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Items: 1 to 50 of 109

1.

Thermal restraint of a bacterial exopolysaccharide of shallow vent origin.

Caccamo MT, Zammuto V, Gugliandolo C, Madeleine-Perdrillat C, Spanò A, Magazù S.

Int J Biol Macromol. 2018 Mar 27;114:649-655. doi: 10.1016/j.ijbiomac.2018.03.160. [Epub ahead of print]

PMID:
29601879
2.

Development of a Protocol for Successful Palliative Care Consultation in Population of Patients Receiving Mechanical Circulatory Support.

Sinha S, Belcher C, Torke A, Howard J, Caccamo M, Slaven JE, Gradus-Pizlo I.

J Pain Symptom Manage. 2017 Oct;54(4):583-588. doi: 10.1016/j.jpainsymman.2017.07.021. Epub 2017 Jul 15.

PMID:
28716615
3.

Successful Delivery in a Patient With Left Ventricular Assist Device and Unplanned Pregnancy.

Makdisi G, Jan MY, Dungy-Poythress L, Wang IW, Caccamo MA.

Ann Thorac Surg. 2017 Jul;104(1):e31-e33. doi: 10.1016/j.athoracsur.2017.01.071.

PMID:
28633256
4.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.

5.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

PMID:
28447635
6.

Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom.

Basu S, Patil S, Mapleson D, Russo MT, Vitale L, Fevola C, Maumus F, Casotti R, Mock T, Caccamo M, Montresor M, Sanges R, Ferrante MI.

New Phytol. 2017 Jul;215(1):140-156. doi: 10.1111/nph.14557. Epub 2017 Apr 21.

7.

Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection.

Trinh H, Nguyen KT, Nguyen LV, Pham HQ, Huong CT, Xuan TD, Anh H, Caccamo M, Ayling S, Diep NT, Nguyen C, Trung KH, Khanh TD.

Int J Genomics. 2017;2017:9272363. doi: 10.1155/2017/9272363. Epub 2017 Feb 7.

8.

Genome sequence and genetic diversity of European ash trees.

Sollars ES, Harper AL, Kelly LJ, Sambles CM, Ramirez-Gonzalez RH, Swarbreck D, Kaithakottil G, Cooper ED, Uauy C, Havlickova L, Worswick G, Studholme DJ, Zohren J, Salmon DL, Clavijo BJ, Li Y, He Z, Fellgett A, McKinney LV, Nielsen LR, Douglas GC, Kjær ED, Downie JA, Boshier D, Lee S, Clark J, Grant M, Bancroft I, Caccamo M, Buggs RJ.

Nature. 2017 Jan 12;541(7636):212-216. doi: 10.1038/nature20786. Epub 2016 Dec 26.

PMID:
28024298
9.

Genetic architecture and evolution of the S locus supergene in Primula vulgaris.

Li J, Cocker JM, Wright J, Webster MA, McMullan M, Dyer S, Swarbreck D, Caccamo M, Oosterhout CV, Gilmartin PM.

Nat Plants. 2016 Dec 2;2(12):16188. doi: 10.1038/nplants.2016.188.

PMID:
27909301
10.

transPLANT Resources for Triticeae Genomic Data.

Spannagl M, Alaux M, Lange M, Bolser DM, Bader KC, Letellier T, Kimmel E, Flores R, Pommier C, Kerhornou A, Walts B, Nussbaumer T, Grabmuller C, Chen J, Colmsee C, Beier S, Mascher M, Schmutzer T, Arend D, Thanki A, Ramirez-Gonzalez R, Ayling M, Ayling S, Caccamo M, Mayer KF, Scholz U, Steinbach D, Quesneville H, Kersey PJ.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.06.0038.

11.

Pulse Oximeter Derived Blood Pressure Measurement in Patients With a Continuous Flow Left Ventricular Assist Device.

