

27.

Improving the prediction of clinical outcomes from genomic data using multiresolution analysis.

Hennings-Yeomans PH, Cooper GF.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Sep-Oct;9(5):1442-50.

PMID:
22641708
28.

Spatial cluster detection using dynamic programming.

Sverchkov Y, Jiang X, Cooper GF.

BMC Med Inform Decis Mak. 2012 Mar 25;12:22. doi: 10.1186/1472-6947-12-22.

29.

A Pattern Mining Approach for Classifying Multivariate Temporal Data.

Batal I, Valizadegan H, Cooper GF, Hauskrecht M.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2011 Nov 12;2011:358-365.

30.

A bayesian method for evaluating and discovering disease loci associations.

Jiang X, Barmada MM, Cooper GF, Becich MJ.

PLoS One. 2011;6(8):e22075. doi: 10.1371/journal.pone.0022075. Epub 2011 Aug 10.

31.

Application of an efficient Bayesian discretization method to biomedical data.

Lustgarten JL, Visweswaran S, Gopalakrishnan V, Cooper GF.

BMC Bioinformatics. 2011 Jul 28;12:309. doi: 10.1186/1471-2105-12-309.

32.

The application of naive Bayes model averaging to predict Alzheimer's disease from genome-wide data.

Wei W, Visweswaran S, Cooper GF.

J Am Med Inform Assoc. 2011 Jul-Aug;18(4):370-5. doi: 10.1136/amiajnl-2011-000101.

33.

Identifying Deviations from Usual Medical Care using a Statistical Approach.

Visweswaran S, Mezger J, Clermont G, Hauskrecht M, Cooper GF.

AMIA Annu Symp Proc. 2010 Nov 13;2010:827-31.

34.

A fast algorithm for learning epistatic genomic relationships.

Jiang X, Neapolitan RE, Barmada MM, Visweswaran S, Cooper GF.

AMIA Annu Symp Proc. 2010 Nov 13;2010:341-5.

35.

Conditional outlier detection for clinical alerting.

Hauskrecht M, Valko M, Batal I, Clermont G, Visweswaran S, Cooper GF.

AMIA Annu Symp Proc. 2010 Nov 13;2010:286-90.

36.

An efficient bayesian method for predicting clinical outcomes from genome-wide data.

Cooper GF, Hennings-Yeomans P, Visweswaran S, Barmada M.

AMIA Annu Symp Proc. 2010 Nov 13;2010:127-31.

37.

Multivariate Bayesian modeling of known and unknown causes of events--an application to biosurveillance.

Shen Y, Cooper GF.

Comput Methods Programs Biomed. 2012 Sep;107(3):436-46. doi: 10.1016/j.cmpb.2010.11.015. Epub 2010 Dec 31.

PMID:
21195503
38.

Conditional Anomaly Detection with Soft Harmonic Functions.

Valko M, Kveton B, Valizadegan H, Cooper GF, Hauskrecht M.

Proc IEEE Int Conf Data Min. 2011;2011:735-743.

39.

Learning Instance-Specific Predictive Models.

Visweswaran S, Cooper GF.

J Mach Learn Res. 2010 Dec 1;11:3333-3369.

40.

A Bayesian spatio-temporal method for disease outbreak detection.

Jiang X, Cooper GF.

J Am Med Inform Assoc. 2010 Jul-Aug;17(4):462-71. doi: 10.1136/jamia.2009.000356.

41.

Learning patient-specific predictive models from clinical data.

Visweswaran S, Angus DC, Hsieh M, Weissfeld L, Yealy D, Cooper GF.

J Biomed Inform. 2010 Oct;43(5):669-85. doi: 10.1016/j.jbi.2010.04.009. Epub 2010 May 5.

42.

Bayesian rule learning for biomedical data mining.

Gopalakrishnan V, Lustgarten JL, Visweswaran S, Cooper GF.

Bioinformatics. 2010 Mar 1;26(5):668-75. doi: 10.1093/bioinformatics/btq005. Epub 2010 Jan 14.

43.

A new prior for bayesian anomaly detection: application to biosurveillance.

Shen Y, Cooper GF.

Methods Inf Med. 2010;49(1):44-53. doi: 10.3414/ME09-01-0008. Epub 2009 Dec 21.

PMID:
20027381
44.

Bayesian modeling of unknown diseases for biosurveillance.

Shen Y, Cooper GF.

AMIA Annu Symp Proc. 2009 Nov 14;2009:589-93.

45.

Generalized AMOC curves for evaluation and improvement of event surveillance.

Jiang X, Cooper GF, Neill DB.

AMIA Annu Symp Proc. 2009 Nov 14;2009:281-5.

46.

Analysis of a failed clinical decision support system for management of congestive heart failure.

Wadhwa R, Fridsma DB, Saul MI, Penrod LE, Visweswaran S, Cooper GF, Chapman W.

AMIA Annu Symp Proc. 2008 Nov 6:773-7.

47.

An assessment of the impact of trauma systems consultation on the level of trauma system development.

Winchell RJ, Ball JW, Cooper GF, Sanddal ND, Rotondo MF.

J Am Coll Surg. 2008 Nov;207(5):623-9. doi: 10.1016/j.jamcollsurg.2008.06.320. Epub 2008 Jul 21.

PMID:
18954772
48.

A statistical approach for detecting deviations from usual medical care.

Mezger J, Visweswaran S, Hauskrecht M, Clermont G, Cooper GF.

AMIA Annu Symp Proc. 2007 Oct 11:1051.

PMID:
18694149
49.

A recursive algorithm for spatial cluster detection.

Jiang X, Cooper GF.

AMIA Annu Symp Proc. 2007 Oct 11:369-73.

50.

Evidence-based anomaly detection in clinical domains.

Hauskrecht M, Valko M, Kveton B, Visweswaran S, Cooper GF.

AMIA Annu Symp Proc. 2007 Oct 11:319-23.

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