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At the Intersection of Urbanization, Water, and Food Security: Determination of Select Contaminants of Emerging Concern in Mussels and Oysters.

Burket SR, Sapozhnikova Y, Chung SS, Brooks BW.

J Agric Food Chem. 2018 Mar 10. doi: 10.1021/acs.jafc.7b05730. [Epub ahead of print]


Measuring mental workload and physiological reactions in marine pilots: Building bridges towards redlines of performance.

Orlandi L, Brooks B.

Appl Ergon. 2018 May;69:74-92. doi: 10.1016/j.apergo.2018.01.005. Epub 2018 Jan 17.


A novel de novo CAPN5 mutation in a patient with inflammatory vitreoretinopathy, hearing loss, and developmental delay.

Velez G, Bassuk AG, Schaefer KA, Brooks B, Gakhar L, Mahajan M, Kahn P, Tsang SH, Ferguson PJ, Mahajan VB.

Cold Spring Harb Mol Case Stud. 2018 Feb 22. pii: mcs.a002519. doi: 10.1101/mcs.a002519. [Epub ahead of print]


Toward sustainable environmental quality: Identifying priority research questions for Latin America.

Furley TH, Brodeur J, Silva de Assis HC, Carriquiriborde P, Chagas KR, Corrales J, Denadai M, Fuchs J, Mascarenhas R, Miglioranza KS, Miguez Caramés DM, Navas JM, Nugegoda D, Planes E, Rodriguez-Jorquera IA, Orozco-Medina M, Boxall AB, Rudd MA, Brooks BW.

Integr Environ Assess Manag. 2018 Feb 22. doi: 10.1002/ieam.2023. [Epub ahead of print]


Identification of novel uncertainty factors and thresholds of toxicological concern for health hazard and risk assessment: Application to cleaning product ingredients.

Wang Z, Scott WC, Williams ES, Ciarlo M, DeLeo PC, Brooks BW.

Environ Int. 2018 Feb 13. pii: S0160-4120(17)31948-7. doi: 10.1016/j.envint.2018.02.011. [Epub ahead of print] Review.


Structural Modulation of Human Amylin Protofilaments by Naturally Occurring Mutations.

Tofoleanu F, Yuan Y, Pickard FC 4th, Tywoniuk B, Brooks BR, Buchete NV.

J Phys Chem B. 2018 Feb 21. doi: 10.1021/acs.jpcb.7b12083. [Epub ahead of print]


Evaluating anxiety and depression symptoms in children and adolescents with prior mild traumatic brain injury: Agreement between methods and respondents.

Plourde V, Daya H, Low TA, Barlow KM, Brooks BL.

Child Neuropsychol. 2018 Jan 30:1-16. doi: 10.1080/09297049.2018.1432585. [Epub ahead of print]


Further Investigation of the Role of ACYP2 and WFS1 Pharmacogenomic Variants in the Development of Cisplatin-Induced Ototoxicity in Testicular Cancer Patients.

Drögemöller BI, Brooks B, Critchley C, Monzon JG, Wright GEB, Liu G, Renouf DJ, Kollmannsberger CK, Bedard PL, Hayden MR, Gelmon KA, Carleton BC, Ross CJD.

Clin Cancer Res. 2018 Jan 22. doi: 10.1158/1078-0432.CCR-17-2810. [Epub ahead of print]


Investigating Effects of Sex Differences and Prior Concussions on Symptom Reporting and Cognition Among Adolescent Soccer Players.

Brooks BL, Silverberg N, Maxwell B, Mannix R, Zafonte R, Berkner PD, Iverson GL.

Am J Sports Med. 2018 Mar;46(4):961-968. doi: 10.1177/0363546517749588. Epub 2018 Jan 11.


Primary Cilium-Mediated Retinal Pigment Epithelium Maturation Is Disrupted in Ciliopathy Patient Cells.

May-Simera HL, Wan Q, Jha BS, Hartford J, Khristov V, Dejene R, Chang J, Patnaik S, Lu Q, Banerjee P, Silver J, Insinna-Kettenhofen C, Patel D, Lotfi M, Malicdan M, Hotaling N, Maminishkis A, Sridharan R, Brooks B, Miyagishima K, Gunay-Aygun M, Pal R, Westlake C, Miller S, Sharma R, Bharti K.

