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Items: 1 to 50 of 350

1.

Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.

Montemayor EJ, Didychuk AL, Yake AD, Sidhu GK, Brow DA, Butcher SE.

Nat Commun. 2018 May 1;9(1):1749. doi: 10.1038/s41467-018-04145-4.

2.

Intrinsically-disordered N-termini in human parechovirus 1 capsid proteins bind encapsidated RNA.

Shakeel S, Evans JD, Hazelbaker M, Kao CC, Vaughan RC, Butcher SJ.

Sci Rep. 2018 Apr 11;8(1):5820. doi: 10.1038/s41598-018-23552-7.

3.

Immunohistochemical expression of TLR-4 in temporomandibular joint dysfunction.

Almeida LE, Hresko K, Sorenson A, Butcher S, Tayebi L, Leonardi R, Loreto C, Bosio J, Camejo F, Doetzer A.

Cranio. 2018 Apr 2:1-6. doi: 10.1080/08869634.2018.1446770. [Epub ahead of print]

PMID:
29609510
4.

The life of U6 small nuclear RNA, from cradle to grave.

Didychuk AL, Butcher SE, Brow DA.

RNA. 2018 Apr;24(4):437-460. doi: 10.1261/rna.065136.117. Epub 2018 Jan 24.

PMID:
29367453
5.

Immunohistochemical analysis of IL-1 Receptor 1 in the discs of patients with temporomandibular joint dysfunction.

Almeida LE, Sorenson A, Hresko K, Butcher S, Leonardi R, Loreto C, Bosio J, Tayebi L, Doetzer A.

Cranio. 2018 Jan 12:1-6. doi: 10.1080/08869634.2017.1417765. [Epub ahead of print]

PMID:
29327658
6.

Strain-dependent neutralization reveals antigenic variation of human parechovirus 3.

Karelehto E, van der Sanden S, Geraets JA, Domanska A, van der Linden L, Hoogendoorn D, Koen G, van Eijk H, Shakeel S, Beaumont T, de Jong M, Pajkrt D, Butcher SJ, Wolthers KC.

Sci Rep. 2017 Sep 21;7(1):12075. doi: 10.1038/s41598-017-12458-5.

7.

Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.

Didychuk AL, Montemayor EJ, Carrocci TJ, DeLaitsch AT, Lucarelli SE, Westler WM, Brow DA, Hoskins AA, Butcher SE.

Nat Commun. 2017 Sep 8;8(1):497. doi: 10.1038/s41467-017-00484-w.

8.

Erratum: Genomic RNA folding mediates assembly of human parechovirus.

Shakeel S, Dykeman EC, White SJ, Ora A, Cockburn JJB, Butcher SJ, Stockley PG, Twarock R.

Nat Commun. 2017 Jul 14;8(1):83. doi: 10.1038/s41467-017-00026-4.

9.

Building bridges between cellular and molecular structural biology.

Patwardhan A, Brandt R, Butcher SJ, Collinson L, Gault D, Grünewald K, Hecksel C, Huiskonen JT, Iudin A, Jones ML, Korir PK, Koster AJ, Lagerstedt I, Lawson CL, Mastronarde D, McCormick M, Parkinson H, Rosenthal PB, Saalfeld S, Saibil HR, Sarntivijai S, Solanes Valero I, Subramaniam S, Swedlow JR, Tudose I, Winn M, Kleywegt GJ.

Elife. 2017 Jul 6;6. pii: e25835. doi: 10.7554/eLife.25835.

10.

Human picornaviruses associated with neurological diseases and their neutralization by antibodies.

Anastasina M, Domanska A, Palm K, Butcher S.

J Gen Virol. 2017 Jun;98(6):1145-1158. doi: 10.1099/jgv.0.000780. Epub 2017 Jun 20. Review.

PMID:
28631594
11.

Expression of Interleukin-1 and temporomandibular disorder: Contemporary review of the literature.

Sorenson A, Hresko K, Butcher S, Pierce S, Tramontina V, Leonardi R, Loreto C, Bosio J, Almeida LE.

Cranio. 2017 Jun 19:1-5. doi: 10.1080/08869634.2017.1342890. [Epub ahead of print]

PMID:
28629271
12.

Genomic RNA folding mediates assembly of human parechovirus.

Shakeel S, Dykeman EC, White SJ, Ora A, Cockburn JJB, Butcher SJ, Stockley PG, Twarock R.

Nat Commun. 2017 Feb 23;8(1):5. doi: 10.1038/s41467-016-0011-z. Erratum in: Nat Commun. 2017 Jul 14;8(1):83.

