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Items: 1 to 50 of 101

1.

Perspectives on theory at the interface of physics and biology.

Bialek W.

Rep Prog Phys. 2018 Jan;81(1):012601. doi: 10.1088/1361-6633/aa995b.

PMID:
29214982
2.

Collective Behavior of Place and Non-place Neurons in the Hippocampal Network.

Meshulam L, Gauthier JL, Brody CD, Tank DW, Bialek W.

Neuron. 2017 Dec 6;96(5):1178-1191.e4. doi: 10.1016/j.neuron.2017.10.027. Epub 2017 Nov 16.

PMID:
29154129
3.

Granulomatous prostatitis after intravesical immunotherapy mimicking prostate cancer.

Białek W, Rudzki S, Iberszer P, Wronecki L.

J Ultrason. 2016 Dec;16(67):404-410. doi: 10.15557/JoU.2016.0040. Epub 2016 Dec 30.

4.

Complexity of generic biochemical circuits: topology versus strength of interactions.

Tikhonov M, Bialek W.

Phys Biol. 2016 Dec 6;13(6):066012.

PMID:
27922834
5.

Predictability and hierarchy in Drosophila behavior.

Berman GJ, Bialek W, Shaevitz JW.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):11943-11948. Epub 2016 Oct 4.

6.

Entropic effects in a nonequilibrium system: Flocks of birds.

Castellana M, Bialek W, Cavagna A, Giardina I.

Phys Rev E. 2016 May;93(5):052416. doi: 10.1103/PhysRevE.93.052416. Epub 2016 May 23.

PMID:
27300933
7.

Capillary hemangioma of the testis. A case report of a rare benign tumor.

Białek W, Rudzki S, Wronecki L.

J Ultrason. 2016 Mar;16(64):87-93. doi: 10.15557/JoU.2016.0009. Epub 2016 Mar 29.

8.

Extending the dynamic range of transcription factor action by translational regulation.

Sokolowski TR, Walczak AM, Bialek W, Tkačik G.

Phys Rev E. 2016 Feb;93(2):022404. doi: 10.1103/PhysRevE.93.022404. Epub 2016 Feb 4.

9.

Identification of the Elusive Pyruvate Reductase of Chlamydomonas reinhardtii Chloroplasts.

Burgess SJ, Taha H, Yeoman JA, Iamshanova O, Chan KX, Boehm M, Behrends V, Bundy JG, Bialek W, Murray JW, Nixon PJ.

Plant Cell Physiol. 2016 Jan;57(1):82-94. doi: 10.1093/pcp/pcv167. Epub 2015 Nov 15.

10.

The Neural Code for Motor Control in the Cerebellum and Oculomotor Brainstem.

Chaisanguanthum KS, Joshua M, Medina JF, Bialek W, Lisberger SG.

eNeuro. 2014 Nov 12;1(1). pii: ENEURO.0004-14.2014. doi: 10.1523/ENEURO.0004-14.2014. eCollection 2014 Nov-Dec.

11.

Thermodynamics and signatures of criticality in a network of neurons.

Tkačik G, Mora T, Marre O, Amodei D, Palmer SE, Berry MJ 2nd, Bialek W.

Proc Natl Acad Sci U S A. 2015 Sep 15;112(37):11508-13. doi: 10.1073/pnas.1514188112. Epub 2015 Sep 1.

12.

Predictive information in a sensory population.

Palmer SE, Marre O, Berry MJ 2nd, Bialek W.

Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):6908-13. doi: 10.1073/pnas.1506855112. Epub 2015 May 18.

13.

Insights into the relationship between the haem-binding pocket and the redox potential of c6 cytochromes: four atomic resolution structures of c6 and c6-like proteins from Synechococcus sp. PCC 7002.

Bialek W, Krzywda S, Zatwarnicki P, Jaskolski M, Kolesinski P, Szczepaniak A.

Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2823-32. doi: 10.1107/S1399004714013108. Epub 2014 Oct 16.

PMID:
25372674
14.

Inverse spin glass and related maximum entropy problems.

Castellana M, Bialek W.

Phys Rev Lett. 2014 Sep 12;113(11):117204. Epub 2014 Sep 10.

PMID:
25260004
15.

Mapping the stereotyped behaviour of freely moving fruit flies.

Berman GJ, Choi DM, Bialek W, Shaevitz JW.

J R Soc Interface. 2014 Oct 6;11(99). pii: 20140672. doi: 10.1098/rsif.2014.0672.

16.

Anchoring a plant cytochrome P450 via PsaM to the thylakoids in Synechococcus sp. PCC 7002: evidence for light-driven biosynthesis.

