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Congenital Ocular Abnormalities in Free-Ranging White-Tailed Deer.

Clarke LL, Niedringhaus KD, Carmichael KP, Keel MK, Fenton H.

Vet Pathol. 2018 Jan 1:300985818759771. doi: 10.1177/0300985818759771. [Epub ahead of print]


Normal aging induces A1-like astrocyte reactivity.

Clarke LE, Liddelow SA, Chakraborty C, Münch AE, Heiman M, Barres BA.

Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):E1896-E1905. doi: 10.1073/pnas.1800165115. Epub 2018 Feb 7.


Fitness tradeoffs of antibiotic resistance in extra-intestinal pathogenic Escherichia coli.

Basra P, Alsaadi A, Bernal-Astrain G, O'Sullivan ML, Hazlett B, Clarke LM, Schoenrock A, Pitre S, Wong A.

Genome Biol Evol. 2018 Feb 7. doi: 10.1093/gbe/evy030. [Epub ahead of print]


Trends in catastrophic health expenditure in India: 1993 to 2014.

Pandey A, Ploubidis GB, Clarke L, Dandona L.

Bull World Health Organ. 2018 Jan 1;96(1):18-28. doi: 10.2471/BLT.17.191759. Epub 2017 Nov 30.


Malignant rectal melanoma in 2 dogs.

Clarke LL, Rissi DR.

Can Vet J. 2018 Feb;59(2):152-154.


The variation in chemical composition of barley feed with or without enzyme supplementation influences nutrient digestibility and subsequently affects performance in piglets.

Clarke LC, Sweeney T, Curley E, Duffy SK, Rajauria G, O'Doherty JV.

J Anim Physiol Anim Nutr (Berl). 2018 Jan 23. doi: 10.1111/jpn.12870. [Epub ahead of print]


Developing the content of a locomotor disability scale for adults in Bangladesh: a qualitative study.

Mahmud I, Clarke L, Ploubidis GB.

Arch Physiother. 2017 Jun 6;7:7. doi: 10.1186/s40945-017-0035-7. eCollection 2017.


A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells.

Kurtz A, Seltmann S, Bairoch A, Bittner MS, Bruce K, Capes-Davis A, Clarke L, Crook JM, Daheron L, Dewender J, Faulconbridge A, Fujibuchi W, Gutteridge A, Hei DJ, Kim YO, Kim JH, Kokocinski AK, Lekschas F, Lomax GP, Loring JF, Ludwig T, Mah N, Matsui T, Müller R, Parkinson H, Sheldon M, Smith K, Stachelscheid H, Stacey G, Streeter I, Veiga A, Xu RH.

Stem Cell Reports. 2018 Jan 9;10(1):1-6. doi: 10.1016/j.stemcr.2017.12.002. Review.


Hospitalisation trends in India from serial cross-sectional nationwide surveys: 1995 to 2014.

Pandey A, Ploubidis GB, Clarke L, Dandona L.

BMJ Open. 2017 Dec 19;7(12):e014188. doi: 10.1136/bmjopen-2016-014188.


Generating a Tolerogenic Cell Therapy Knowledge Graph from Literature.

Lamurias A, Ferreira JD, Clarke LA, Couto FM.

Front Immunol. 2017 Nov 29;8:1656. doi: 10.3389/fimmu.2017.01656. eCollection 2017.


Geo-epidemiology of temporal artery biopsy-positive giant cell arteritis in Australia and New Zealand: is there a seasonal influence?

De Smit E, Clarke L, Sanfilippo PG, Merriman TR, Brown MA, Hill CL, Hewitt AW.

RMD Open. 2017 Aug 29;3(2):e000531. doi: 10.1136/rmdopen-2017-000531. eCollection 2017.


Socio-demographic determinants of the severity of locomotor disability among adults in Bangladesh: a cross-sectional study, December 2010-February 2011.

Mahmud I, Clarke L, Ploubidis GB.

Arch Public Health. 2017 Nov 20;75:47. doi: 10.1186/s13690-017-0217-5. eCollection 2017.


Genetic monitoring of open ocean biodiversity: An evaluation of DNA metabarcoding for processing continuous plankton recorder samples.

Deagle BE, Clarke LJ, Kitchener JA, Polanowski AM, Davidson AT.

Mol Ecol Resour. 2017 Nov 23. doi: 10.1111/1755-0998.12740. [Epub ahead of print]


The European Nucleotide Archive in 2017.

