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Items: 1 to 50 of 284

1.

Developing novel methods for protein, peptide and metabolite analysis.

Bischoff R.

Bioanalysis. 2018 Apr 10. doi: 10.4155/bio-2018-3999. [Epub ahead of print]

PMID:
29633863
2.

Assessment of Sample Preparation Bias in Mass Spectrometry-Based Proteomics.

Klont F, Bras L, Wolters JC, Ongay S, Bischoff R, Halmos GB, Horvatovich P.

Anal Chem. 2018 Apr 17;90(8):5405-5413. doi: 10.1021/acs.analchem.8b00600. Epub 2018 Apr 6.

PMID:
29608294
3.

A fully validated liquid chromatography-mass spectrometry method for the quantification of the soluble receptor of advanced glycation end-products (sRAGE) in serum using immunopurification in a 96-well plate format.

Klont F, Pouwels SD, Hermans J, van de Merbel NC, Horvatovich P, Ten Hacken NHT, Bischoff R.

Talanta. 2018 May 15;182:414-421. doi: 10.1016/j.talanta.2018.02.015. Epub 2018 Feb 7.

4.

Global Proofing a Collaborative Care Telemental Health Intervention in Brazil.

Springer PR, Scheeren P, Bischoff RJ, Taylor NC, Cargnin D, Barros E, Falceto OG.

Fam Syst Health. 2018 Feb 1. doi: 10.1037/fsh0000323. [Epub ahead of print]

PMID:
29389147
5.

Cleavable Crosslinkers as Tissue Fixation Reagents for Proteomic Analysis.

Ongay S, Langelaar-Makkinje M, Stoop MP, Liu N, Overkleeft H, Luider TM, Groothuis GMM, Bischoff R.

Chembiochem. 2018 Apr 4;19(7):736-743. doi: 10.1002/cbic.201700625. Epub 2018 Feb 16.

PMID:
29356267
6.

Tutorial: Correction of shifts in single-stage LC-MS(/MS) data.

Mitra V, Smilde AK, Bischoff R, Horvatovich P.

Anal Chim Acta. 2018 Jan 25;999:37-53. doi: 10.1016/j.aca.2017.09.039. Epub 2017 Nov 2. Review.

7.

Running-wheel activity delays mitochondrial respiratory flux decline in aging mouse muscle via a post-transcriptional mechanism.

Stolle S, Ciapaite J, Reijne AC, Talarovicova A, Wolters JC, Aguirre-Gamboa R, van der Vlies P, de Lange K, Neerincx PB, van der Vries G, Deelen P, Swertz MA, Li Y, Bischoff R, Permentier HP, Horvatovitch PL, Groen AK, van Dijk G, Reijngoud DJ, Bakker BM.

Aging Cell. 2018 Feb;17(1). doi: 10.1111/acel.12700. Epub 2017 Nov 9.

8.

Accumulation of 5-oxoproline in myocardial dysfunction and the protective effects of OPLAH.

van der Pol A, Gil A, Silljé HHW, Tromp J, Ovchinnikova ES, Vreeswijk-Baudoin I, Hoes M, Domian IJ, van de Sluis B, van Deursen JM, Voors AA, van Veldhuisen DJ, van Gilst WH, Berezikov E, van der Harst P, de Boer RA, Bischoff R, van der Meer P.

Sci Transl Med. 2017 Nov 8;9(415). pii: eaam8574. doi: 10.1126/scitranslmed.aam8574.

PMID:
29118264
9.

Comparison of Targeted Mass Spectrometry Techniques with an Immunoassay: A Case Study for HSP90α.

Güzel C, Govorukhina NI, Stingl C, Dekker LJM, Boichenko A, van der Zee AGJ, Bischoff RPH, Luider TM.

Proteomics Clin Appl. 2018 Jan;12(1). doi: 10.1002/prca.201700107. Epub 2017 Oct 30.

PMID:
28975736
10.

Physicochemical Parameters Affecting the Electrospray Ionization Efficiency of Amino Acids after Acylation.

Hermans J, Ongay S, Markov V, Bischoff R.

Anal Chem. 2017 Sep 5;89(17):9159-9166. doi: 10.1021/acs.analchem.7b01899. Epub 2017 Aug 16.

11.

Targeting transcription factor lysine acetylation in inflammatory airway diseases.

van den Bosch T, Kwiatkowski M, Bischoff R, Dekker FJ.

