Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 48

1.

Draft Genome Sequences of Two Novel Sub-Antarctic Williamsia Species.

Nahar A, Baker AL, Charleston MA, Bowman JP, Britz ML.

Genome Announc. 2017 Oct 12;5(41). pii: e01047-17. doi: 10.1128/genomeA.01047-17.

2.

Draft Genome Sequences of Three Sub-Antarctic Rhodococcus spp., Including Two Novel Psychrophilic Genomospecies.

Nahar A, Baker AL, Charleston MA, Bowman JP, Britz ML.

Genome Announc. 2017 Sep 7;5(36). pii: e00898-17. doi: 10.1128/genomeA.00898-17.

3.

Collective foraging in spatially complex nutritional environments.

Lihoreau M, Charleston MA, Senior AM, Clissold FJ, Raubenheimer D, Simpson SJ, Buhl J.

Philos Trans R Soc Lond B Biol Sci. 2017 Aug 19;372(1727). pii: 20160238. doi: 10.1098/rstb.2016.0238.

PMID:
28673915
4.

Draft Genome Sequence of Subantarctic Rhodococcus sp. Strain 1139.

Nahar A, Baker AL, Charleston MA, Britz ML.

Genome Announc. 2017 Apr 6;5(14). pii: e00090-17. doi: 10.1128/genomeA.00090-17.

5.

Biological Network Edit Distance.

McGrane M, Charleston MA.

J Comput Biol. 2016 Sep;23(9):776-88. doi: 10.1089/cmb.2016.0062. Epub 2016 Jun 16.

PMID:
27308778
6.

Australian spiny mountain crayfish and their temnocephalan ectosymbionts: an ancient association on the edge of coextinction?

Hoyal Cuthill JF, Sewell KB, Cannon LR, Charleston MA, Lawler S, Littlewood DT, Olson PD, Blair D.

Proc Biol Sci. 2016 May 25;283(1831). pii: 20160585. doi: 10.1098/rspb.2016.0585.

7.

Towards sub-quadratic time and space complexity solutions for the dated tree reconciliation problem.

Drinkwater B, Charleston MA.

Algorithms Mol Biol. 2016 May 21;11:15. doi: 10.1186/s13015-016-0077-5. eCollection 2016.

8.

Adaptive collective foraging in groups with conflicting nutritional needs.

Senior AM, Lihoreau M, Charleston MA, Buhl J, Raubenheimer D, Simpson SJ.

R Soc Open Sci. 2016 Apr 13;3(4):150638. doi: 10.1098/rsos.150638. eCollection 2016 Apr.

9.

RASCAL: A Randomized Approach for Coevolutionary Analysis.

Drinkwater B, Charleston MA.

J Comput Biol. 2016 Mar;23(3):218-27. doi: 10.1089/cmb.2015.0111. Epub 2016 Feb 1.

PMID:
26828619
10.

How to test bioinformatics software?

Kamali AH, Giannoulatou E, Chen TY, Charleston MA, McEwan AL, Ho JWK.

Biophys Rev. 2015 Sep;7(3):343-352. doi: 10.1007/s12551-015-0177-3. Epub 2015 Aug 13. Review.

11.

A time and space complexity reduction for coevolutionary analysis of trees generated under both a Yule and Uniform model.

Drinkwater B, Charleston MA.

Comput Biol Chem. 2015 Aug;57:61-71. doi: 10.1016/j.compbiolchem.2015.02.003. Epub 2015 Feb 11.

PMID:
25861917
12.

Evolving nutritional strategies in the presence of competition: a geometric agent-based model.

Senior AM, Charleston MA, Lihoreau M, Buhl J, Raubenheimer D, Simpson SJ.

PLoS Comput Biol. 2015 Mar 27;11(3):e1004111. doi: 10.1371/journal.pcbi.1004111. eCollection 2015 Mar.

13.

Nutritional ecology beyond the individual: a conceptual framework for integrating nutrition and social interactions.

Lihoreau M, Buhl J, Charleston MA, Sword GA, Raubenheimer D, Simpson SJ.