Silvester N, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Harrison PW, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Menchi M, Reddy K, Pakseresht N, Rajan J, Rossello M, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2018 Jan 4;46(D1):D36-D40. doi: 10.1093/nar/gkx1125.


Divergent roles for Clusterin in Lung Injury and Repair.

Habiel DM, Camelo A, Espindola M, Burwell T, Hanna R, Miranda E, Carruthers A, Bell M, Coelho AL, Liu H, Pilataxi F, Clarke L, Grant E, Lewis A, Moore B, Knight DA, Hogaboam CM, Murray LA.

Sci Rep. 2017 Nov 13;7(1):15444. doi: 10.1038/s41598-017-15670-5.


Quantitative magnetic resonance imaging phantoms: A review and the need for a system phantom.

Keenan KE, Ainslie M, Barker AJ, Boss MA, Cecil KM, Charles C, Chenevert TL, Clarke L, Evelhoch JL, Finn P, Gembris D, Gunter JL, Hill DLG, Jack CR Jr, Jackson EF, Liu G, Russek SE, Sharma SD, Steckner M, Stupic KF, Trzasko JD, Yuan C, Zheng J.

Magn Reson Med. 2018 Jan;79(1):48-61. doi: 10.1002/mrm.26982. Epub 2017 Oct 30. Review.


Gene expression signature as an ancillary method in the diagnosis of desmoplastic melanoma.

Clarke LE, Pimentel JD, Zalaznick H, Wang L, Busam KJ.

Hum Pathol. 2017 Dec;70:113-120. doi: 10.1016/j.humpath.2017.10.005. Epub 2017 Oct 24.


Time for healthy investment.

Metcalfe S, Gunasekara S, Baddock K, Clarke L.

N Z Med J. 2017 Oct 27;130(1464):7-10. No abstract available.


Report of the International Stem Cell Banking Initiative Workshop Activity: Current Hurdles and Progress in Seed-Stock Banking of Human Pluripotent Stem Cells.

Kim JH, Kurtz A, Yuan BZ, Zeng F, Lomax G, Loring JF, Crook J, Ju JH, Clarke L, Inamdar MS, Pera M, Firpo MT, Sheldon M, Rahman N, O'Shea O, Pranke P, Zhou Q, Isasi R, Rungsiwiwut R, Kawamata S, Oh S, Ludwig T, Masui T, Novak TJ, Takahashi T, Fujibuchi W, Koo SK, Stacey GN.

Stem Cells Transl Med. 2017 Nov;6(11):1956-1962. doi: 10.1002/sctm.17-0144. Epub 2017 Oct 24.


An Assessment of Imaging Informatics for Precision Medicine in Cancer.

Chennubhotla C, Clarke LP, Fedorov A, Foran D, Harris G, Helton E, Nordstrom R, Prior F, Rubin D, Saltz JH, Shalley E, Sharma A.

Yearb Med Inform. 2017 Aug;26(1):110-119. doi: 10.15265/IY-2017-041. Epub 2017 Sep 11.


Synthetic biology in the UK - An outline of plans and progress.

Clarke LJ, Kitney RI.

Synth Syst Biotechnol. 2016 Oct 17;1(4):243-257. doi: 10.1016/j.synbio.2016.09.003. eCollection 2016 Dec. Review.


A case series of anophthalmic socket cysts excised utilising fibrin sealant.

Wong Y, Clarke L, Lau G.

Orbit. 2017 Oct 23:1-3. doi: 10.1080/01676830.2017.1383482. [Epub ahead of print]


Use of multi-criteria decision analysis to identify potentially dangerous glacial lakes.

Kougkoulos I, Cook SJ, Jomelli V, Clarke L, Symeonakis E, Dortch JM, Edwards LA, Merad M.

Sci Total Environ. 2018 Apr 15;621:1453-1466. doi: 10.1016/j.scitotenv.2017.10.083. Epub 2017 Oct 19.


Natural Killer T-cell Immunotherapy in Combination with Chemotherapy-Induced Immunogenic Cell Death Targets Metastatic Breast Cancer.

Gebremeskel S, Lobert L, Tanner K, Walker B, Oliphant T, Clarke LE, Dellaire G, Johnston B.

Cancer Immunol Res. 2017 Dec;5(12):1086-1097. doi: 10.1158/2326-6066.CIR-17-0229. Epub 2017 Oct 20.


Pathology in Practice.

Brookshire SM, Clarke L, Sanchez S, Stanton JB.

J Am Vet Med Assoc. 2017 Nov 1;251(9):1021-1023. doi: 10.2460/javma.251.9.1021. No abstract available.