Epigenomics. 2017 Jul;9(7):1013-1028. doi: 10.2217/epi-2017-0027. Epub 2017 Jun 15. Review.

12.

Specific Affinity Enrichment of Electrochemically Cleaved Peptides Based on Cu(II)-Mediated Spirolactone Tagging.

Zhang T, de Vries MP, Permentier HP, Bischoff R.

Anal Chem. 2017 Jul 5;89(13):7123-7129. doi: 10.1021/acs.analchem.7b01039. Epub 2017 Jun 19.

13.

The relevance of Ki calculation for bi-substrate enzymes illustrated by kinetic evaluation of a novel lysine (K) acetyltransferase 8 inhibitor.

Wapenaar H, van den Bosch T, Leus NGJ, van der Wouden PE, Eleftheriadis N, Hermans J, Hailu GS, Rotili D, Mai A, Dömling A, Bischoff R, Haisma HJ, Dekker FJ.

Eur J Med Chem. 2017 Aug 18;136:480-486. doi: 10.1016/j.ejmech.2017.05.015. Epub 2017 May 5.

PMID:
28527406
14.

Assuring Consistent Performance of an Insulin-Like Growth Factor 1 MALDImmunoassay by Monitoring Measurement Quality Indicators.

Klont F, Ten Hacken NHT, Horvatovich P, Bakker SJL, Bischoff R.

Anal Chem. 2017 Jun 6;89(11):6188-6195. doi: 10.1021/acs.analchem.7b01125. Epub 2017 May 10.

15.

HDAC1-3 inhibitor MS-275 enhances IL10 expression in RAW264.7 macrophages and reduces cigarette smoke-induced airway inflammation in mice.

Leus NG, van den Bosch T, van der Wouden PE, Krist K, Ourailidou ME, Eleftheriadis N, Kistemaker LE, Bos S, Gjaltema RA, Mekonnen SA, Bischoff R, Gosens R, Haisma HJ, Dekker FJ.

Sci Rep. 2017 Mar 27;7:45047. doi: 10.1038/srep45047.

16.

A 6-alkylsalicylate histone acetyltransferase inhibitor inhibits histone acetylation and pro-inflammatory gene expression in murine precision-cut lung slices.

van den Bosch T, Leus NGJ, Wapenaar H, Boichenko A, Hermans J, Bischoff R, Haisma HJ, Dekker FJ.

Pulm Pharmacol Ther. 2017 Jun;44:88-95. doi: 10.1016/j.pupt.2017.03.006. Epub 2017 Mar 16.

PMID:
28323055
17.

Bioconjugation strategies to couple supramolecular exo-functionalized palladium cages to peptides for biomedical applications.

Han J, Schmidt A, Zhang T, Permentier H, Groothuis GM, Bischoff R, Kühn FE, Horvatovich P, Casini A.

Chem Commun (Camb). 2017 Jan 24;53(8):1405-1408. doi: 10.1039/c6cc08937b.

PMID:
28079225
18.

Relationship between plasma and salivary melatonin and cortisol investigated by LC-MS/MS.

van Faassen M, Bischoff R, Kema IP.

Clin Chem Lab Med. 2017 Aug 28;55(9):1340-1348. doi: 10.1515/cclm-2016-0817.

PMID:
27997348
19.

The degradation of nucleotide triphosphates extracted under boiling ethanol conditions is prevented by the yeast cellular matrix.

Gil A, Siegel D, Bonsing-Vedelaar S, Permentier H, Reijngoud DJ, Dekker F, Bischoff R.

Metabolomics. 2017;13(1):1. Epub 2016 Nov 28.

20.

Global Mental Health in Action: Reducing Disparities One Community at a Time.

Bischoff RJ, Springer PR, Taylor N.

J Marital Fam Ther. 2017 Apr;43(2):276-290. doi: 10.1111/jmft.12202. Epub 2016 Nov 17. Review.

PMID:
27859402
21.

Activity-Dependent Photoaffinity Labeling of Metalloproteases.

Prely L, Klein T, Geurink PP, Paal K, Overkleeft HS, Bischoff R.

Methods Mol Biol. 2017;1491:103-111.

PMID:
27778284
22.

Serum Protein Markers for the Early Detection of Lung Cancer: A Focus on Autoantibodies.

Broodman I, Lindemans J, van Sten J, Bischoff R, Luider T.