Ecol Lett. 2015 Mar;18(3):273-86. doi: 10.1111/ele.12406. Epub 2015 Jan 14. Review.

14.

Introducing TreeCollapse: a novel greedy algorithm to solve the cophylogeny reconstruction problem.

Drinkwater B, Charleston MA.

BMC Bioinformatics. 2014;15 Suppl 16:S14. doi: 10.1186/1471-2105-15-S16-S14. Epub 2014 Dec 8.

15.

Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker.

Willet CE, Haase B, Charleston MA, Wade CM.

Bioinformatics. 2015 Feb 15;31(4):599-601. doi: 10.1093/bioinformatics/btu691. Epub 2014 Oct 21.

16.

Modelling nutrition across organizational levels: from individuals to superorganisms.

Lihoreau M, Buhl J, Charleston MA, Sword GA, Raubenheimer D, Simpson SJ.

J Insect Physiol. 2014 Oct;69:2-11. doi: 10.1016/j.jinsphys.2014.03.004. Epub 2014 Mar 28.

PMID:
24681322
17.

A simple model explains the dynamics of preferential host switching among mammal RNA viruses.

Cuthill JH, Charleston MA.

Evolution. 2013 Apr;67(4):980-90. doi: 10.1111/evo.12064. Epub 2013 Feb 19.

PMID:
23550750
18.

Active subnetwork recovery with a mechanism-dependent scoring function; with application to angiogenesis and organogenesis studies.

Lichtenstein I, Charleston MA, Caetano TS, Gamble JR, Vadas MA.

BMC Bioinformatics. 2013 Feb 21;14:59. doi: 10.1186/1471-2105-14-59.

19.

Verification of phylogenetic inference programs using metamorphic testing.

Sadi MS, Kuo FC, Ho JW, Charleston MA, Chen TY.

J Bioinform Comput Biol. 2011 Dec;9(6):729-47.

PMID:
22084011
20.

Network modelling of gene regulation.

Ho JWK, Charleston MA.

Biophys Rev. 2011 Mar;3(1):1-13. doi: 10.1007/s12551-010-0041-4. Epub 2010 Dec 23.

21.

A model selection approach to discover age-dependent gene expression patterns using quantile regression models.

Ho JW, Stefani M, dos Remedios CG, Charleston MA.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S16. doi: 10.1186/1471-2164-10-S3-S16.

22.

Phylogenetic estimation with partial likelihood tensors.

Sumner JG, Charleston MA.

J Theor Biol. 2010 Feb 7;262(3):413-24. doi: 10.1016/j.jtbi.2009.09.037. Epub 2009 Oct 12.

PMID:
19822153
23.

Insights into the evolutionary history of an emerging livestock pathogen: porcine circovirus 2.

Firth C, Charleston MA, Duffy S, Shapiro B, Holmes EC.

J Virol. 2009 Dec;83(24):12813-21. doi: 10.1128/JVI.01719-09. Epub 2009 Oct 7.

24.

Modelling nutritional interactions: from individuals to communities.

Simpson SJ, Raubenheimer D, Charleston MA, Clissold FJ; ARC-NZ Vegetation Function Network Herbivory Working Group.

Trends Ecol Evol. 2010 Jan;25(1):53-60. doi: 10.1016/j.tree.2009.06.012. Epub 2009 Aug 13. Review.

PMID:
19683361
25.

On the computational complexity of the reticulate cophylogeny reconstruction problem.

Libeskind-Hadas R, Charleston MA.

J Comput Biol. 2009 Jan;16(1):105-17. doi: 10.1089/cmb.2008.0084.

PMID:
19119995
26.

Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence.

Ramsden C, Holmes EC, Charleston MA.

Mol Biol Evol. 2009 Jan;26(1):143-53. doi: 10.1093/molbev/msn234. Epub 2008 Oct 14.

PMID:
18922760
27.

Differential variability analysis of gene expression and its application to human diseases.

Ho JW, Stefani M, dos Remedios CG, Charleston MA.

Bioinformatics. 2008 Jul 1;24(13):i390-8. doi: 10.1093/bioinformatics/btn142.

28.