Hellman Y, Malik AS, Lane KA, Shen C, Wang IW, Wozniak TC, Hashmi ZA, Munson SD, Pickrell J, Caccamo MA, Gradus-Pizlo I, Hadi A.

Artif Organs. 2017 May;41(5):424-430. doi: 10.1111/aor.12790. Epub 2016 Oct 26.

PMID:
27782305
12.

Ethylene Glycol - Polyethylene Glycol (EG-PEG) Mixtures: Infrared Spectra Wavelet Cross-Correlation Analysis.

Caccamo MT, Magazù S.

Appl Spectrosc. 2017 Mar;71(3):401-409. doi: 10.1177/0003702816662882. Epub 2016 Oct 1.

PMID:
27558367
13.

CerealsDB 3.0: expansion of resources and data integration.

Wilkinson PA, Winfield MO, Barker GL, Tyrrell S, Bian X, Allen AM, Burridge A, Coghill JA, Waterfall C, Caccamo M, Davey RP, Edwards KJ.

BMC Bioinformatics. 2016 Jun 24;17:256. doi: 10.1186/s12859-016-1139-x.

14.

New generation non-stationary portable neutron generators for biophysical applications of Neutron Activation Analysis.

Marchese N, Cannuli A, Caccamo MT, Pace C.

Biochim Biophys Acta. 2017 Jan;1861(1 Pt B):3661-3670. doi: 10.1016/j.bbagen.2016.05.023. Epub 2016 May 20. Review.

PMID:
27212689
15.

gEVAL - a web-based browser for evaluating genome assemblies.

Chow W, Brugger K, Caccamo M, Sealy I, Torrance J, Howe K.

Bioinformatics. 2016 Aug 15;32(16):2508-10. doi: 10.1093/bioinformatics/btw159. Epub 2016 Apr 7.

16.

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement.

De Vega JJ, Ayling S, Hegarty M, Kudrna D, Goicoechea JL, Ergon Å, Rognli OA, Jones C, Swain M, Geurts R, Lang C, Mayer KF, Rössner S, Yates S, Webb KJ, Donnison IS, Oldroyd GE, Wing RA, Caccamo M, Powell W, Abberton MT, Skøt L.

Sci Rep. 2015 Nov 30;5:17394. doi: 10.1038/srep17394.

17.

A synteny-based draft genome sequence of the forage grass Lolium perenne.

Byrne SL, Nagy I, Pfeifer M, Armstead I, Swain S, Studer B, Mayer K, Campbell JD, Czaban A, Hentrup S, Panitz F, Bendixen C, Hedegaard J, Caccamo M, Asp T.

Plant J. 2015 Nov;84(4):816-26. doi: 10.1111/tpj.13037.

18.

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles.

Leggett RM, Heavens D, Caccamo M, Clark MD, Davey RP.

Bioinformatics. 2016 Jan 1;32(1):142-4. doi: 10.1093/bioinformatics/btv540. Epub 2015 Sep 17.

19.

The European Genome-phenome Archive of human data consented for biomedical research.

Lappalainen I, Almeida-King J, Kumanduri V, Senf A, Spalding JD, Ur-Rehman S, Saunders G, Kandasamy J, Caccamo M, Leinonen R, Vaughan B, Laurent T, Rowland F, Marin-Garcia P, Barker J, Jokinen P, Torres AC, de Argila JR, Llobet OM, Medina I, Puy MS, Alberich M, de la Torre S, Navarro A, Paschall J, Flicek P.

Nat Genet. 2015 Jul;47(7):692-5. doi: 10.1038/ng.3312. No abstract available.

20.

Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data.

Daly GM, Leggett RM, Rowe W, Stubbs S, Wilkinson M, Ramirez-Gonzalez RH, Caccamo M, Bernal W, Heeney JL.

PLoS One. 2015 Jun 22;10(6):e0129059. doi: 10.1371/journal.pone.0129059. eCollection 2015.

21.

Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes.