Impact of Spatial Scales on the Intercomparison of Climate Scenarios.

Luo W, Steptoe M, Chang Z, Link R, Clarke L, Maciejewski R.

IEEE Comput Graph Appl. 2017;37(5):40-49. doi: 10.1109/MCG.2017.3621222.


Epibenthic and mobile species colonisation of a geotextile artificial surf reef on the south coast of England.

Herbert RJH, Collins K, Mallinson J, Hall AE, Pegg J, Ross K, Clarke L, Clements T.

PLoS One. 2017 Sep 19;12(9):e0184100. doi: 10.1371/journal.pone.0184100. eCollection 2017.


Loss of PRP4K drives anoikis resistance in part by dysregulation of epidermal growth factor receptor endosomal trafficking.

Corkery DP, Clarke LE, Gebremeskel S, Salsman J, Pinder J, Le Page C, Meunier L, Xu Z, Mes-Masson AM, Berman JN, Johnston B, Dellaire G.

Oncogene. 2018 Jan 11;37(2):174-184. doi: 10.1038/onc.2017.318. Epub 2017 Sep 11.


Neurobiology: Diversity reaches the stars.

Clarke LE, Liddelow SA.

Nature. 2017 Aug 23;548(7668):396-397. doi: 10.1038/548396a. No abstract available.


Pathology in Practice. Severe, acute, lobar and diffuse necrosuppurative pneumonia.

Clarke L, Sanchez S, Blás-Machado U, Nagy T.

J Am Vet Med Assoc. 2017 Sep 1;251(5):535-537. doi: 10.2460/javma.251.5.535. No abstract available.


Results from a clinical trial evaluating the efficacy of real-time body surface visual feedback in reducing patient motion during lung cancer radiotherapy.

Price GJ, Faivre-Finn C, Stratford J, Chauhan S, Bewley M, Clarke L, Johnson CN, Moore CJ.

Acta Oncol. 2018 Feb;57(2):211-218. doi: 10.1080/0284186X.2017.1360511. Epub 2017 Aug 7.


Cholecalciferol supplementation of heifer diets increases beef vitamin D concentration and improves beef tenderness.

Duffy SK, O'Doherty JV, Rajauria G, Clarke LC, Cashman KD, Hayes A, O'Grady MN, Kerry JP, Kelly AK.

Meat Sci. 2017 Dec;134:103-110. doi: 10.1016/j.meatsci.2017.07.024. Epub 2017 Jul 31.


Nanoscale steady-state temperature gradients within polymer nanocomposites undergoing continuous-wave photothermal heating from gold nanorods.

Maity S, Wu WC, Tracy JB, Clarke LI, Bochinski JR.

Nanoscale. 2017 Aug 17;9(32):11605-11618. doi: 10.1039/c7nr04613h.


The influence of a gene-expression signature on the treatment of diagnostically challenging melanocytic lesions.

Cockerell C, Tschen J, Billings SD, Evans B, Brown K, Rock C, Clarke LE.

Per Med. 2017 Mar;14(2):123-130. doi: 10.2217/pme-2016-0097. Epub 2017 Jan 23.


Cognitive Support During High-Consequence Episodes of Care in Cardiovascular Surgery.

Conboy HM, Avrunin GS, Clarke LA, Osterweil LJ, Christov SC, Goldman JM, Yule SJ, Zenati MA.

IEEE Int Interdiscip Conf Cogn Methods Situat Aware Decis Support. 2017 Mar;2017. doi: 10.1109/COGSIMA.2017.7929610. Epub 2017 May 18.


Platelet function is modified by common sequence variation in megakaryocyte super enhancers.

Petersen R, Lambourne JJ, Javierre BM, Grassi L, Kreuzhuber R, Ruklisa D, Rosa IM, Tomé AR, Elding H, van Geffen JP, Jiang T, Farrow S, Cairns J, Al-Subaie AM, Ashford S, Attwood A, Batista J, Bouman H, Burden F, Choudry FA, Clarke L, Flicek P, Garner SF, Haimel M, Kempster C, Ladopoulos V, Lenaerts AS, Materek PM, McKinney H, Meacham S, Mead D, Nagy M, Penkett CJ, Rendon A, Seyres D, Sun B, Tuna S, van der Weide ME, Wingett SW, Martens JH, Stegle O, Richardson S, Vallier L, Roberts DJ, Freson K, Wernisch L, Stunnenberg HG, Danesh J, Fraser P, Soranzo N, Butterworth AS, Heemskerk JW, Turro E, Spivakov M, Ouwehand WH, Astle WJ, Downes K, Kostadima M, Frontini M.