13.

Sex-specific chromatin landscapes in an ultra-compact chordate genome.

Navratilova P, Danks GB, Long A, Butcher S, Manak JR, Thompson EM.

Epigenetics Chromatin. 2017 Jan 17;10:3. doi: 10.1186/s13072-016-0110-4. eCollection 2017.

14.

Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.

Montemayor EJ, Didychuk AL, Liao H, Hu P, Brow DA, Butcher SE.

Acta Crystallogr D Struct Biol. 2017 Jan 1;73(Pt 1):1-8. doi: 10.1107/S2059798316018222. Epub 2017 Jan 1.

15.

k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets.

Ainsworth D, Sternberg MJE, Raczy C, Butcher SA.

Nucleic Acids Res. 2017 Feb 28;45(4):1649-1656. doi: 10.1093/nar/gkw1248.

16.

tRNA-mimicry in IRES-mediated translation and recoding.

Butcher SE, Jan E.

RNA Biol. 2016 Nov;13(11):1068-1074. Epub 2016 Aug 11. Review.

17.

Influenza virus NS1 protein binds cellular DNA to block transcription of antiviral genes.

Anastasina M, Le May N, Bugai A, Fu Y, Söderholm S, Gaelings L, Ohman T, Tynell J, Kyttänen S, Barboric M, Nyman TA, Matikainen S, Julkunen I, Butcher SJ, Egly JM, Kainov DE.

Biochim Biophys Acta. 2016 Nov;1859(11):1440-1448. doi: 10.1016/j.bbagrm.2016.09.005. Epub 2016 Sep 21.

PMID:
27664935
18.

A multi-step model for facilitated unwinding of the yeast U4/U6 RNA duplex.

Rodgers ML, Didychuk AL, Butcher SE, Brow DA, Hoskins AA.

Nucleic Acids Res. 2016 Dec 15;44(22):10912-10928. Epub 2016 Aug 2.

19.

Multiple capsid-stabilizing interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis.

Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ.

Nat Commun. 2016 Jul 20;7:11387. doi: 10.1038/ncomms11387.

20.

Stability of HIV Frameshift Site RNA Correlates with Frameshift Efficiency and Decreased Virus Infectivity.

Garcia-Miranda P, Becker JT, Benner BE, Blume A, Sherer NM, Butcher SE.

J Virol. 2016 Jul 11;90(15):6906-6917. doi: 10.1128/JVI.00149-16. Print 2016 Aug 1.

21.

A molecular classification of human mesenchymal stromal cells.

Rohart F, Mason EA, Matigian N, Mosbergen R, Korn O, Chen T, Butcher S, Patel J, Atkinson K, Khosrotehrani K, Fisk NM, Lê Cao KA, Wells CA.

PeerJ. 2016 Mar 24;4:e1845. doi: 10.7717/peerj.1845. eCollection 2016.

22.

Integrative NMR for biomolecular research.

Lee W, Cornilescu G, Dashti H, Eghbalnia HR, Tonelli M, Westler WM, Butcher SE, Henzler-Wildman KA, Markley JL.

J Biomol NMR. 2016 Apr;64(4):307-32. doi: 10.1007/s10858-016-0029-x. Epub 2016 Mar 29.

23.

Measuring the Kinetics of Molecular Association by Isothermal Titration Calorimetry.

Vander Meulen KA, Horowitz S, Trievel RC, Butcher SE.

Methods Enzymol. 2016;567:181-213. doi: 10.1016/bs.mie.2015.08.012. Epub 2015 Oct 9.

PMID:
26794355
24.

Crystal Structure of the Measles Virus Nucleoprotein Core in Complex with an N-Terminal Region of Phosphoprotein.

Guryanov SG, Liljeroos L, Kasaragod P, Kajander T, Butcher SJ.

J Virol. 2015 Dec 30;90(6):2849-57. doi: 10.1128/JVI.02865-15.

25.

The evolution of standards and data management practices in systems biology.

Stanford NJ, Wolstencroft K, Golebiewski M, Kania R, Juty N, Tomlinson C, Owen S, Butcher S, Hermjakob H, Le Novère N, Mueller W, Snoep J, Goble C.

Mol Syst Biol. 2015 Dec 23;11(12):851. doi: 10.15252/msb.20156053. No abstract available.

26.

Structural requirements for protein-catalyzed annealing of U4 and U6 RNAs during di-snRNP assembly.

Didychuk AL, Montemayor EJ, Brow DA, Butcher SE.