Garbus I, Romero JR, Valarik M, Vanžurová H, Karafiátová M, Cáccamo M, Doležel J, Tranquilli G, Helguera M, Echenique V.

BMC Genomics. 2015 May 12;16:375. doi: 10.1186/s12864-015-1579-0.

22.

B-Type Natriuretic Peptide Levels Predict Ventricular Arrhythmia Post Left Ventricular Assist Device Implantation.

Hellman Y, Malik AS, Lin H, Shen C, Wang IW, Wozniak TC, Hashmi ZA, Pickrell J, Jani M, Caccamo MA, Gradus-Pizlo I, Hadi A.

Artif Organs. 2015 Dec;39(12):1051-5. doi: 10.1111/aor.12486. Epub 2015 Apr 10.

PMID:
25864448
23.

New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.

Helguera M, Rivarola M, Clavijo B, Martis MM, Vanzetti LS, González S, Garbus I, Leroy P, Šimková H, Valárik M, Caccamo M, Doležel J, Mayer KFX, Feuillet C, Tranquilli G, Paniego N, Echenique V.

Plant Sci. 2015 Apr;233:200-212. doi: 10.1016/j.plantsci.2014.12.004. Epub 2014 Dec 18.

24.

PolyMarker: A fast polyploid primer design pipeline.

Ramirez-Gonzalez RH, Uauy C, Caccamo M.

Bioinformatics. 2015 Jun 15;31(12):2038-9. doi: 10.1093/bioinformatics/btv069. Epub 2015 Feb 2.

25.

A cross-sectional observational study of pneumococcal carriage in children, their parents, and older adults following the introduction of the 7-valent pneumococcal conjugate vaccine.

Hamaluba M, Kandasamy R, Ndimah S, Morton R, Caccamo M, Robinson H, Kelly S, Field A, Norman L, Plested E, Thompson BA, Zafar A, Kerridge SA, Lazarus R, John T, Holmes J, Fenlon SN, Gould KA, Waight P, Hinds J, Crook D, Snape MD, Pollard AJ.

Medicine (Baltimore). 2015 Jan;94(1):e335. doi: 10.1097/MD.0000000000000335.

26.

B-type natriuretic peptide-guided therapy and length of hospital stay post left ventricular assist device implantation.

Hellman Y, Malik AS, Lin H, Shen C, Wang IW, Wozniak TC, Hashmi ZA, Shaukat A, Pickrell J, Caccamo MA, Gradus-Pizlo I, Hadi A.

ASAIO J. 2015 Mar-Apr;61(2):156-60. doi: 10.1097/MAT.0000000000000182.

PMID:
25485560
27.

RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat.

Ramirez-Gonzalez RH, Segovia V, Bird N, Fenwick P, Holdgate S, Berry S, Jack P, Caccamo M, Uauy C.

Plant Biotechnol J. 2015 Jun;13(5):613-24. doi: 10.1111/pbi.12281. Epub 2014 Nov 8.

28.

Reducing heart failure readmission rates with an emergency department early readmission alert.

Hadi A, Hellman Y, Malik AS, Caccamo M, Gradus-Pizlo I, Kingery J.

Am J Med. 2014 Nov;127(11):1060-2. doi: 10.1016/j.amjmed.2014.07.025. Epub 2014 Aug 12. No abstract available.

PMID:
25107384
29.

Association of total mixed ration particle fractions retained on the Penn State Particle Separator with milk, fat, and protein yield lactation curves at the cow level.

Caccamo M, Ferguson JD, Veerkamp RF, Schadt I, Petriglieri R, Azzaro G, Pozzebon A, Licitra G.

J Dairy Sci. 2014;97(4):2502-11. doi: 10.3168/jds.2012-6490. Epub 2014 Jan 31.

PMID:
24485675
30.

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries.

Leggett RM, Clavijo BJ, Clissold L, Clark MD, Caccamo M.