Nat Commun. 2017 Jul 13;8:16058. doi: 10.1038/ncomms16058.


Variation in the prevalence of urinary catheters: a profile of National Health Service patients in England.

Shackley DC, Whytock C, Parry G, Clarke L, Vincent C, Harrison A, John A, Provost L, Power M.

BMJ Open. 2017 Jun 23;7(6):e013842. doi: 10.1136/bmjopen-2016-013842.


Corrigendum: Common genetic variation drives molecular heterogeneity in human iPSCs.

Kilpinen H, Goncalves A, Leha A, Afzal V, Alasoo K, Ashford S, Bala S, Bensaddek D, Casale FP, Culley OJ, Danecek P, Faulconbridge A, Harrison PW, Kathuria A, McCarthy D, McCarthy SA, Meleckyte R, Memari Y, Moens N, Soares F, Mann A, Streeter I, Agu CA, Alderton A, Nelson R, Harper S, Patel M, White A, Patel SR, Clarke L, Halai R, Kirton CM, Kolb-Kokocinski A, Beales P, Birney E, Danovi D, Lamond AI, Ouwehand WH, Vallier L, Watt FM, Durbin R, Stegle O, Gaffney DJ.

Nature. 2017 Jun 29;546(7660):686. doi: 10.1038/nature23012. Epub 2017 Jun 14.


Incidence and prevalence of NMOSD in Australia and New Zealand.

Bukhari W, Prain KM, Waters P, Woodhall M, O'Gorman CM, Clarke L, Silvestrini RA, Bundell CS, Abernethy D, Bhuta S, Blum S, Boggild M, Boundy K, Brew BJ, Brown M, Brownlee WJ, Butzkueven H, Carroll WM, Chen C, Coulthard A, Dale RC, Das C, Dear K, Fabis-Pedrini MJ, Fulcher D, Gillis D, Hawke S, Heard R, Henderson APD, Heshmat S, Hodgkinson S, Jimenez-Sanchez S, Killpatrick T, King J, Kneebone C, Kornberg AJ, Lechner-Scott J, Lin MW, Lynch C, Macdonell R, Mason DF, McCombe PA, Pender MP, Pereira JA, Pollard JD, Reddel SW, Shaw C, Spies J, Stankovich J, Sutton I, Vucic S, Walsh M, Wong RC, Yiu EM, Barnett MH, Kermode AG, Marriott MP, Parratt JDE, Slee M, Taylor BV, Willoughby E, Wilson RJ, Vincent A, Broadley SA.

J Neurol Neurosurg Psychiatry. 2017 Aug;88(8):632-638. doi: 10.1136/jnnp-2016-314839. Epub 2017 May 26.


Alignment of 1000 Genomes Project reads to reference assembly GRCh38.

Zheng-Bradley X, Streeter I, Fairley S, Richardson D, Clarke L, Flicek P; 1000 Genomes Project Consortium.

Gigascience. 2017 Jul 1;6(7):1-8. doi: 10.1093/gigascience/gix038.


Pathology in Practice.

Myers A, Clarke L, Ambrose DL, Howerth EW.

J Am Vet Med Assoc. 2017 Jun 1;250(11):1255-1257. doi: 10.2460/javma.250.11.1255. No abstract available.


Cognitive endpoints for therapy development for neuronopathic mucopolysaccharidoses: Results of a consensus procedure.

van der Lee JH, Morton J, Adams HR, Clarke L, Ebbink BJ, Escolar ML, Giugliani R, Harmatz P, Hogan M, Jones S, Kearney S, Muenzer J, Rust S, Semrud-Clikeman M, Wijburg FA, Yu ZF, Janzen D, Shapiro E.

Mol Genet Metab. 2017 Jun;121(2):70-79. doi: 10.1016/j.ymgme.2017.05.004. Epub 2017 May 6. Review.


Common genetic variation drives molecular heterogeneity in human iPSCs.

Kilpinen H, Goncalves A, Leha A, Afzal V, Alasoo K, Ashford S, Bala S, Bensaddek D, Casale FP, Culley OJ, Danecek P, Faulconbridge A, Harrison PW, Kathuria A, McCarthy D, McCarthy SA, Meleckyte R, Memari Y, Moens N, Soares F, Mann A, Streeter I, Agu CA, Alderton A, Nelson R, Harper S, Patel M, White A, Patel SR, Clarke L, Halai R, Kirton CM, Kolb-Kokocinski A, Beales P, Birney E, Danovi D, Lamond AI, Ouwehand WH, Vallier L, Watt FM, Durbin R, Stegle O, Gaffney DJ.

