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Items: 33

1.

Single-cell profiling screen identifies microtubule-dependent reduction of variability in signaling.

Pesce CG, Zdraljevic S, Peria WJ, Bush A, Repetto MV, Rockwell D, Yu RC, Colman-Lerner A, Brent R.

Mol Syst Biol. 2018 Apr 4;14(4):e7390. doi: 10.15252/msb.20167390.

2.

CDK and MAPK Synergistically Regulate Signaling Dynamics via a Shared Multi-site Phosphorylation Region on the Scaffold Protein Ste5.

Repetto MV, Winters MJ, Bush A, Reiter W, Hollenstein DM, Ammerer G, Pryciak PM, Colman-Lerner A.

Mol Cell. 2018 Mar 15;69(6):938-952.e6. doi: 10.1016/j.molcel.2018.02.018.

PMID:
29547722
3.

Ultrasensitivity in signaling cascades revisited: Linking local and global ultrasensitivity estimations.

Altszyler E, Ventura AC, Colman-Lerner A, Chernomoretz A.

PLoS One. 2017 Jun 29;12(6):e0180083. doi: 10.1371/journal.pone.0180083. eCollection 2017.

4.

Yeast GPCR signaling reflects the fraction of occupied receptors, not the number.

Bush A, Vasen G, Constantinou A, Dunayevich P, Patop IL, Blaustein M, Colman-Lerner A.

Mol Syst Biol. 2016 Dec 29;12(12):898. doi: 10.15252/msb.20166910.

5.

Push-Pull and Feedback Mechanisms Can Align Signaling System Outputs with Inputs.

Andrews SS, Peria WJ, Yu RC, Colman-Lerner A, Brent R.

Cell Syst. 2016 Nov 23;3(5):444-455.e2. doi: 10.1016/j.cels.2016.10.002. Epub 2016 Oct 27.

6.

Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it.

Karlsson M, Janzén DL, Durrieu L, Colman-Lerner A, Kjellsson MC, Cedersund G.

BMC Syst Biol. 2015 Sep 4;9:52. doi: 10.1186/s12918-015-0203-x.

7.

Compartmentalization of a bistable switch enables memory to cross a feedback-driven transition.

Doncic A, Atay O, Valk E, Grande A, Bush A, Vasen G, Colman-Lerner A, Loog M, Skotheim JM.

Cell. 2015 Mar 12;160(6):1182-95. doi: 10.1016/j.cell.2015.02.032.

8.

Impact of upstream and downstream constraints on a signaling module's ultrasensitivity.

Altszyler E, Ventura A, Colman-Lerner A, Chernomoretz A.

Phys Biol. 2014 Oct 14;11(6):066003. doi: 10.1088/1478-3975/11/6/066003.

9.

Utilization of extracellular information before ligand-receptor binding reaches equilibrium expands and shifts the input dynamic range.

Ventura AC, Bush A, Vasen G, Goldín MA, Burkinshaw B, Bhattacharjee N, Folch A, Brent R, Chernomoretz A, Colman-Lerner A.

Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):E3860-9. doi: 10.1073/pnas.1322761111. Epub 2014 Aug 29.

10.

Messages do diffuse faster than messengers: reconciling disparate estimates of the morphogen bicoid diffusion coefficient.

Sigaut L, Pearson JE, Colman-Lerner A, Ponce Dawson S.

PLoS Comput Biol. 2014 Jun 5;10(6):e1003629. doi: 10.1371/journal.pcbi.1003629. eCollection 2014 Jun.

11.

Modification of Akt by SUMO conjugation regulates alternative splicing and cell cycle.

Risso G, Pelisch F, Pozzi B, Mammi P, Blaustein M, Colman-Lerner A, Srebrow A.

Cell Cycle. 2013 Oct 1;12(19):3165-74. doi: 10.4161/cc.26183. Epub 2013 Aug 27.

12.

Modulation of the Akt pathway reveals a novel link with PERK/eIF2α, which is relevant during hypoxia.

Blaustein M, Pérez-Munizaga D, Sánchez MA, Urrutia C, Grande A, Risso G, Srebrow A, Alfaro J, Colman-Lerner A.

PLoS One. 2013 Jul 29;8(7):e69668. doi: 10.1371/journal.pone.0069668. Print 2013.

13.

Pheromone-induced morphogenesis improves osmoadaptation capacity by activating the HOG MAPK pathway.

Baltanás R, Bush A, Couto A, Durrieu L, Hohmann S, Colman-Lerner A.

Sci Signal. 2013 Apr 23;6(272):ra26. doi: 10.1126/scisignal.2003312.

14.

Quantitative measurement of protein relocalization in live cells.

Bush A, Colman-Lerner A.

Biophys J. 2013 Feb 5;104(3):727-36. doi: 10.1016/j.bpj.2012.12.030.

15.

Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast.

Schaber J, Baltanas R, Bush A, Klipp E, Colman-Lerner A.

Mol Syst Biol. 2012;8:622. doi: 10.1038/msb.2012.53.

16.

Using Cell-ID 1.4 with R for microscope-based cytometry.

Bush A, Chernomoretz A, Yu R, Gordon A, Colman-Lerner A.

Curr Protoc Mol Biol. 2012 Oct;Chapter 14:Unit 14.18. doi: 10.1002/0471142727.mb1418s100.

17.