Bioinformatics. 2014 Feb 15;30(4):566-8. doi: 10.1093/bioinformatics/btt702. Epub 2013 Dec 2.

31.

Effect of Sicilian pasture feeding management on content of α-tocopherol and β-carotene in cow milk.

Marino VM, Schadt I, Carpino S, Caccamo M, La Terra S, Guardiano C, Licitra G.

J Dairy Sci. 2014;97(1):543-51. doi: 10.3168/jds.2013-7005. Epub 2013 Nov 7.

PMID:
24210484
32.

Turning over a new leaf in plant genomics.

Caccamo M, Grotewold E.

Genome Biol. 2013 Jun 27;14(6):403. doi: 10.1186/gb-2013-14-6-403. No abstract available.

33.

The zebrafish reference genome sequence and its relationship to the human genome.

Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, Barrett JC, Koch R, Rauch GJ, White S, Chow W, Kilian B, Quintais LT, Guerra-Assunção JA, Zhou Y, Gu Y, Yen J, Vogel JH, Eyre T, Redmond S, Banerjee R, Chi J, Fu B, Langley E, Maguire SF, Laird GK, Lloyd D, Kenyon E, Donaldson S, Sehra H, Almeida-King J, Loveland J, Trevanion S, Jones M, Quail M, Willey D, Hunt A, Burton J, Sims S, McLay K, Plumb B, Davis J, Clee C, Oliver K, Clark R, Riddle C, Elliot D, Threadgold G, Harden G, Ware D, Begum S, Mortimore B, Kerry G, Heath P, Phillimore B, Tracey A, Corby N, Dunn M, Johnson C, Wood J, Clark S, Pelan S, Griffiths G, Smith M, Glithero R, Howden P, Barker N, Lloyd C, Stevens C, Harley J, Holt K, Panagiotidis G, Lovell J, Beasley H, Henderson C, Gordon D, Auger K, Wright D, Collins J, Raisen C, Dyer L, Leung K, Robertson L, Ambridge K, Leongamornlert D, McGuire S, Gilderthorp R, Griffiths C, Manthravadi D, Nichol S, Barker G, Whitehead S, Kay M, Brown J, Murnane C, Gray E, Humphries M, Sycamore N, Barker D, Saunders D, Wallis J, Babbage A, Hammond S, Mashreghi-Mohammadi M, Barr L, Martin S, Wray P, Ellington A, Matthews N, Ellwood M, Woodmansey R, Clark G, Cooper J, Tromans A, Grafham D, Skuce C, Pandian R, Andrews R, Harrison E, Kimberley A, Garnett J, Fosker N, Hall R, Garner P, Kelly D, Bird C, Palmer S, Gehring I, Berger A, Dooley CM, Ersan-Ürün Z, Eser C, Geiger H, Geisler M, Karotki L, Kirn A, Konantz J, Konantz M, Oberländer M, Rudolph-Geiger S, Teucke M, Lanz C, Raddatz G, Osoegawa K, Zhu B, Rapp A, Widaa S, Langford C, Yang F, Schuster SC, Carter NP, Harrow J, Ning Z, Herrero J, Searle SM, Enright A, Geisler R, Plasterk RH, Lee C, Westerfield M, de Jong PJ, Zon LI, Postlethwait JH, Nüsslein-Volhard C, Hubbard TJ, Roest Crollius H, Rogers J, Stemple DL.

Nature. 2013 Apr 25;496(7446):498-503. doi: 10.1038/nature12111. Epub 2013 Apr 17. Erratum in: Nature. 2014 Jan 9;505(7482):248. Cooper, James [corrected to Cooper, James D]; Eliott, David [corrected to Elliot, David]; Mortimer, Beverly [corrected to Mortimore, Beverley]; Begum, Sharmin [added]; Lloyd, Christine [added]; Lanz, Christa [added]; Raddatz, Günter [added]; Schuster, Stephan C [added].

34.

Crowdsourcing genomic analyses of ash and ash dieback - power to the people.