J Proteome Res. 2017 Jan 6;16(1):3-13. doi: 10.1021/acs.jproteome.6b00559. Epub 2016 Nov 2. Review.

PMID:
27769114
23.

Proteogenomics: Key Driver for Clinical Discovery and Personalized Medicine.

Barbieri R, Guryev V, Brandsma CA, Suits F, Bischoff R, Horvatovich P.

Adv Exp Med Biol. 2016;926:21-47. Review.

PMID:
27686804
24.

Radiation chemical studies of Gly-Met-Gly in aqueous solution.

Barata-Vallejo S, Ferreri C, Zhang T, Permentier H, Bischoff R, Bobrowski K, Chatgilialoglu C.

Free Radic Res. 2016 Nov;50(sup1):S24-S39. Epub 2016 Oct 25.

PMID:
27592721
25.

Electrochemical Protein Cleavage in a Microfluidic Cell with Integrated Boron Doped Diamond Electrodes.

van den Brink FT, Zhang T, Ma L, Bomer J, Odijk M, Olthuis W, Permentier HP, Bischoff R, van den Berg A.

Anal Chem. 2016 Sep 20;88(18):9190-8. doi: 10.1021/acs.analchem.6b02413. Epub 2016 Aug 26.

PMID:
27563730
26.

Translational Targeted Proteomics Profiling of Mitochondrial Energy Metabolic Pathways in Mouse and Human Samples.

Wolters JC, Ciapaite J, van Eunen K, Niezen-Koning KE, Matton A, Porte RJ, Horvatovich P, Bakker BM, Bischoff R, Permentier HP.

J Proteome Res. 2016 Sep 2;15(9):3204-13. doi: 10.1021/acs.jproteome.6b00419. Epub 2016 Aug 5.

PMID:
27447838
27.

Malnutrition-associated liver steatosis and ATP depletion is caused by peroxisomal and mitochondrial dysfunction.

van Zutphen T, Ciapaite J, Bloks VW, Ackereley C, Gerding A, Jurdzinski A, de Moraes RA, Zhang L, Wolters JC, Bischoff R, Wanders RJ, Houten SM, Bronte-Tinkew D, Shatseva T, Lewis GF, Groen AK, Reijngoud DJ, Bakker BM, Jonker JW, Kim PK, Bandsma RH.

J Hepatol. 2016 Dec;65(6):1198-1208. doi: 10.1016/j.jhep.2016.05.046. Epub 2016 Jun 14.

28.

Quantitative antibody-free LC-MS/MS analysis of sTRAIL in sputum and saliva at the sub-ng/mL level.

Wilffert D, Donzelli R, Asselman A, Hermans J, Govorukhina N, Ten Hacken NH, Quax WJ, van de Merbel NC, Bischoff R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2016 Oct 1;1032:205-210. doi: 10.1016/j.jchromb.2016.04.041. Epub 2016 Apr 26.

PMID:
27250581
29.

Efficient and Selective Chemical Labeling of Electrochemically Generated Peptides Based on Spirolactone Chemistry.

Zhang T, Niu X, Yuan T, Tessari M, de Vries MP, Permentier HP, Bischoff R.

Anal Chem. 2016 Jun 21;88(12):6465-71. doi: 10.1021/acs.analchem.6b01154. Epub 2016 Jun 10.

PMID:
27247048
30.

Highly sensitive antibody-free μLC-MS/MS quantification of rhTRAIL in serum.

Wilffert D, Asselman A, Donzelli R, Hermans J, Govorukhina N, Quax WJ, van de Merbel NC, Bischoff R.

Bioanalysis. 2016 May;8(9):881-90. doi: 10.4155/bio.16.30. Epub 2016 Apr 13.

PMID:
27072193
31.

HDAC 3-selective inhibitor RGFP966 demonstrates anti-inflammatory properties in RAW 264.7 macrophages and mouse precision-cut lung slices by attenuating NF-κB p65 transcriptional activity.

Leus NG, van der Wouden PE, van den Bosch T, Hooghiemstra WT, Ourailidou ME, Kistemaker LE, Bischoff R, Gosens R, Haisma HJ, Dekker FJ.

Biochem Pharmacol. 2016 May 15;108:58-74. doi: 10.1016/j.bcp.2016.03.010. Epub 2016 Mar 16.

32.