PI3K/AKT pathway regulates phosphorylation of steroid receptors, hormone independence and tumor differentiation in breast cancer.

Riggio M, Polo ML, Blaustein M, Colman-Lerner A, Lüthy I, Lanari C, Novaro V.

Carcinogenesis. 2012 Mar;33(3):509-18. doi: 10.1093/carcin/bgr303. Epub 2011 Dec 17.

PMID:
22180571
18.

Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range.

Thomson TM, Benjamin KR, Bush A, Love T, Pincus D, Resnekov O, Yu RC, Gordon A, Colman-Lerner A, Endy D, Brent R.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20265-70. doi: 10.1073/pnas.1004042108. Epub 2011 Nov 23.

19.

Optical techniques provide information on various effective diffusion coefficients in the presence of traps.

Sigaut L, Ponce ML, Colman-Lerner A, Dawson SP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Nov;82(5 Pt 1):051912. Epub 2010 Nov 9.

PMID:
21230505
20.

Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast.

Bodenmiller B, Wanka S, Kraft C, Urban J, Campbell D, Pedrioli PG, Gerrits B, Picotti P, Lam H, Vitek O, Brusniak MY, Roschitzki B, Zhang C, Shokat KM, Schlapbach R, Colman-Lerner A, Nolan GP, Nesvizhskii AI, Peter M, Loewith R, von Mering C, Aebersold R.

Sci Signal. 2010 Dec 21;3(153):rs4. doi: 10.1126/scisignal.2001182.

21.

Negative feedback that improves information transmission in yeast signalling.

Yu RC, Pesce CG, Colman-Lerner A, Lok L, Pincus D, Serra E, Holl M, Benjamin K, Gordon A, Brent R.

Nature. 2008 Dec 11;456(7223):755-61. doi: 10.1038/nature07513.

22.

The Alpha Project: a model system for systems biology research.

Yu RC, Resnekov O, Abola AP, Andrews SS, Benjamin KR, Bruck J, Burbulis IE, Colman-Lerner A, Endy D, Gordon A, Holl M, Lok L, Pesce CG, Serra E, Smith RD, Thomson TM, Tsong AE, Brent R.

IET Syst Biol. 2008 Sep;2(5):222-33. doi: 10.1049/iet-syb:20080127. Review.

23.

Using Cell-ID 1.4 with R for microscope-based cytometry.

Chernomoretz A, Bush A, Yu R, Gordon A, Colman-Lerner A.

Curr Protoc Mol Biol. 2008 Oct;Chapter 14:Unit 14.18. doi: 10.1002/0471142727.mb1418s84.

24.

Single-cell quantification of molecules and rates using open-source microscope-based cytometry.

Gordon A, Colman-Lerner A, Chin TE, Benjamin KR, Yu RC, Brent R.

Nat Methods. 2007 Feb;4(2):175-81. Epub 2007 Jan 21.

PMID:
17237792
25.

Transforming growth factor beta1 regulates follistatin mRNA expression during in vitro bovine granulosa cell differentiation.

Fazzini M, Vallejo G, Colman-Lerner A, Trigo R, Campo S, Barañao JL, Saragüeta PE.

J Cell Physiol. 2006 Apr;207(1):40-8.

PMID:
16245315
26.

Regulated cell-to-cell variation in a cell-fate decision system.

Colman-Lerner A, Gordon A, Serra E, Chin T, Resnekov O, Endy D, Pesce CG, Brent R.

Nature. 2005 Sep 29;437(7059):699-706. Epub 2005 Sep 18. Erratum in: Nature. 2006 Jan 26;439(7075):502.

27.

Nitric oxide induces gelatinase A (matrix metalloproteinase 2) during rat embryo implantation.

Novaro V, Pustovrh C, Colman-Lerner A, Radisky D, Lo Nostro F, Paz D, Jawerbaum A, González E.

Fertil Steril. 2002 Dec;78(6):1278-87.

PMID:
12477525
28.

Regulation of metalloproteinases by nitric oxide in human trophoblast cells in culture.

Novaro V, Colman-Lerner A, Ortega FV, Jawerbaum A, Paz D, Lo Nostro F, Pustovrh C, Gimeno MF, González E.

Reprod Fertil Dev. 2001;13(5-6):411-20.

PMID:
11833938
29.

Expression of 3 beta-hydroxysteroid dehydrogenase in early bovine embryo development.

Chiappe ME, Lattanzi ML, Colman-Lerner AA, Barañao JL, Saragüeta P.

Mol Reprod Dev. 2002 Feb;61(2):135-41.

PMID:
11803547
30.
31.

In vivo evidences of early neurosteroid synthesis in the developing rat central nervous system and placenta.

Pomata PE, Colman-Lerner AA, Barañao JL, Fiszman ML.

Brain Res Dev Brain Res. 2000 Mar 15;120(1):83-6.

PMID:
10727733
32.

"Mutagenesis" by peptide aptamers identifies genetic network members and pathway connections.

Geyer CR, Colman-Lerner A, Brent R.

Proc Natl Acad Sci U S A. 1999 Jul 20;96(15):8567-72.

33.

Evidence for a role of the alternatively spliced ED-I sequence of fibronectin during ovarian follicular development.

Colman-Lerner A, Fischman ML, Lanuza GM, Bissell DM, Kornblihtt AR, Barañao JL.

Endocrinology. 1999 Jun;140(6):2541-8.

PMID:
10342840

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