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Items: 29

1.

Designing an intuitive web application for drug discovery scientists.

Karamanis N, Pignatelli M, Carvalho-Silva D, Rowland F, Cham JA, Dunham I.

Drug Discov Today. 2018 Jan 11. pii: S1359-6446(17)30423-3. doi: 10.1016/j.drudis.2018.01.032. [Epub ahead of print]

2.

3D: diversity, dynamics, differential testing - a proposed pipeline for analysis of next-generation sequencing T cell repertoire data.

Zhang L, Cham J, Paciorek A, Trager J, Sheikh N, Fong L.

BMC Bioinformatics. 2017 Feb 27;18(1):129. doi: 10.1186/s12859-017-1544-9.

3.

The Effect of Local Orientation Change on the Detection of Contours Defined by Constant Curvature: Psychophysics and Image Statistics.

Khuu SK, Cham J, Hayes A.

Front Psychol. 2017 Jan 17;7:2069. doi: 10.3389/fpsyg.2016.02069. eCollection 2016.

4.

Immune Toxicities Elicted by CTLA-4 Blockade in Cancer Patients Are Associated with Early Diversification of the T-cell Repertoire.

Oh DY, Cham J, Zhang L, Fong G, Kwek SS, Klinger M, Faham M, Fong L.

Cancer Res. 2017 Mar 15;77(6):1322-1330. doi: 10.1158/0008-5472.CAN-16-2324. Epub 2016 Dec 28.

5.

Open Targets: a platform for therapeutic target identification and validation.

Koscielny G, An P, Carvalho-Silva D, Cham JA, Fumis L, Gasparyan R, Hasan S, Karamanis N, Maguire M, Papa E, Pierleoni A, Pignatelli M, Platt T, Rowland F, Wankar P, Bento AP, Burdett T, Fabregat A, Forbes S, Gaulton A, Gonzalez CY, Hermjakob H, Hersey A, Jupe S, Kafkas Ş, Keays M, Leroy C, Lopez FJ, Magarinos MP, Malone J, McEntyre J, Munoz-Pomer Fuentes A, O'Donovan C, Papatheodorou I, Parkinson H, Palka B, Paschall J, Petryszak R, Pratanwanich N, Sarntivijal S, Saunders G, Sidiropoulos K, Smith T, Sondka Z, Stegle O, Tang YA, Turner E, Vaughan B, Vrousgou O, Watkins X, Martin MJ, Sanseau P, Vamathevan J, Birney E, Barrett J, Dunham I.

Nucleic Acids Res. 2017 Jan 4;45(D1):D985-D994. doi: 10.1093/nar/gkw1055. Epub 2016 Nov 29.

6.

Clonotypic Diversification of Intratumoral T Cells Following Sipuleucel-T Treatment in Prostate Cancer Subjects.

Sheikh N, Cham J, Zhang L, DeVries T, Letarte S, Pufnock J, Hamm D, Trager J, Fong L.

Cancer Res. 2016 Jul 1;76(13):3711-8. doi: 10.1158/0008-5472.CAN-15-3173. Epub 2016 May 23.

7.

Q&A: The academic satirist.

Cham J, Corbyn Z.

Nature. 2015 Sep 10;525(7568):186. doi: 10.1038/525186a. No abstract available.

PMID:
26354471
8.

Filshie clip migration with multiple groin hernias: a case report.

Mumme AM, Cham J.

J Med Case Rep. 2015 Sep 7;9:187. doi: 10.1186/s13256-015-0665-x.

9.

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.

Squizzato S, Park YM, Buso N, Gur T, Cowley A, Li W, Uludag M, Pundir S, Cham JA, McWilliam H, Lopez R.

Nucleic Acids Res. 2015 Jul 1;43(W1):W585-8. doi: 10.1093/nar/gkv316. Epub 2015 Apr 8.

10.

Motorized Janus metal organic framework crystals.

Tan TT, Cham JT, Reithofer MR, Hor TS, Chin JM.

Chem Commun (Camb). 2014 Dec 14;50(96):15175-8. doi: 10.1039/c4cc06952h.

PMID:
25333840
11.

Ten simple rules for running interactive workshops.

Pavelin K, Pundir S, Cham JA.

PLoS Comput Biol. 2014 Feb 27;10(2):e1003485. doi: 10.1371/journal.pcbi.1003485. eCollection 2014 Feb. No abstract available.

12.

The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics.

de Matos P, Cham JA, Cao H, Alcántara R, Rowland F, Lopez R, Steinbeck C.