Microbial Flavoprotein Monooxygenases as Mimics of Mammalian Flavin-Containing Monooxygenases for the Enantioselective Preparation of Drug Metabolites.

Gul T, Krzek M, Permentier HP, Fraaije MW, Bischoff R.

Drug Metab Dispos. 2016 Aug;44(8):1270-6. doi: 10.1124/dmd.115.069104. Epub 2016 Mar 16.

33.

Site-specific quantification of lysine acetylation in the N-terminal tail of histone H4 using a double-labelling, targeted UHPLC MS/MS approach.

D'Urzo A, Boichenko AP, van den Bosch T, Hermans J, Dekker F, Andrisano V, Bischoff R.

Anal Bioanal Chem. 2016 May;408(13):3547-53. doi: 10.1007/s00216-016-9431-1. Epub 2016 Mar 11.

34.

Identification of Analytical Factors Affecting Complex Proteomics Profiles Acquired in a Factorial Design Study with Analysis of Variance: Simultaneous Component Analysis.

Mitra V, Govorukhina N, Zwanenburg G, Hoefsloot H, Westra I, Smilde A, Reijmers T, van der Zee AG, Suits F, Bischoff R, Horvatovich P.

Anal Chem. 2016 Apr 19;88(8):4229-38. doi: 10.1021/acs.analchem.5b03483. Epub 2016 Mar 28.

PMID:
26959230
35.

Free Urinary Desmosine and Isodesmosine as COPD Biomarkers: The Relevance of Confounding Factors.

Ongay S, Sikma M, Horvatovich P, Hermans J, Miller BE, Ten Hacken NHT, Bischoff R.

Chronic Obstr Pulm Dis. 2016 Mar 1;3(2):560-569. doi: 10.15326/jcopdf.3.2.2015.0159.

36.

Comparative investigation of the mutagenicity of propenylic and allylic asarone isomers in the Ames fluctuation assay.

Berg K, Bischoff R, Stegmüller S, Cartus A, Schrenk D.

Mutagenesis. 2016 Jul;31(4):443-51. doi: 10.1093/mutage/gew007. Epub 2016 Feb 19.

PMID:
26895844
37.

The histone acetyltransferase p300 inhibitor C646 reduces pro-inflammatory gene expression and inhibits histone deacetylases.

van den Bosch T, Boichenko A, Leus NGJ, Ourailidou ME, Wapenaar H, Rotili D, Mai A, Imhof A, Bischoff R, Haisma HJ, Dekker FJ.

Biochem Pharmacol. 2016 Feb 15;102:130-140. doi: 10.1016/j.bcp.2015.12.010. Epub 2015 Dec 21.

38.

LC-MS/MS-Based Monitoring of In Vivo Protein Biotransformation: Quantitative Determination of Trastuzumab and Its Deamidation Products in Human Plasma.

Bults P, Bischoff R, Bakker H, Gietema JA, van de Merbel NC.

Anal Chem. 2016 Feb 2;88(3):1871-7. doi: 10.1021/acs.analchem.5b04276. Epub 2016 Jan 8.

PMID:
26713683
39.

Covalent immobilization of a flavoprotein monooxygenase via its flavin cofactor.

Krzek M, van Beek HL, Permentier HP, Bischoff R, Fraaije MW.

Enzyme Microb Technol. 2016 Jan;82:138-143. doi: 10.1016/j.enzmictec.2015.09.006. Epub 2015 Sep 30.

PMID:
26672460
40.

Protein biogenesis machinery is a driver of replicative aging in yeast.

Janssens GE, Meinema AC, González J, Wolters JC, Schmidt A, Guryev V, Bischoff R, Wit EC, Veenhoff LM, Heinemann M.

Elife. 2015 Dec 1;4:e08527. doi: 10.7554/eLife.08527.

41.

Genomic variability and protein species - Improving sequence coverage for proteogenomics.

Bischoff R, Permentier H, Guryev V, Horvatovich P.

J Proteomics. 2016 Feb 16;134:25-36. doi: 10.1016/j.jprot.2015.09.021. Epub 2015 Sep 21. Review.

PMID:
26394375
42.

ADAM10 mediates the house dust mite-induced release of chemokine ligand CCL20 by airway epithelium.

Post S, Rozeveld D, Jonker MR, Bischoff R, van Oosterhout AJ, Heijink IH.

Allergy. 2015 Dec;70(12):1545-52. doi: 10.1111/all.12730. Epub 2015 Sep 11.

