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Size-reduced embryos reveal a gradient scaling based mechanism for zebrafish somite formation.

Ishimatsu K, Hiscock TW, Collins ZM, Sari DWK, Lischer K, Richmond DL, Bessho Y, Matsui T, Megason SG.

Development. 2018 May 16. pii: dev.161257. doi: 10.1242/dev.161257. [Epub ahead of print]


Strategy for the accurate preoperative evaluation of the number of metastatic axillary lymph nodes in breast cancer.

Imai N, Kitayama M, Shibahara A, Bessho Y, Shibusawa M, Noro A, Inakami K, Hanamura N, Imai H, Ogawa T.

Asian J Surg. 2018 Apr 13. pii: S1015-9584(17)30571-7. doi: 10.1016/j.asjsur.2018.03.003. [Epub ahead of print]


Author Correction: Localization and function of neurosecretory protein GM, a novel small secretory protein, in the chicken hypothalamus.

Shikano K, Bessho Y, Kato M, Iwakoshi-Ukena E, Taniuchi S, Furumitsu M, Tachibana T, Bentley GE, Kriegsfeld LJ, Ukena K.

Sci Rep. 2018 Apr 13;8(1):6235. doi: 10.1038/s41598-018-24103-w.


Time-lapse observation of stepwise regression of Erk activity in zebrafish presomitic mesoderm.

Sari DWK, Akiyama R, Naoki H, Ishijima H, Bessho Y, Matsui T.

Sci Rep. 2018 Mar 12;8(1):4335. doi: 10.1038/s41598-018-22619-9.


Effect of decrease in radial inclination of distal radius fractures on distal radioulnar joint stability: a biomechanical study.

Bessho Y, Nakamura T, Nishiwaki M, Nagura T, Matsumoto M, Nakamura M, Sato K.

J Hand Surg Eur Vol. 2018 Jan 1:1753193418761266. doi: 10.1177/1753193418761266. [Epub ahead of print]


Bmal1-deficient mouse fibroblast cells do not provide premature cellular senescence in vitro.

Nakahata Y, Yasukawa S, Khaidizar FD, Shimba S, Matsui T, Bessho Y.

Chronobiol Int. 2018 Jan 26:1-9. doi: 10.1080/07420528.2018.1430038. [Epub ahead of print]


Localization and function of neurosecretory protein GM, a novel small secretory protein, in the chicken hypothalamus.

Shikano K, Bessho Y, Kato M, Iwakoshi-Ukena E, Taniuchi S, Furumitsu M, Tachibana T, Bentley GE, Kriegsfeld LJ, Ukena K.

Sci Rep. 2018 Jan 15;8(1):704. doi: 10.1038/s41598-017-18822-9. Erratum in: Sci Rep. 2018 Apr 13;8(1):6235.


Nicotinamide phosphoribosyltransferase delays cellular senescence by upregulating SIRT1 activity and antioxidant gene expression in mouse cells.

Khaidizar FD, Nakahata Y, Kume A, Sumizawa K, Kohno K, Matsui T, Bessho Y.

Genes Cells. 2017 Dec;22(12):982-992. doi: 10.1111/gtc.12542. Epub 2017 Nov 27.


Method for measuring tri-axial lumbar motion angles using wearable sheet stretch sensors.

Yamamoto A, Nakamoto H, Yamaji T, Ootaka H, Bessho Y, Nakamura R, Ono R.

PLoS One. 2017 Oct 11;12(10):e0183651. doi: 10.1371/journal.pone.0183651. eCollection 2017.


Quantitative analysis of mechanical force required for cell extrusion in zebrafish embryonic epithelia.

Yamada S, Iino T, Bessho Y, Hosokawa Y, Matsui T.

Biol Open. 2017 Oct 15;6(10):1575-1580. doi: 10.1242/bio.027847.


Phospho-Priming Confers Functionally Relevant Specificities for Rad53 Kinase Autophosphorylation.

Chen ES, Weng JH, Chen YH, Wang SC, Liu XX, Huang WC, Matsui T, Kawano Y, Liao JH, Lim LH, Bessho Y, Huang KF, Wu WJ, Tsai MD.