Nucleic Acids Res. 2016 Feb 18;44(3):1398-410. doi: 10.1093/nar/gkv1374. Epub 2015 Dec 15.

27.

Structural Analysis of Multi-Helical RNAs by NMR-SAXS/WAXS: Application to the U4/U6 di-snRNA.

Cornilescu G, Didychuk AL, Rodgers ML, Michael LA, Burke JE, Montemayor EJ, Hoskins AA, Butcher SE.

J Mol Biol. 2016 Feb 27;428(5 Pt A):777-789. doi: 10.1016/j.jmb.2015.11.026. Epub 2015 Dec 2.

28.

Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection.

Au HH, Cornilescu G, Mouzakis KD, Ren Q, Burke JE, Lee S, Butcher SE, Jan E.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):E6446-55. doi: 10.1073/pnas.1512088112. Epub 2015 Nov 9.

29.

Multimodal high-intensity interval training increases muscle function and metabolic performance in females.

Buckley S, Knapp K, Lackie A, Lewry C, Horvey K, Benko C, Trinh J, Butcher S.

Appl Physiol Nutr Metab. 2015 Nov;40(11):1157-62. doi: 10.1139/apnm-2015-0238. Epub 2015 Jul 28.

PMID:
26513008
30.

N-Methylation as a Strategy for Enhancing the Affinity and Selectivity of RNA-binding Peptides: Application to the HIV-1 Frameshift-Stimulating RNA.

Hilimire TA, Bennett RP, Stewart RA, Garcia-Miranda P, Blume A, Becker J, Sherer N, Helms ED, Butcher SE, Smith HC, Miller BL.

ACS Chem Biol. 2016 Jan 15;11(1):88-94. doi: 10.1021/acschembio.5b00682. Epub 2015 Nov 3.

31.

Do physiological measures predict selected CrossFit(®) benchmark performance?

Butcher SJ, Neyedly TJ, Horvey KJ, Benko CR.

Open Access J Sports Med. 2015 Jul 31;6:241-7. doi: 10.2147/OAJSM.S88265. eCollection 2015.

32.

Structural Basis of Human Parechovirus Neutralization by Human Monoclonal Antibodies.

Shakeel S, Westerhuis BM, Ora A, Koen G, Bakker AQ, Claassen Y, Wagner K, Beaumont T, Wolthers KC, Butcher SJ.

J Virol. 2015 Sep;89(18):9571-80. doi: 10.1128/JVI.01429-15. Epub 2015 Jul 8.

33.

Structural mechanisms of DNA binding and unwinding in bacterial RecQ helicases.

Manthei KA, Hill MC, Burke JE, Butcher SE, Keck JL.

Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4292-7. doi: 10.1073/pnas.1416746112. Epub 2015 Mar 23.

34.

Spliceosome assembly in the absence of stable U4/U6 RNA pairing.

Burke JE, Butcher SE, Brow DA.

RNA. 2015 May;21(5):923-34. doi: 10.1261/rna.048421.114. Epub 2015 Mar 11.

35.

Dynamic motions of the HIV-1 frameshift site RNA.

Mouzakis KD, Dethoff EA, Tonelli M, Al-Hashimi H, Butcher SE.

Biophys J. 2015 Feb 3;108(3):644-54. doi: 10.1016/j.bpj.2014.12.006.

36.

ESCRT-II/Vps25 constrains digit number by endosome-mediated selective modulation of FGF-SHH signaling.

Handschuh K, Feenstra J, Koss M, Ferretti E, Risolino M, Zewdu R, Sahai MA, Bénazet JD, Peng XP, Depew MJ, Quintana L, Sharpe J, Wang B, Alcorn H, Rivi R, Butcher S, Manak JR, Vaccari T, Weinstein H, Anderson KV, Lacy E, Selleri L.

Cell Rep. 2014 Oct 23;9(2):674-87. doi: 10.1016/j.celrep.2014.09.019. Epub 2014 Oct 16.

37.

A 3D cellular context for the macromolecular world.

Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ.

Nat Struct Mol Biol. 2014 Oct;21(10):841-5. doi: 10.1038/nsmb.2897. No abstract available.

38.

The South Asian genome.

Chambers JC, Abbott J, Zhang W, Turro E, Scott WR, Tan ST, Afzal U, Afaq S, Loh M, Lehne B, O'Reilly P, Gaulton KJ, Pearson RD, Li X, Lavery A, Vandrovcova J, Wass MN, Miller K, Sehmi J, Oozageer L, Kooner IK, Al-Hussaini A, Mills R, Grewal J, Panoulas V, Lewin AM, Northwood K, Wander GS, Geoghegan F, Li Y, Wang J, Aitman TJ, McCarthy MI, Scott J, Butcher S, Elliott P, Kooner JS.