PMID:
26296735
43.

In Vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins.

Horvatovich P, Végvári Á, Saul J, Park JG, Qiu J, Syring M, Pirrotte P, Petritis K, Tegeler TJ, Aziz M, Fuentes M, Diez P, Gonzalez-Gonzalez M, Ibarrola N, Droste C, De Las Rivas J, Gil C, Clemente F, Hernaez ML, Corrales FJ, Nilsson CL, Berven FS, Bischoff R, Fehniger TE, LaBaer J, Marko-Varga G.

J Proteome Res. 2015 Sep 4;14(9):3441-51. doi: 10.1021/acs.jproteome.5b00486. Epub 2015 Jul 28.

PMID:
26155874
44.

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.

Horvatovich P, Lundberg EK, Chen YJ, Sung TY, He F, Nice EC, Goode RJ, Yu S, Ranganathan S, Baker MS, Domont GB, Velasquez E, Li D, Liu S, Wang Q, He QY, Menon R, Guan Y, Corrales FJ, Segura V, Casal JI, Pascual-Montano A, Albar JP, Fuentes M, Gonzalez-Gonzalez M, Diez P, Ibarrola N, Degano RM, Mohammed Y, Borchers CH, Urbani A, Soggiu A, Yamamoto T, Salekdeh GH, Archakov A, Ponomarenko E, Lisitsa A, Lichti CF, Mostovenko E, Kroes RA, Rezeli M, Végvári Á, Fehniger TE, Bischoff R, Vizcaíno JA, Deutsch EW, Lane L, Nilsson CL, Marko-Varga G, Omenn GS, Jeong SK, Lim JS, Paik YK, Hancock WS.

J Proteome Res. 2015 Sep 4;14(9):3415-31. doi: 10.1021/pr5013009. Epub 2015 Jul 23.

PMID:
26076068
45.

Quantification of biopharmaceuticals and biomarkers in complex biological matrices: a comparison of liquid chromatography coupled to tandem mass spectrometry and ligand binding assays.

Bults P, van de Merbel NC, Bischoff R.

Expert Rev Proteomics. 2015 Aug;12(4):355-74. doi: 10.1586/14789450.2015.1050384. Epub 2015 May 25. Review.

PMID:
26005069
46.

Stability of energy metabolites-An often overlooked issue in metabolomics studies: A review.

Gil A, Siegel D, Permentier H, Reijngoud DJ, Dekker F, Bischoff R.

Electrophoresis. 2015 May 11. doi: 10.1002/elps.201500031. [Epub ahead of print]

PMID:
25959207
47.

Printed peptide arrays identify prognostic TNC serumantibodies in glioblastoma patients.

Mock A, Warta R, Geisenberger C, Bischoff R, Schulte A, Lamszus K, Stadler V, Felgenhauer T, Schichor C, Schwartz C, Matschke J, Jungk C, Ahmadi R, Sahm F, Capper D, Glass R, Tonn JC, Westphal M, von Deimling A, Unterberg A, Bermejo JL, Herold-Mende C.

Oncotarget. 2015 May 30;6(15):13579-90.

48.

Antibody-free workflows for protein quantification by LC-MS/MS.

Wilffert D, Bischoff R, van de Merbel NC.

Bioanalysis. 2015;7(6):763-79. doi: 10.4155/bio.14.308. Review.

PMID:
25871591
49.

MicroPET Evaluation of a Hydroxamate-Based MMP Inhibitor, [(18)F]FB-ML5, in a Mouse Model of Cigarette Smoke-Induced Acute Airway Inflammation.

Matusiak N, van Waarde A, Rozeveld D, van Oosterhout AJ, Heijink IH, Castelli R, Overkleeft HS, Bischoff R, Dierckx RA, Elsinga PH.

Mol Imaging Biol. 2015 Oct;17(5):680-7. doi: 10.1007/s11307-015-0847-3.

PMID:
25822732
50.

Absolute quantification of the total and antidrug antibody-bound concentrations of recombinant human α-glucosidase in human plasma using protein G extraction and LC-MS/MS.

Bronsema KJ, Bischoff R, Pijnappel WW, van der Ploeg AT, van de Merbel NC.

Anal Chem. 2015 Apr 21;87(8):4394-401. doi: 10.1021/acs.analchem.5b00169. Epub 2015 Apr 7.

PMID:
25802928

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