Cell Rep. 2018 Jan 2;22(1):189-205. doi: 10.1016/j.celrep.2017.12.038.


Differential uptake of and sensitivity to diphenhydramine in embryonic and larval zebrafish.

Kristofco LA, Haddad SP, Chambliss CK, Brooks BW.

Environ Toxicol Chem. 2017 Dec 23. doi: 10.1002/etc.4068. [Epub ahead of print]


Comparison of Additive and Polarizable Models with Explicit Treatment of Long-Range Lennard-Jones Interactions Using Alkane Simulations.

Leonard AN, Simmonett AC, Pickard FC 4th, Huang J, Venable RM, Klauda JB, Brooks BR, Pastor RW.

J Chem Theory Comput. 2018 Feb 13;14(2):948-958. doi: 10.1021/acs.jctc.7b00948. Epub 2018 Jan 9.


Best practices protocol for the evaluation of bulbar dysfunction: summary recommendations from the NEALS bulbar subcommittee symposium.

Pattee GL, Plowman EK, Brooks BR, Berry JD, Atassi N, Chapin JL, Garand K, Yunusova Y, Mcilduff CE, Young E, Costello JM, Macklin EA, Locatelli ER, Silani V, Heitzman D, Wymer J, Goutman SA, Gelinas DF, Smith R, Perry B, Nalipinski P, Stipancic K, O'Brien M, Sullivan SL, Green J; CONTRIBUTING MEMBERS OF THE NEALS BULBAR SUBCOMMITTEE.

Amyotroph Lateral Scler Frontotemporal Degener. 2018 May;19(3-4):311-312. doi: 10.1080/21678421.2017.1404109. Epub 2017 Dec 5.


A randomized controlled trial of resistance and endurance exercise in amyotrophic lateral sclerosis.

Clawson LL, Cudkowicz M, Krivickas L, Brooks BR, Sanjak M, Allred P, Atassi N, Swartz A, Steinhorn G, Uchil A, Riley KM, Yu H, Schoenfeld DA, Maragakis NJ; neals consortium.

Amyotroph Lateral Scler Frontotemporal Degener. 2018 May;19(3-4):250-258. doi: 10.1080/21678421.2017.1404108. Epub 2017 Nov 30.


Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.

Brooks B, Olm MR, Firek BA, Baker R, Thomas BC, Morowitz MJ, Banfield JF.

Nat Commun. 2017 Nov 27;8(1):1814. doi: 10.1038/s41467-017-02018-w.


Implementation of a Regional Training Program on African Swine Fever As Part of the Cooperative Biological Engagement Program across the Caucasus Region.

De Nardi M, Léger A, Stepanyan T, Khachatryan B, Karibayev T, Sytnik I, Tyulegenov S, Akhmetova A, Nychyk S, Sytiuk M, Nevolko O, Datsenko R, Chaligava T, Avaliani L, Parkadze O, Ninidze L, Kartskhia N, Napetvaridze T, Asanishvili Z, Khelaia D, Menteshashvili I, Zadayan M, Niazyan L, Mykhaylovska N, Brooks BR, Zhumabayeva G, Satabayeva S, Metreveli M, Gallagher T, Obiso R.

Front Vet Sci. 2017 Oct 26;4:164. doi: 10.3389/fvets.2017.00164. eCollection 2017.


Mapping the Drude polarizable force field onto a multipole and induced dipole model.

Huang J, Simmonett AC, Pickard FC 4th, MacKerell AD Jr, Brooks BR.

J Chem Phys. 2017 Oct 28;147(16):161702. doi: 10.1063/1.4984113.


Pharmaceuticals in water, fish and osprey nestlings in Delaware River and Bay.

Bean TG, Rattner BA, Lazarus RS, Day DD, Burket SR, Brooks BW, Haddad SP, Bowerman WW.

Environ Pollut. 2018 Jan;232:533-545. doi: 10.1016/j.envpol.2017.09.083. Epub 2017 Oct 9.


Validity of a Computerized Cognitive Battery in Children and Adolescents with Neurological Diagnoses.

Plourde V, Hrabok M, Sherman EMS, Brooks BL.

Arch Clin Neuropsychol. 2018 Mar 1;33(2):247-253. doi: 10.1093/arclin/acx067.