Maclean D, Yoshida K, Edwards A, Crossman L, Clavijo B, Clark M, Swarbreck D, Bashton M, Chapman P, Gijzen M, Caccamo M, Downie A, Kamoun S, Saunders DG.

Gigascience. 2013 Feb 12;2(1):2. doi: 10.1186/2047-217X-2-2.

35.

Metagenomic study of the viruses of African straw-coloured fruit bats: detection of a chiropteran poxvirus and isolation of a novel adenovirus.

Baker KS, Leggett RM, Bexfield NH, Alston M, Daly G, Todd S, Tachedjian M, Holmes CE, Crameri S, Wang LF, Heeney JL, Suu-Ire R, Kellam P, Cunningham AA, Wood JL, Caccamo M, Murcia PR.

Virology. 2013 Jul 5;441(2):95-106. doi: 10.1016/j.virol.2013.03.014. Epub 2013 Apr 4.

36.

Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat.

Belova T, Zhan B, Wright J, Caccamo M, Asp T, Simková H, Kent M, Bendixen C, Panitz F, Lien S, Doležel J, Olsen OA, Sandve SR.

BMC Genomics. 2013 Apr 4;14:222. doi: 10.1186/1471-2164-14-222.

37.

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.

Leggett RM, Ramirez-Gonzalez RH, Verweij W, Kawashima CG, Iqbal Z, Jones JD, Caccamo M, Maclean D.

PLoS One. 2013;8(3):e60058. doi: 10.1371/journal.pone.0060058. Epub 2013 Mar 25.

38.

PyroClean: denoising pyrosequences from protein-coding amplicons for the recovery of interspecific and intraspecific genetic variation.

Ramirez-Gonzalez R, Yu DW, Bruce C, Heavens D, Caccamo M, Emerson BC.

PLoS One. 2013;8(3):e57615. doi: 10.1371/journal.pone.0057615. Epub 2013 Mar 1.

39.

A family of diatom-like silicon transporters in the siliceous loricate choanoflagellates.

Marron AO, Alston MJ, Heavens D, Akam M, Caccamo M, Holland PW, Walker G.

Proc Biol Sci. 2013 Feb 13;280(1756):20122543. doi: 10.1098/rspb.2012.2543. Print 2013 Apr 7.

40.

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics.

Ramirez-Gonzalez RH, Leggett RM, Waite D, Thanki A, Drou N, Caccamo M, Davey R.

Version 2. F1000Res. 2013 Nov 15 [revised 2014 Jan 1];2:248. doi: 10.12688/f1000research.2-248.v2. eCollection 2013.

41.

Analyses of pig genomes provide insight into porcine demography and evolution.

Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, Badaoui B, Beattie CW, Bendixen C, Berman D, Blecha F, Blomberg J, Bolund L, Bosse M, Botti S, Bujie Z, Bystrom M, Capitanu B, Carvalho-Silva D, Chardon P, Chen C, Cheng R, Choi SH, Chow W, Clark RC, Clee C, Crooijmans RP, Dawson HD, Dehais P, De Sapio F, Dibbits B, Drou N, Du ZQ, Eversole K, Fadista J, Fairley S, Faraut T, Faulkner GJ, Fowler KE, Fredholm M, Fritz E, Gilbert JG, Giuffra E, Gorodkin J, Griffin DK, Harrow JL, Hayward A, Howe K, Hu ZL, Humphray SJ, Hunt T, Hornshøj H, Jeon JT, Jern P, Jones M, Jurka J, Kanamori H, Kapetanovic R, Kim J, Kim JH, Kim KW, Kim TH, Larson G, Lee K, Lee KT, Leggett R, Lewin HA, Li Y, Liu W, Loveland JE, Lu Y, Lunney JK, Ma J, Madsen O, Mann K, Matthews L, McLaren S, Morozumi T, Murtaugh MP, Narayan J, Nguyen DT, Ni P, Oh SJ, Onteru S, Panitz F, Park EW, Park HS, Pascal G, Paudel Y, Perez-Enciso M, Ramirez-Gonzalez R, Reecy JM, Rodriguez-Zas S, Rohrer GA, Rund L, Sang Y, Schachtschneider K, Schraiber JG, Schwartz J, Scobie L, Scott C, Searle S, Servin B, Southey BR, Sperber G, Stadler P, Sweedler JV, Tafer H, Thomsen B, Wali R, Wang J, Wang J, White S, Xu X, Yerle M, Zhang G, Zhang J, Zhang J, Zhao S, Rogers J, Churcher C, Schook LB.