Lassen LM, Nielsen AZ, Olsen CE, Bialek W, Jensen K, Møller BL, Jensen PE.

PLoS One. 2014 Jul 15;9(7):e102184. doi: 10.1371/journal.pone.0102184. eCollection 2014.

17.

Crystal structure of CyanoQ from the thermophilic cyanobacterium Thermosynechococcus elongatus and detection in isolated photosystem II complexes.

Michoux F, Boehm M, Bialek W, Takasaka K, Maghlaoui K, Barber J, Murray JW, Nixon PJ.

Photosynth Res. 2014 Oct;122(1):57-67. doi: 10.1007/s11120-014-0010-z. Epub 2014 May 18.

18.

Social interactions dominate speed control in poising natural flocks near criticality.

Bialek W, Cavagna A, Giardina I, Mora T, Pohl O, Silvestri E, Viale M, Walczak AM.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):7212-7. doi: 10.1073/pnas.1324045111. Epub 2014 May 1.

19.

Morphogenesis at criticality.

Krotov D, Dubuis JO, Gregor T, Bialek W.

Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3683-8. doi: 10.1073/pnas.1324186111. Epub 2014 Feb 10.

20.

Searching for collective behavior in a large network of sensory neurons.

Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry MJ 2nd.

PLoS Comput Biol. 2014 Jan;10(1):e1003408. doi: 10.1371/journal.pcbi.1003408. Epub 2014 Jan 2.

21.

Maximally informative "stimulus energies" in the analysis of neural responses to natural signals.

Rajan K, Bialek W.

PLoS One. 2013 Nov 8;8(11):e71959. doi: 10.1371/journal.pone.0071959. eCollection 2013.

22.

Crystal structure of the Psb28 accessory factor of Thermosynechococcus elongatus photosystem II at 2.3 Å.

Bialek W, Wen S, Michoux F, Beckova M, Komenda J, Murray JW, Nixon PJ.

Photosynth Res. 2013 Nov;117(1-3):375-83. doi: 10.1007/s11120-013-9939-6. Epub 2013 Oct 15.

PMID:
24126792
23.

Positional information, in bits.

Dubuis JO, Tkacik G, Wieschaus EF, Gregor T, Bialek W.

Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16301-8. doi: 10.1073/pnas.1315642110. Epub 2013 Oct 2.

24.

QnAs with William Bialek.

Bialek W.

Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16288. doi: 10.1073/pnas.1316837110. Epub 2013 Sep 25. No abstract available.

25.

Statistical thermodynamics of natural images.

Stephens GJ, Mora T, Tkačik G, Bialek W.

Phys Rev Lett. 2013 Jan 4;110(1):018701. Epub 2013 Jan 2.

PMID:
23383852
26.

Optimizing information flow in small genetic networks. III. A self-interacting gene.

Tkačik G, Walczak AM, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Apr;85(4 Pt 1):041903. Epub 2012 Apr 5.

PMID:
22680494
27.

Statistical mechanics for natural flocks of birds.

Bialek W, Cavagna A, Giardina I, Mora T, Silvestri E, Viale M, Walczak AM.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4786-91. doi: 10.1073/pnas.1118633109. Epub 2012 Mar 16.

28.

Synergy from silence in a combinatorial neural code.

Schneidman E, Puchalla JL, Segev R, Harris RA, Bialek W, Berry MJ 2nd.

J Neurosci. 2011 Nov 2;31(44):15732-41. doi: 10.1523/JNEUROSCI.0301-09.2011.

29.

Benign prostatic hyperplasia and lower urinary tract symptoms: research priorities.

De Nunzio C, Ahyai S, Autorino R, Bachmann A, Bialek W, Briganti A, Reich O, Sosnowski R, Thiruchelvam N, Novara G; European Association of Urology Young Academic Urologists BPH Group.

Eur Urol. 2011 Dec;60(6):1205-6. doi: 10.1016/j.eururo.2011.08.055. Epub 2011 Sep 7. No abstract available.

PMID:
21930341
30.

Structure of the RuBisCO chaperone RbcX from the thermophilic cyanobacterium Thermosynechococcus elongatus.

Tarnawski M, Krzywda S, Bialek W, Jaskolski M, Szczepaniak A.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Aug 1;67(Pt 8):851-7. doi: 10.1107/S1744309111018860. Epub 2011 Jul 13.

31.

[Pre-emptive ketoprofen for postoperative pain relief after urologic surgery].

Rutyna R, Popowicz M, Wojewoda P, Nestorowicz A, Białek W.