Biochemistry. 2017 Sep 26;56(38):5112-5124. doi: 10.1021/acs.biochem.7b00689. Epub 2017 Sep 15.


Ribosomal protein L31 in Escherichia coli contributes to ribosome subunit association and translation, whereas short L31 cleaved by protease 7 reduces both activities.

Ueta M, Wada C, Bessho Y, Maeda M, Wada A.

Genes Cells. 2017 May;22(5):452-471. doi: 10.1111/gtc.12488. Epub 2017 Apr 10.


JTP-117968, a novel selective glucocorticoid receptor modulator, exhibits improved transrepression/transactivation dissociation.

Kurimoto T, Tamai I, Miyai A, Kosugi Y, Nakagawa T, Yamamoto Y, Deai K, Misaki S, Bessho Y, Negoro T, Yamaguchi T, Hata T, Matsushita M.

Eur J Pharmacol. 2017 May 15;803:179-186. doi: 10.1016/j.ejphar.2017.03.057. Epub 2017 Mar 31.


The Circadian NAD+ Metabolism: Impact on Chromatin Remodeling and Aging.

Nakahata Y, Bessho Y.

Biomed Res Int. 2016;2016:3208429. doi: 10.1155/2016/3208429. Epub 2016 Dec 5. Review.


Analyzing ERK Signal Dynamics During Zebrafish Somitogenesis.

Matsui T, Bessho Y.

Methods Mol Biol. 2017;1487:367-378.


Yolk/Shell Assembly of Gold Nanoparticles by Size Segregation in Solution.

Wei J, Niikura K, Higuchi T, Kimura T, Mitomo H, Jinnai H, Joti Y, Bessho Y, Nishino Y, Matsuo Y, Ijiro K.

J Am Chem Soc. 2016 Mar 16;138(10):3274-7. doi: 10.1021/jacs.5b12456. Epub 2016 Mar 3.


Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria.

Thiaville PC, El Yacoubi B, Köhrer C, Thiaville JJ, Deutsch C, Iwata-Reuyl D, Bacusmo JM, Armengaud J, Bessho Y, Wetzel C, Cao X, Limbach PA, RajBhandary UL, de Crécy-Lagard V.

Mol Microbiol. 2015 Dec;98(6):1199-221. doi: 10.1111/mmi.13209. Epub 2015 Oct 7.


Cell collectivity regulation within migrating cell cluster during Kupffer's vesicle formation in zebrafish.

Matsui T, Ishikawa H, Bessho Y.

Front Cell Dev Biol. 2015 May 7;3:27. doi: 10.3389/fcell.2015.00027. eCollection 2015. Review.


Effect of volar angulation of extra-articular distal radius fractures on distal radioulnar joint stability: a biomechanical study.

Bessho Y, Nakamura T, Nagura T, Nishiwaki M, Sato K, Toyama Y.

J Hand Surg Eur Vol. 2015 Oct;40(8):775-82. doi: 10.1177/1753193415584716. Epub 2015 May 4.


Synthesis of Janus-like gold nanoparticles with hydrophilic/hydrophobic faces by surface ligand exchange and their self-assemblies in water.

Iida R, Kawamura H, Niikura K, Kimura T, Sekiguchi S, Joti Y, Bessho Y, Mitomo H, Nishino Y, Ijiro K.

Langmuir. 2015 Apr 14;31(14):4054-62. doi: 10.1021/la504647z. Epub 2015 Apr 1.


Crystal structure of the MazG-related nucleoside triphosphate pyrophosphohydrolase from Thermotoga maritima MSB8.

Padmanabhan B, Deshmukh P, Yokoyama S, Bessho Y.

J Struct Funct Genomics. 2015 Jun;16(2):81-9. doi: 10.1007/s10969-015-9195-4. Epub 2015 Mar 11.


Hes7 3'UTR is required for somite segmentation function.

Fujimuro T, Matsui T, Nitanda Y, Matta T, Sakumura Y, Saito M, Kohno K, Nakahata Y, Bessho Y.

Sci Rep. 2014 Sep 24;4:6462. doi: 10.1038/srep06462.


