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Items: 6

1.

Four simple recommendations to encourage best practices in research software.

Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S.

F1000Res. 2017 Jun 13;6. pii: ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017.

2.

Top 10 metrics for life science software good practices.

Artaza H, Chue Hong N, Corpas M, Corpuz A, Hooft R, Jimenez RC, Leskošek B, Olivier BG, Stourac J, Svobodová Vařeková R, Van Parys T, Vaughan D.

F1000Res. 2016 Aug 16;5. pii: ELIXIR-2000. doi: 10.12688/f1000research.9206.1. eCollection 2016.

3.

hapbin: An Efficient Program for Performing Haplotype-Based Scans for Positive Selection in Large Genomic Datasets.

Maclean CA, Chue Hong NP, Prendergast JG.

Mol Biol Evol. 2015 Nov;32(11):3027-9. doi: 10.1093/molbev/msv172. Epub 2015 Aug 6.

4.

An open science peer review oath.

Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, Scott C, Smith-Unna R, Vieira BM; as part of the AllBio: Open Science & Reproducibility Best Practice Workshop.

Version 2. F1000Res. 2014 Nov 12 [revised 2015 Jan 1];3:271. doi: 10.12688/f1000research.5686.2. eCollection 2014.

5.

Best practices for scientific computing.

Wilson G, Aruliah DA, Brown CT, Chue Hong NP, Davis M, Guy RT, Haddock SH, Huff KD, Mitchell IM, Plumbley MD, Waugh B, White EP, Wilson P.

PLoS Biol. 2014 Jan;12(1):e1001745. doi: 10.1371/journal.pbio.1001745. Epub 2014 Jan 7. No abstract available.

6.

A roadmap for caGrid, an enterprise Grid architecture for biomedical research.

Saltz J, Hastings S, Langella S, Oster S, Kurc T, Payne P, Ferreira R, Plale B, Goble C, Ervin D, Sharma A, Pan T, Permar J, Brezany P, Siebenlist F, Madduri R, Foster I, Shanbhag K, Mead C, Chue Hong N.

Stud Health Technol Inform. 2008;138:224-37.

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