Nature. 2012 Nov 15;491(7424):393-8. doi: 10.1038/nature11622.

42.

Uncoupling of nucleotide hydrolysis and polymerization in the ParA protein superfamily disrupts DNA segregation dynamics.

Dobruk-Serkowska A, Caccamo M, Rodríguez-Castañeda F, Wu M, Bryce K, Ng I, Schumacher MA, Barillà D, Hayes F.

J Biol Chem. 2012 Dec 14;287(51):42545-53. doi: 10.1074/jbc.M112.410324. Epub 2012 Oct 23.

43.

Association of total-mixed-ration chemical composition with milk, fat, and protein yield lactation curves at the individual level.

Caccamo M, Veerkamp RF, Licitra G, Petriglieri R, La Terra F, Pozzebon A, Ferguson JD.

J Dairy Sci. 2012 Oct;95(10):6171-83. doi: 10.3168/jds.2011-4148. Epub 2012 Aug 9.

PMID:
22884348
44.

How do dairy cows chew?--particle size analysis of selected feeds with different particle length distributions and of respective ingested bolus particles.

Schadt I, Ferguson JD, Azzaro G, Petriglieri R, Caccamo M, Van Soest P, Licitra G.

J Dairy Sci. 2012 Aug;95(8):4707-20. doi: 10.3168/jds.2011-5118.

PMID:
22818484
45.

Innovative wavelet protocols in analyzing elastic incoherent neutron scattering.

Magazù S, Migliardo F, Caccamo MT.

J Phys Chem B. 2012 Aug 9;116(31):9417-23. doi: 10.1021/jp3060087. Epub 2012 Jul 27.

PMID:
22793379
46.

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs.

Murcia PR, Hughes J, Battista P, Lloyd L, Baillie GJ, Ramirez-Gonzalez RH, Ormond D, Oliver K, Elton D, Mumford JA, Caccamo M, Kellam P, Grenfell BT, Holmes EC, Wood JL.

PLoS Pathog. 2012;8(5):e1002730. doi: 10.1371/journal.ppat.1002730. Epub 2012 May 31.

47.

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments.

Ramirez-Gonzalez RH, Bonnal R, Caccamo M, Maclean D.

Source Code Biol Med. 2012 May 28;7(1):6. doi: 10.1186/1751-0473-7-6.

48.

Tissue-specific whole transcriptome sequencing in castor, directed at understanding triacylglycerol lipid biosynthetic pathways.

Brown AP, Kroon JT, Swarbreck D, Febrer M, Larson TR, Graham IA, Caccamo M, Slabas AR.

PLoS One. 2012;7(2):e30100. doi: 10.1371/journal.pone.0030100. Epub 2012 Feb 3.

49.

De novo assembly and genotyping of variants using colored de Bruijn graphs.

Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G.

Nat Genet. 2012 Jan 8;44(2):226-32. doi: 10.1038/ng.1028.

50.

A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing.

Daly GM, Bexfield N, Heaney J, Stubbs S, Mayer AP, Palser A, Kellam P, Drou N, Caccamo M, Tiley L, Alexander GJ, Bernal W, Heeney JL.

PLoS One. 2011;6(12):e28879. doi: 10.1371/journal.pone.0028879. Epub 2011 Dec 21.

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