Characterization of an avian histidine decarboxylase and localization of histaminergic neurons in the chicken brain.

Bessho Y, Iwakoshi-Ukena E, Tachibana T, Maejima S, Taniuchi S, Masuda K, Shikano K, Kondo K, Furumitsu M, Ukena K.

Neurosci Lett. 2014 Aug 22;578:106-10. doi: 10.1016/j.neulet.2014.06.048. Epub 2014 Jun 30.


Crystal structure of tRNA m(1)A58 methyltransferase TrmI from Aquifex aeolicus in complex with S-adenosyl-L-methionine.

Kuratani M, Yanagisawa T, Ishii R, Matsuno M, Si SY, Katsura K, Ushikoshi-Nakayama R, Shibata R, Shirouzu M, Bessho Y, Yokoyama S.

J Struct Funct Genomics. 2014 Sep;15(3):173-80. doi: 10.1007/s10969-014-9183-0. Epub 2014 Jun 4.


Identification of neurotensin and LANT-6 and localization of mRNA encoding their precursor in the chicken brain.

Masuda K, Iwakoshi-Ukena E, Bessho Y, Taniuchi S, Maejima S, Shikano K, Kondo K, Furumitsu M, Ukena K.

Zoolog Sci. 2014 Jun;31(6):353-9. doi: 10.2108/zs140010.


Macromolecular structures probed by combining single-shot free-electron laser diffraction with synchrotron coherent X-ray imaging.

Gallagher-Jones M, Bessho Y, Kim S, Park J, Kim S, Nam D, Kim C, Kim Y, Noh do Y, Miyashita O, Tama F, Joti Y, Kameshima T, Hatsui T, Tono K, Kohmura Y, Yabashi M, Hasnain SS, Ishikawa T, Song C.

Nat Commun. 2014 May 2;5:3798. doi: 10.1038/ncomms4798.


Identification of a cDNA encoding a novel small secretory protein, neurosecretory protein GL, in the chicken hypothalamic infundibulum.

Ukena K, Iwakoshi-Ukena E, Taniuchi S, Bessho Y, Maejima S, Masuda K, Shikano K, Kondo K, Furumitsu M, Tachibana T.

Biochem Biophys Res Commun. 2014 Mar 28;446(1):298-303. doi: 10.1016/j.bbrc.2014.02.090. Epub 2014 Feb 28.


An anterior limit of FGF/Erk signal activity marks the earliest future somite boundary in zebrafish.

Akiyama R, Masuda M, Tsuge S, Bessho Y, Matsui T.

Development. 2014 Mar;141(5):1104-9. doi: 10.1242/dev.098905. Epub 2014 Feb 6.


Imaging live cell in micro-liquid enclosure by X-ray laser diffraction.

Kimura T, Joti Y, Shibuya A, Song C, Kim S, Tono K, Yabashi M, Tamakoshi M, Moriya T, Oshima T, Ishikawa T, Bessho Y, Nishino Y.

Nat Commun. 2014;5:3052. doi: 10.1038/ncomms4052.


Retinoic acid controls proper head-to-trunk linkage in zebrafish by regulating an anteroposterior somitogenetic rate difference.

Retnoaji B, Akiyama R, Matta T, Bessho Y, Matsui T.

Development. 2014 Jan;141(1):158-65. doi: 10.1242/dev.097568. Epub 2013 Nov 27.


3'-UTR-dependent regulation of mRNA turnover is critical for differential distribution patterns of cyclic gene mRNAs.

Nitanda Y, Matsui T, Matta T, Higami A, Kohno K, Nakahata Y, Bessho Y.

FEBS J. 2014 Jan;281(1):146-56. doi: 10.1111/febs.12582. Epub 2013 Nov 18.


Celf1 is required for formation of endoderm-derived organs in zebrafish.

Tahara N, Bessho Y, Matsui T.

Int J Mol Sci. 2013 Sep 3;14(9):18009-23. doi: 10.3390/ijms140918009.


Crystal structure of putative CbiT from Methanocaldococcus jannaschii: an intermediate enzyme activity in cobalamin (vitamin B12) biosynthesis.

Padmanabhan B, Yokoyama S, Bessho Y.