The Molecular Design Research Network.

Coish P, Brooks BW, Gallagher EP, Mills M, Kavanagh TJ, Simcox N, Lasker GA, Botta D, Schmuck SC, Voutchkova-Kostal A, Kostal J, Mullins ML, Nesmith SM, Mellor KE, Corrales J, Kristofco LA, Saari GN, Steele B, Shen LQ, Melnikov F, Zimmerman JB, Anastas PT.

Toxicol Sci. 2018 Feb 1;161(2):241-248. doi: 10.1093/toxsci/kfx175.


Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise.

Lee J, Zhang ZY, Lee J, Brooks BR, Ahn YY.

Sci Rep. 2017 Sep 29;7(1):12399. doi: 10.1038/s41598-017-12432-1.


Global scanning assessment of calcium channel blockers in the environment: Review and analysis of occurrence, ecotoxicology and hazards in aquatic systems.

Saari GN, Scott WC, Brooks BW.

Chemosphere. 2017 Dec;189:466-478. doi: 10.1016/j.chemosphere.2017.09.058. Epub 2017 Sep 14. Review.


Alterations of larval photo-dependent swimming responses (PDR): New endpoints for rapid and diagnostic screening of aquatic contamination.

Colón-Cruz L, Kristofco L, Crooke-Rosado J, Acevedo A, Torrado A, Brooks BW, Sosa MA, Behra M.

Ecotoxicol Environ Saf. 2018 Jan;147:670-680. doi: 10.1016/j.ecoenv.2017.09.018. Epub 2017 Sep 19.


Efficient Strategy for the Calculation of Solvation Free Energies in Water and Chloroform at the Quantum Mechanical/Molecular Mechanical Level.

Wang M, Li P, Jia X, Liu W, Shao Y, Hu W, Zheng J, Brooks BR, Mei Y.

J Chem Inf Model. 2017 Oct 23;57(10):2476-2489. doi: 10.1021/acs.jcim.7b00001. Epub 2017 Oct 2.


Global organization of a binding site network gives insight into evolution and structure-function relationships of proteins.

Lee J, Konc J, Janežič D, Brooks BR.

Sci Rep. 2017 Sep 14;7(1):11652. doi: 10.1038/s41598-017-10412-z.


The necessity of bioanalytical tools for advancing water and sediment quality assessment.

Kolodziej EP, Choi K, Marfil-Vega R, Brooks BW.

Environ Sci Process Impacts. 2017 Sep 20;19(9):1113-1116. doi: 10.1039/c7em90032e. No abstract available.


Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems.

Emerson JB, Adams RI, Román CMB, Brooks B, Coil DA, Dahlhausen K, Ganz HH, Hartmann EM, Hsu T, Justice NB, Paulino-Lima IG, Luongo JC, Lymperopoulou DS, Gomez-Silvan C, Rothschild-Mancinelli B, Balk M, Huttenhower C, Nocker A, Vaishampayan P, Rothschild LJ.

Microbiome. 2017 Aug 16;5(1):86. doi: 10.1186/s40168-017-0285-3. Review.


Changes in the use of erythropoiesis-stimulating agents (ESAs) and red blood cell transfusion in patients with cancer amidst regulatory and reimbursement changes.

Gawade PL, Berlin JA, Henry DH, Tomita D, Brooks BD, Franklin J, Bradbury BD, Critchlow CW.

Pharmacoepidemiol Drug Saf. 2017 Nov;26(11):1357-1366. doi: 10.1002/pds.4293. Epub 2017 Aug 14.


Acute exposure to an environmentally relevant concentration of diclofenac elicits oxidative stress in the culturally important galaxiid fish Galaxias maculatus.

McRae NK, Glover CN, Burket SR, Brooks BW, Gaw S.

Environ Toxicol Chem. 2018 Jan;37(1):224-235. doi: 10.1002/etc.3948. Epub 2017 Dec 4.


Machine Learning Force Field Parameters from Ab Initio Data.

Li Y, Li H, Pickard FC 4th, Narayanan B, Sen FG, Chan MKY, Sankaranarayanan SKRS, Brooks BR, Roux B.

J Chem Theory Comput. 2017 Sep 12;13(9):4492-4503. doi: 10.1021/acs.jctc.7b00521. Epub 2017 Sep 1.


