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Items: 18


Multiple marker abundance profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples.

Hooper CM, Stevens TJ, Saukkonen A, Castleden IR, Singh P, Mann GW, Fabre B, Ito J, Deery MJ, Lilley KS, Petzold CJ, Millar AH, Heazlewood JL, Parsons HT.

Plant J. 2017 Dec;92(6):1202-1217. doi: 10.1111/tpj.13743. Epub 2017 Nov 20.


Protein Degradation Rate in Arabidopsis thaliana Leaf Growth and Development.

Li L, Nelson CJ, Trösch J, Castleden I, Huang S, Millar AH.

Plant Cell. 2017 Feb;29(2):207-228. doi: 10.1105/tpc.16.00768. Epub 2017 Jan 30.


SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations.

Hooper CM, Castleden IR, Tanz SK, Aryamanesh N, Millar AH.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041. Epub 2016 Nov 28.


Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.

Cheng S, Gutmann B, Zhong X, Ye Y, Fisher MF, Bai F, Castleden I, Song Y, Song B, Huang J, Liu X, Xu X, Lim BL, Bond CS, Yiu SM, Small I.

Plant J. 2016 Feb;85(4):532-47. doi: 10.1111/tpj.13121.


Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL).

Hooper CM, Castleden IR, Aryamanesh N, Jacoby RP, Millar AH.

Plant Cell Physiol. 2016 Jan;57(1):e9. doi: 10.1093/pcp/pcv170. Epub 2015 Nov 9.


Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family.

Tanz SK, Castleden I, Hooper CM, Small I, Millar AH.

Front Plant Sci. 2014 Aug 12;5:396. doi: 10.3389/fpls.2014.00396. eCollection 2014.


SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome.

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH.

Bioinformatics. 2014 Dec 1;30(23):3356-64. doi: 10.1093/bioinformatics/btu550. Epub 2014 Aug 22.


Selected reaction monitoring to determine protein abundance in Arabidopsis using the Arabidopsis proteotypic predictor.

Taylor NL, Fenske R, Castleden I, Tomaz T, Nelson CJ, Millar AH.

Plant Physiol. 2014 Feb;164(2):525-36. doi: 10.1104/pp.113.225524. Epub 2013 Dec 2.


Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis.

Narsai R, Devenish J, Castleden I, Narsai K, Xu L, Shou H, Whelan J.

Plant J. 2013 Dec;76(6):1057-73. doi: 10.1111/tpj.12357. Epub 2013 Nov 29.


Fluorescent protein tagging as a tool to define the subcellular distribution of proteins in plants.

Tanz SK, Castleden I, Small ID, Millar AH.

Front Plant Sci. 2013 Jun 24;4:214. doi: 10.3389/fpls.2013.00214. eCollection 2013.


SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis.

Tanz SK, Castleden I, Hooper CM, Vacher M, Small I, Millar HA.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1185-91. doi: 10.1093/nar/gks1151. Epub 2012 Nov 24.


dREL: a relational expression language for dictionary methods.

Spadaccini N, Castleden IR, du Boulay D, Hall SR.

J Chem Inf Model. 2012 Aug 27;52(8):1917-25. doi: 10.1021/ci300076w. Epub 2012 Jul 31.


Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana.

Narsai R, Castleden I, Whelan J.

BMC Plant Biol. 2010 Nov 24;10:262. doi: 10.1186/1471-2229-10-262.


MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.

Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH, Heazlewood JL.

Plant Physiol. 2011 Jan;155(1):259-70. doi: 10.1104/pp.110.168195. Epub 2010 Nov 12.


A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.

Ito J, Taylor NL, Castleden I, Weckwerth W, Millar AH, Heazlewood JL.

Proteomics. 2009 Sep;9(17):4229-40. doi: 10.1002/pmic.200900064.


Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes.

Eubel H, Meyer EH, Taylor NL, Bussell JD, O'Toole N, Heazlewood JL, Castleden I, Small ID, Smith SM, Millar AH.

Plant Physiol. 2008 Dec;148(4):1809-29. doi: 10.1104/pp.108.129999. Epub 2008 Oct 17.


Relational expressions in STAR file dictionaries.

Spadaccini N, Hall SR, Castleden IR.

J Chem Inf Comput Sci. 2000 Nov-Dec;40(6):1289-301.


Molecular scene analysis: the integration of direct-methods and artificial-intelligence strategies for solving protein crystal structure.

Fortier S, Castleden I, Glasgow J, Conklin D, Walmsley C, Leherte L, Allen FH.

Acta Crystallogr D Biol Crystallogr. 1993 Jan 1;49(Pt 1):168-78.


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