Nature. 2017 Jun 15;546(7658):370-375. doi: 10.1038/nature22403. Epub 2017 May 10. Erratum in: Nature. 2017 Jun 29;546(7660):686.


Mitochondrial replacement in an iPSC model of Leber's hereditary optic neuropathy.

Wong RCB, Lim SY, Hung SSC, Jackson S, Khan S, Van Bergen NJ, De Smit E, Liang HH, Kearns LS, Clarke L, Mackey DA, Hewitt AW, Trounce IA, Pébay A.

Aging (Albany NY). 2017 Apr;9(4):1341-1350. doi: 10.18632/aging.101231.


Horizontal inequity in outpatient care use and untreated morbidity: evidence from nationwide surveys in India between 1995 and 2014.

Pandey A, Ploubidis GB, Clarke L, Dandona L.

Health Policy Plan. 2017 Sep 1;32(7):969-979. doi: 10.1093/heapol/czx016.


Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.

Schneider VA, Graves-Lindsay T, Howe K, Bouk N, Chen HC, Kitts PA, Murphy TD, Pruitt KD, Thibaud-Nissen F, Albracht D, Fulton RS, Kremitzki M, Magrini V, Markovic C, McGrath S, Steinberg KM, Auger K, Chow W, Collins J, Harden G, Hubbard T, Pelan S, Simpson JT, Threadgold G, Torrance J, Wood JM, Clarke L, Koren S, Boitano M, Peluso P, Li H, Chin CS, Phillippy AM, Durbin R, Wilson RK, Flicek P, Eichler EE, Church DM.

Genome Res. 2017 May;27(5):849-864. doi: 10.1101/gr.213611.116. Epub 2017 Apr 10.


Atypical cytologic presentation of a histiocytic sarcoma in a Cavalier King Charles Spaniel dog.

Clarke LL, Kelly LS, Garner B, Brown CA.

J Vet Diagn Invest. 2017 Jul;29(4):541-543. doi: 10.1177/1040638717701521. Epub 2017 Apr 5.


Handheld free space quantum key distribution with dynamic motion compensation.

Chun H, Choi I, Faulkner G, Clarke L, Barber B, George G, Capon C, Niskanen A, Wabnig J, O'Brien D, Bitauld D.

Opt Express. 2017 Mar 20;25(6):6784-6795. doi: 10.1364/OE.25.006784.


Diagnostic Distinction of Malignant Melanoma and Benign Nevi by a Gene Expression Signature and Correlation to Clinical Outcomes.

Ko JS, Matharoo-Ball B, Billings SD, Thomson BJ, Tang JY, Sarin KY, Cai E, Kim J, Rock C, Kimbrell HZ, Flake DD 2nd, Warf MB, Nelson J, Davis T, Miller C, Rushton K, Hartman AR, Wenstrup RJ, Clarke LE.

Cancer Epidemiol Biomarkers Prev. 2017 Jul;26(7):1107-1113. doi: 10.1158/1055-9965.EPI-16-0958. Epub 2017 Apr 4.


Rapid establishment of the European Bank for induced Pluripotent Stem Cells (EBiSC) - the Hot Start experience.

De Sousa PA, Steeg R, Wachter E, Bruce K, King J, Hoeve M, Khadun S, McConnachie G, Holder J, Kurtz A, Seltmann S, Dewender J, Reimann S, Stacey G, O'Shea O, Chapman C, Healy L, Zimmermann H, Bolton B, Rawat T, Atkin I, Veiga A, Kuebler B, Serano BM, Saric T, Hescheler J, Brüstle O, Peitz M, Thiele C, Geijsen N, Holst B, Clausen C, Lako M, Armstrong L, Gupta SK, Kvist AJ, Hicks R, Jonebring A, Brolén G, Ebneth A, Cabrera-Socorro A, Foerch P, Geraerts M, Stummann TC, Harmon S, George C, Streeter I, Clarke L, Parkinson H, Harrison PW, Faulconbridge A, Cherubin L, Burdett T, Trigueros C, Patel MJ, Lucas C, Hardy B, Predan R, Dokler J, Brajnik M, Keminer O, Pless O, Gribbon P, Claussen C, Ringwald A, Kreisel B, Courtney A, Allsopp TE.

Stem Cell Res. 2017 Apr;20:105-114. doi: 10.1016/j.scr.2017.03.002. Epub 2017 Mar 7.

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