Buried shallow fault slip from the South Napa earthquake revealed by near-field geodesy.

Brooks BA, Minson SE, Glennie CL, Nevitt JM, Dawson T, Rubin R, Ericksen TL, Lockner D, Hudnut K, Langenheim V, Lutz A, Mareschal M, Murray J, Schwartz D, Zaccone D.

Sci Adv. 2017 Jul 28;3(7):e1700525. doi: 10.1126/sciadv.1700525. eCollection 2017 Jul.


Genetic background-dependent role of Egr1 for eyelid development.

Oh J, Wang Y, Chen S, Li P, Du N, Yu ZX, Butcher D, Gebregiorgis T, Strachan E, Lehmann OJ, Brooks BP, Chan CC, Leonard WJ.

Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):E7131-E7139. doi: 10.1073/pnas.1705848114. Epub 2017 Aug 4.


Neuropsychological Outcome in Perinatal Stroke Associated With Epileptiform Discharges in Sleep.

Mineyko A, Qi W, Carlson HL, Bello-Espinosa L, Brooks BL, Kirton A.

Can J Neurol Sci. 2017 Jul;44(4):358-365. doi: 10.1017/cjn.2017.29.


OpenMM 7: Rapid development of high performance algorithms for molecular dynamics.

Eastman P, Swails J, Chodera JD, McGibbon RT, Zhao Y, Beauchamp KA, Wang LP, Simmonett AC, Harrigan MP, Stern CD, Wiewiora RP, Brooks BR, Pande VS.

PLoS Comput Biol. 2017 Jul 26;13(7):e1005659. doi: 10.1371/journal.pcbi.1005659. eCollection 2017 Jul.


A novel iris transillumination grading scale allowing flexible assessment with quantitative image analysis and visual matching.

Wang C, Brancusi F, Valivullah ZM, Anderson MG, Cunningham D, Hedberg-Buenz A, Power B, Simeonov D, Gahl WA, Zein WM, Adams DR, Brooks B.

Ophthalmic Genet. 2018 Jan-Feb;39(1):41-45. doi: 10.1080/13816810.2017.1342134. Epub 2017 Jul 25.


dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication.

Olm MR, Brown CT, Brooks B, Banfield JF.

ISME J. 2017 Dec;11(12):2864-2868. doi: 10.1038/ismej.2017.126. Epub 2017 Jul 25.


Ototoxicity monitoring in children treated with platinum chemotherapy.

Brooks B, Knight K.

Int J Audiol. 2017 Jul 24:1-7. doi: 10.1080/14992027.2017.1355570. [Epub ahead of print]


Advancing Concussion Assessment in Pediatrics (A-CAP): a prospective, concurrent cohort, longitudinal study of mild traumatic brain injury in children: protocol study.

Yeates KO, Beauchamp M, Craig W, Doan Q, Zemek R, Bjornson B, Gravel J, Mikrogianakis A, Goodyear B, Abdeen N, Beaulieu C, Dehaes M, Deschenes S, Harris A, Lebel C, Lamont R, Williamson T, Barlow KM, Bernier F, Brooks BL, Emery C, Freedman SB, Kowalski K, Mrklas K, Tomfohr-Madsen L, Schneider KJ; Pediatric Emergency Research Canada (PERC).

BMJ Open. 2017 Jul 13;7(7):e017012. doi: 10.1136/bmjopen-2017-017012.


In Vitro Modeling Using Ciliopathy-Patient-Derived Cells Reveals Distinct Cilia Dysfunctions Caused by CEP290 Mutations.

Shimada H, Lu Q, Insinna-Kettenhofen C, Nagashima K, English MA, Semler EM, Mahgerefteh J, Cideciyan AV, Li T, Brooks BP, Gunay-Aygun M, Jacobson SG, Cogliati T, Westlake CJ, Swaroop A.

Cell Rep. 2017 Jul 11;20(2):384-396. doi: 10.1016/j.celrep.2017.06.045.


Global sensing of the antigenic structure of herpes simplex virus gD using high-throughput array-based SPR imaging.

Cairns TM, Ditto NT, Lou H, Brooks BD, Atanasiu D, Eisenberg RJ, Cohen GH.

PLoS Pathog. 2017 Jun 14;13(6):e1006430. doi: 10.1371/journal.ppat.1006430. eCollection 2017 Jun.