PLoS One. 2014 Aug 12;9(8):e102645. doi: 10.1371/journal.pone.0102645. eCollection 2014.

39.

Adenosine triphosphatases of thermophilic archaeal double-stranded DNA viruses.

Happonen LJ, Erdmann S, Garrett RA, Butcher SJ.

Cell Biosci. 2014 Jul 23;4:37. doi: 10.1186/2045-3701-4-37. eCollection 2014. Review.

40.

Hydrophobin film structure for HFBI and HFBII and mechanism for accelerated film formation.

Magarkar A, Mele N, Abdel-Rahman N, Butcher S, Torkkeli M, Serimaa R, Paananen A, Linder M, Bunker A.

PLoS Comput Biol. 2014 Jul 31;10(7):e1003745. doi: 10.1371/journal.pcbi.1003745. eCollection 2014 Jul.

41.

Association between the intrinsically disordered protein PEX19 and PEX3.

Hattula K, Hirschberg D, Kalkkinen N, Butcher SJ, Ora A.

PLoS One. 2014 Jul 25;9(7):e103101. doi: 10.1371/journal.pone.0103101. eCollection 2014.

42.

Investigation of supraspinatus muscle architecture following concentric and eccentric training.

Kim SY, Ko JB, Farthing JP, Butcher SJ.

J Sci Med Sport. 2015 Jul;18(4):378-82. doi: 10.1016/j.jsams.2014.05.007. Epub 2014 May 27.

PMID:
24969812
43.

Structure and dynamics of the HIV-1 frameshift element RNA.

Low JT, Garcia-Miranda P, Mouzakis KD, Gorelick RJ, Butcher SE, Weeks KM.

Biochemistry. 2014 Jul 8;53(26):4282-91. doi: 10.1021/bi5004926. Epub 2014 Jun 27.

44.

Core structure of the U6 small nuclear ribonucleoprotein at 1.7-Å resolution.

Montemayor EJ, Curran EC, Liao HH, Andrews KL, Treba CN, Butcher SE, Brow DA.

Nat Struct Mol Biol. 2014 Jun;21(6):544-51. doi: 10.1038/nsmb.2832. Epub 2014 May 18.

45.

The effect of adding core stability training to a standard balance exercise program on sit to stand performance in older adults: a pilot study.

Arnold C, Lanovaz J, Oates A, Craven B, Butcher S.

J Aging Phys Act. 2015 Jan;23(1):95-102. doi: 10.1123/japa.2013-0115. Epub 2014 Jan 21.

PMID:
24451365
46.

A technique to increase protein yield in a rabbit reticulocyte lysate translation system.

Anastasina M, Terenin I, Butcher SJ, Kainov DE.

Biotechniques. 2014 Jan;56(1):36-9. doi: 10.2144/000114125.

47.

Reply to "Updated phylogenetic analysis of arenaviruses detected in boid snakes".

Hetzel U, Sironen T, Laurinmäki P, Liljeroos L, Patjas A, Henttonen H, Vaheri A, Artelt A, Kipar A, Butcher SJ, Vapalahti O, Hepojoki J.

J Virol. 2014 Jan;88(2):1401. doi: 10.1128/JVI.03044-13. No abstract available.

48.

Cardiovascular responses in older adults with total knee arthroplasty at rest and with exercise on a positive pressure treadmill.

Webber SC, Horvey KJ, Yurach Pikaluk MT, Butcher SJ.

Eur J Appl Physiol. 2014 Mar;114(3):653-62. doi: 10.1007/s00421-013-2798-1. Epub 2013 Dec 22.

PMID:
24362964
49.

Combined approaches to flexible fitting and assessment in virus capsids undergoing conformational change.

Pandurangan AP, Shakeel S, Butcher SJ, Topf M.

J Struct Biol. 2014 Mar;185(3):427-39. doi: 10.1016/j.jsb.2013.12.003. Epub 2013 Dec 12.

50.

Binding and processing of small dsRNA molecules by the class 1 RNase III protein encoded by sweet potato chlorotic stunt virus.

Weinheimer I, Boonrod K, Moser M, Wassenegger M, Krczal G, Butcher SJ, Valkonen JP.

J Gen Virol. 2014 Feb;95(Pt 2):486-95. doi: 10.1099/vir.0.058693-0. Epub 2013 Nov 1.

PMID:
24187016

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