BMC Bioinformatics. 2013 Mar 20;14:103. doi: 10.1186/1471-2105-14-103.

13.

The EBI enzyme portal.

Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, Kleywegt GJ, Hermjakob H, O'Donovan C, Martín MJ, Thornton JM, Steinbeck C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D773-80. doi: 10.1093/nar/gks1112. Epub 2012 Nov 21.

14.

Bioinformatics meets user-centred design: a perspective.

Pavelin K, Cham JA, de Matos P, Brooksbank C, Cameron G, Steinbeck C.

PLoS Comput Biol. 2012;8(7):e1002554. doi: 10.1371/journal.pcbi.1002554. Epub 2012 Jul 12.

15.

High-fat feeding alters the cardiovascular role of the hypothalamic paraventricular nucleus.

Chen F, Cham JL, Badoer E.

Am J Physiol Regul Integr Comp Physiol. 2010 Mar;298(3):R799-807. doi: 10.1152/ajpregu.00558.2009. Epub 2009 Dec 30.

16.

MRMaid-DB: a repository of published SRM transitions.

Cham JA, Bianco L, Barton C, Bessant C.

J Proteome Res. 2010 Jan;9(1):620-5. doi: 10.1021/pr900713u.

PMID:
19908920
17.

Role of the hypothalamic PVN in the reflex reduction in mesenteric blood flow elicited by hyperthermia.

Chen F, Dworak M, Wang Y, Cham JL, Badoer E.

Am J Physiol Regul Integr Comp Physiol. 2008 Dec;295(6):R1874-81. doi: 10.1152/ajpregu.90384.2008. Epub 2008 Oct 22.

18.

Hypothalamic paraventricular nucleus is critical for renal vasoconstriction elicited by elevations in body temperature.

Cham JL, Badoer E.

Am J Physiol Renal Physiol. 2008 Feb;294(2):F309-15. Epub 2007 Dec 12.

20.
21.

A new multi-site probe array with monolithically integrated parylene flexible cable for neural prostheses.

Pang C, Cham J, Nenadic Z, Musallam S, Tai YC, Burdick J, Andersen R.

Conf Proc IEEE Eng Med Biol Soc. 2005;7:7114-7.

PMID:
17281915
22.

Recording advances for neural prosthetics.

Andersen RA, Burdick JW, Musallam S, Scherberger H, Pesaran B, Meeker D, Corneil BD, Fineman I, Nenadic Z, Branchaud E, Cham JG, Greger B, Tai YC, Mojarradi MM.

Conf Proc IEEE Eng Med Biol Soc. 2004;7:5352-5.

PMID:
17271551
23.

Activation of spinally projecting and nitrergic neurons in the PVN following heat exposure.

Cham JL, Klein R, Owens NC, Mathai M, McKinley M, Badoer E.

Am J Physiol Regul Integr Comp Physiol. 2006 Jul;291(1):R91-101.

24.

P2X purinoceptor subtypes on paraventricular nucleus neurones projecting to the rostral ventrolateral medulla in the rat.

Cham JL, Owens NC, Barden JA, Lawrence AJ, Badoer E.

Exp Physiol. 2006 Mar;91(2):403-11. Epub 2005 Nov 18.

25.

Cognitive neural prosthetics.

Andersen RA, Burdick JW, Musallam S, Pesaran B, Cham JG.

Trends Cogn Sci. 2004 Nov;8(11):486-93.

PMID:
15491902
26.

Semi-chronic motorized microdrive and control algorithm for autonomously isolating and maintaining optimal extracellular action potentials.

Cham JG, Branchaud EA, Nenadic Z, Greger B, Andersen RA, Burdick JW.

J Neurophysiol. 2005 Jan;93(1):570-9. Epub 2004 Jun 30.

27.

[Disorders of peristalsis in adults in intensive care units].

Cham JP, Le Maout D.

Rev Infirm. 1986 Oct;36(16):30-1. French. No abstract available.

PMID:
3641364
28.

Alteration of the syncytium-forming property of XC cells by productive Moloney leukemia virus infection.

Cham JC, Vera N, Allen PT, East JL, Knesek JE.

Cancer Res. 1975 Jul;35(7):1854-7.

29.

Treatment of chronic amebiasis with oxytetracycline and tetracycline.

RUIZ SANCHEZ F, RUIZ SANCHEZ A, CHAM JL, GRANDA EN.

Antibiotic Med Clin Ther (New York). 1957 Aug;4(8):460-4. No abstract available.

PMID:
13445086

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