Prediction of specific depressive symptom clusters in youth with epilepsy: The NDDI-E-Y versus Neuro-QOL SF.

Kellermann TS, Mueller M, Carter EG, Brooks B, Smith G, Kopp OJ, Wagner JL.

Epilepsia. 2017 Aug;58(8):1370-1379. doi: 10.1111/epi.13808. Epub 2017 Jun 9.


Manipulating cognitive reserve: Pre-injury environmental conditions influence the severity of concussion symptomology, gene expression, and response to melatonin treatment in rats.

Yamakawa GR, Salberg S, Barlow KM, Brooks BL, Esser MJ, Yeates KO, Mychasiuk R.

Exp Neurol. 2017 Sep;295:55-65. doi: 10.1016/j.expneurol.2017.06.001. Epub 2017 Jun 1.


A role for primary cilia in aortic valve development and disease.

Toomer KA, Fulmer D, Guo L, Drohan A, Peterson N, Swanson P, Brooks B, Mukherjee R, Body S, Lipschutz JH, Wessels A, Norris RA.

Dev Dyn. 2017 Aug;246(8):625-634. doi: 10.1002/dvdy.24524. Epub 2017 Jun 28.


Finding multiple reaction pathways via global optimization of action.

Lee J, Lee IH, Joung I, Lee J, Brooks BR.

Nat Commun. 2017 May 26;8:15443. doi: 10.1038/ncomms15443.


Neuropsychological phenotypes of 76 individuals with Joubert syndrome evaluated at a single center.

Summers AC, Snow J, Wiggs E, Liu AG, Toro C, Poretti A, Zein WM, Brooks BP, Parisi MA, Inati S, Doherty D, Vemulapalli M, Mullikin JC; NISC Comparative Sequencing Program, Vilboux T, Gahl WA, Gunay-Aygun M.

Am J Med Genet A. 2017 May 12. doi: 10.1002/ajmg.a.38272. [Epub ahead of print]


Six-Minute Walk Test as a Measure of Walking Capacity in Ambulatory Individuals With Amyotrophic Lateral Sclerosis.

Sanjak M, Langford V, Holsten S, Rozario N, Patterson CGM, Bravver E, Bockenek WL, Brooks BR.

Arch Phys Med Rehabil. 2017 Nov;98(11):2301-2307. doi: 10.1016/j.apmr.2017.04.004. Epub 2017 Apr 30.


Association Between SLC16A5 Genetic Variation and Cisplatin-Induced Ototoxic Effects in Adult Patients With Testicular Cancer.

Drögemöller BI, Monzon JG, Bhavsar AP, Borrie AE, Brooks B, Wright GEB, Liu G, Renouf DJ, Kollmannsberger CK, Bedard PL, Aminkeng F, Amstutz U, Hildebrand CA, Gunaretnam EP, Critchley C, Chen Z, Brunham LR, Hayden MR, Ross CJD, Gelmon KA, Carleton BC.

JAMA Oncol. 2017 Nov 1;3(11):1558-1562. doi: 10.1001/jamaoncol.2017.0502.


Baseline cognitive test performance and concussion-like symptoms among adolescent athletes with ADHD: examining differences based on medication use.

Cook NE, Huang DS, Silverberg ND, Brooks BL, Maxwell B, Zafonte R, Berkner PD, Iverson GL.

Clin Neuropsychol. 2017 Nov;31(8):1341-1352. doi: 10.1080/13854046.2017.1317031. Epub 2017 Apr 21.


In some places, in some cases, and at some times, harmful algal blooms are the greatest threat to inland water quality.

Brooks BW, Lazorchak JM, Howard MDA, Johnson MV, Morton SL, Perkins DAK, Reavie ED, Scott GI, Smith SA, Steevens JA.

Environ Toxicol Chem. 2017 May;36(5):1125-1127. doi: 10.1002/etc.3801. No abstract available.


Interpreting Patterns of Low Scores on the NIH Toolbox Cognition Battery.

Holdnack JA, Tulsky DS, Brooks BL, Slotkin J, Gershon R, Heinemann AW, Iverson GL.

Arch Clin Neuropsychol. 2017 Aug 1;32(5):574-584. doi: 10.1093/arclin/acx032.


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