Markov invariants, plethysms, and phylogenetics.

Sumner JG, Charleston MA, Jermiin LS, Jarvis PD.

J Theor Biol. 2008 Aug 7;253(3):601-15. doi: 10.1016/j.jtbi.2008.04.001. Epub 2008 Apr 7.

PMID:
18513747
29.

Inferring differential leukocyte activity from antibody microarrays using a latent variable model.

Ho JW, Koundinya R, Caetano TS, dos Remedios CG, Charleston MA.

Genome Inform. 2008;21:126-37.

30.

Tracing the origin and co-phylogeny of the caliciviruses.

Etherington GJ, Ring SM, Charleston MA, Dicks J, Rayward-Smith VJ, Roberts IN.

J Gen Virol. 2006 May;87(Pt 5):1229-35.

PMID:
16603525
31.

Evolution. Is the "Big Bang" in animal evolution real?

Jermiin LS, Poladian L, Charleston MA.

Science. 2005 Dec 23;310(5756):1910-1. No abstract available.

PMID:
16373562
32.

Traversing the tangle: algorithms and applications for cophylogenetic studies.

Charleston MA, Perkins SL.

J Biomed Inform. 2006 Feb;39(1):62-71. Epub 2005 Sep 26. Review.

33.

Host switch leads to emergence of Plasmodium vivax malaria in humans.

Mu J, Joy DA, Duan J, Huang Y, Carlton J, Walker J, Barnwell J, Beerli P, Charleston MA, Pybus OG, Su XZ.

Mol Biol Evol. 2005 Aug;22(8):1686-93. Epub 2005 Apr 27.

PMID:
15858201
34.

Recent results in cophylogeny mapping.

Charleston MA.

Adv Parasitol. 2003;54:303-30. Review.

PMID:
14711089
35.

A cophylogenetic perspective of RNA-virus evolution.

Jackson AP, Charleston MA.

Mol Biol Evol. 2004 Jan;21(1):45-57. Epub 2003 Aug 29.

PMID:
12949128
36.
37.

Mathematical elegance with biochemical realism: the covarion model of molecular evolution.

Penny D, McComish BJ, Charleston MA, Hendy MD.

J Mol Evol. 2001 Dec;53(6):711-23.

PMID:
11677631
38.

The epidemic behavior of the hepatitis C virus.

Pybus OG, Charleston MA, Gupta S, Rambaut A, Holmes EC, Harvey PH.

Science. 2001 Jun 22;292(5525):2323-5.

39.
40.

Lack of evidence for cospeciation between retroelements and their hosts.

Kossida S, Harvey PH, de A Zanotto PM, Charleston MA.

J Mol Evol. 2000 Feb;50(2):194-201.

PMID:
10684353
41.

A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages.

Lockhart PJ, Steel MA, Barbrook AC, Huson DH, Charleston MA, Howe CJ.

Mol Biol Evol. 1998 Sep;15(9):1183-8.

PMID:
9729882
42.

Trees within trees: phylogeny and historical associations.

Page RD, Charleston MA.

Trends Ecol Evol. 1998 Sep 1;13(9):356-9.

PMID:
21238340
43.

Jungles: a new solution to the host/parasite phylogeny reconciliation problem.

Charleston MA.

Math Biosci. 1998 May;149(2):191-223.

PMID:
9621683
44.

Spectrum: spectral analysis of phylogenetic data.

Charleston MA.

Bioinformatics. 1998;14(1):98-9.

PMID:
9520507
45.

From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem.

Page RD, Charleston MA.

Mol Phylogenet Evol. 1997 Apr;7(2):231-40.

PMID:
9126565
47.

The effects of sequence length, tree topology, and number of taxa on the performance of phylogenetic methods.

Charleston MA, Hendy MD, Penny D.

J Comput Biol. 1994 Summer;1(2):133-51.

PMID:
8790460
48.

Neighbor-joining uses the optimal weight for net divergence.

Charleston MA, Hendy MD, Penny D.

Mol Phylogenet Evol. 1993 Mar;2(1):6-12.

PMID:
8081548

Supplemental Content

Loading ...
Support Center