Anestezjol Intens Ter. 2011 Jan-Mar;43(1):18-21. Polish.

PMID:
21786525
32.

Emergence of long timescales and stereotyped behaviors in Caenorhabditis elegans.

Stephens GJ, Bueno de Mesquita M, Ryu WS, Bialek W.

Proc Natl Acad Sci U S A. 2011 May 3;108(18):7286-9. doi: 10.1073/pnas.1007868108. Epub 2011 Apr 18.

33.

Searching for simplicity in the analysis of neurons and behavior.

Stephens GJ, Osborne LC, Bialek W.

Proc Natl Acad Sci U S A. 2011 Sep 13;108 Suppl 3:15565-71. doi: 10.1073/pnas.1010868108. Epub 2011 Mar 7. Review.

34.

From modes to movement in the behavior of Caenorhabditis elegans.

Stephens GJ, Johnson-Kerner B, Bialek W, Ryu WS.

PLoS One. 2010 Nov 16;5(11):e13914. doi: 10.1371/journal.pone.0013914.

35.

Statistical mechanics of letters in words.

Stephens GJ, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jun;81(6 Pt 2):066119. Epub 2010 Jun 25.

36.

Optimizing information flow in small genetic networks. II. Feed-forward interactions.

Walczak AM, Tkacik G, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Apr;81(4 Pt 1):041905. Epub 2010 Apr 6.

PMID:
20481751
37.

Maximum entropy models for antibody diversity.

Mora T, Walczak AM, Bialek W, Callan CG Jr.

Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5405-10. doi: 10.1073/pnas.1001705107. Epub 2010 Mar 8.

38.

Optimizing information flow in small genetic networks.

Tkacik G, Walczak AM, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Sep;80(3 Pt 1):031920. Epub 2009 Sep 29.

39.

Atomic-resolution structure of reduced cyanobacterial cytochrome c6 with an unusual sequence insertion.

Bialek W, Krzywda S, Jaskolski M, Szczepaniak A.

FEBS J. 2009 Aug;276(16):4426-36. doi: 10.1111/j.1742-4658.2009.07150.x.

40.

Diffusion, dimensionality, and noise in transcriptional regulation.

Tkacik G, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 May;79(5 Pt 1):051901. Epub 2009 May 4.

PMID:
19518474
41.

The neural basis for combinatorial coding in a cortical population response.

Osborne LC, Palmer SE, Lisberger SG, Bialek W.

J Neurosci. 2008 Dec 10;28(50):13522-31. doi: 10.1523/JNEUROSCI.4390-08.2008.

42.

Information capacity of genetic regulatory elements.

Tkacik G, Callan CG Jr, Bialek W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jul;78(1 Pt 1):011910. Epub 2008 Jul 21.

43.

Information flow and optimization in transcriptional regulation.

Tkacik G, Callan CG Jr, Bialek W.

Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12265-70. doi: 10.1073/pnas.0806077105. Epub 2008 Aug 21.

44.

The role of input noise in transcriptional regulation.

Tkacik G, Gregor T, Bialek W.

PLoS One. 2008 Jul 23;3(7):e2774. doi: 10.1371/journal.pone.0002774.

45.

Cooperativity, sensitivity, and noise in biochemical signaling.

Bialek W, Setayeshgar S.

Phys Rev Lett. 2008 Jun 27;100(25):258101. Epub 2008 Jun 23.

PMID:
18643705
46.

Deeply branching c6-like cytochromes of cyanobacteria.

Bialek W, Nelson M, Tamiola K, Kallas T, Szczepaniak A.

Biochemistry. 2008 May 20;47(20):5515-22. doi: 10.1021/bi701973g. Epub 2008 Apr 26.

PMID:
18439023
47.

Dimensionality and dynamics in the behavior of C. elegans.

Stephens GJ, Johnson-Kerner B, Bialek W, Ryu WS.

PLoS Comput Biol. 2008 Apr 25;4(4):e1000028. doi: 10.1371/journal.pcbi.1000028.

48.

Neural coding of natural stimuli: information at sub-millisecond resolution.

Nemenman I, Lewen GD, Bialek W, de Ruyter van Steveninck RR.

PLoS Comput Biol. 2008 Mar 7;4(3):e1000025. doi: 10.1371/journal.pcbi.1000025.

49.

Neural decision boundaries for maximal information transmission.

Sharpee T, Bialek W.

PLoS One. 2007 Jul 25;2(7):e646.

50.

Probing the limits to positional information.

Gregor T, Tank DW, Wieschaus EF, Bialek W.

Cell. 2007 Jul 13;130(1):153-64.

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