BMC Struct Biol. 2013 May 20;13:10. doi: 10.1186/1472-6807-13-10.


Conservation of two distinct types of 100S ribosome in bacteria.

Ueta M, Wada C, Daifuku T, Sako Y, Bessho Y, Kitamura A, Ohniwa RL, Morikawa K, Yoshida H, Kato T, Miyata T, Namba K, Wada A.

Genes Cells. 2013 Jul;18(7):554-74. doi: 10.1111/gtc.12057. Epub 2013 May 13.


Life without tRNAArg-adenosine deaminase TadA: evolutionary consequences of decoding the four CGN codons as arginine in Mycoplasmas and other Mollicutes.

Yokobori S, Kitamura A, Grosjean H, Bessho Y.

Nucleic Acids Res. 2013 Jul;41(13):6531-43. doi: 10.1093/nar/gkt356. Epub 2013 May 8.


Structure of the hypothetical DUF1811-family protein GK0453 from Geobacillus kaustophilus HTA426.

Padmanabhan B, Nakamura Y, Antonyuk SV, Strange RW, Hasnain SS, Yokoyama S, Bessho Y.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):342-5. doi: 10.1107/S1744309113003369. Epub 2013 Mar 28.


Thermostable Mismatch-Recognizing Protein MutS Suppresses Nonspecific Amplification during Polymerase Chain Reaction (PCR).

Fukui K, Bessho Y, Shimada A, Yokoyama S, Kuramitsu S.

Int J Mol Sci. 2013 Mar 21;14(3):6436-53. doi: 10.3390/ijms14036436.


Hyperpolarisation-activated cyclic nucleotide-gated channels regulate the spontaneous firing rate of olfactory receptor neurons and affect glomerular formation in mice.

Nakashima N, Ishii TM, Bessho Y, Kageyama R, Ohmori H.

J Physiol. 2013 Apr 1;591(7):1749-69. doi: 10.1113/jphysiol.2012.247361. Epub 2013 Jan 14.


Characterization and structure of the Aquifex aeolicus protein DUF752: a bacterial tRNA-methyltransferase (MnmC2) functioning without the usually fused oxidase domain (MnmC1).

Kitamura A, Nishimoto M, Sengoku T, Shibata R, Jäger G, Björk GR, Grosjean H, Yokoyama S, Bessho Y.

J Biol Chem. 2012 Dec 21;287(52):43950-60. doi: 10.1074/jbc.M112.409300. Epub 2012 Oct 22.


Celf1 regulation of dmrt2a is required for somite symmetry and left-right patterning during zebrafish development.

Matsui T, Sasaki A, Akazawa N, Otani H, Bessho Y.

Development. 2012 Oct;139(19):3553-60. doi: 10.1242/dev.077263. Epub 2012 Aug 16.


[A case of Rh-incompatible transfusion in critical hemorrhage].

Bessho Y, Sugai K, Fuse A, Hitomi E, Sugai Y.

Masui. 2012 Mar;61(3):311-3. Japanese.


Left-right asymmetry in zebrafish.

Matsui T, Bessho Y.

Cell Mol Life Sci. 2012 Sep;69(18):3069-77. doi: 10.1007/s00018-012-0985-6. Epub 2012 Apr 19. Review.


Impact of chronic kidney disease on the presence and severity of aortic stenosis in patients at high risk for coronary artery disease.

Masuda C, Dohi K, Sakurai Y, Bessho Y, Fukuda H, Fujii S, Sugimoto T, Tanabe M, Onishi K, Shiraki K, Ito M, Nobori T.

Cardiovasc Ultrasound. 2011 Nov 16;9:31. doi: 10.1186/1476-7120-9-31.


Double plate fixation for correction of the malunited distal ulna fracture: a case report.

Bessho Y, Okazaki M, Nakamura T.

Hand Surg. 2011;16(3):335-7.


Substrate tRNA recognition mechanism of a multisite-specific tRNA methyltransferase, Aquifex aeolicus Trm1, based on the X-ray crystal structure.

Awai T, Ochi A, Ihsanawati, Sengoku T, Hirata A, Bessho Y, Yokoyama S, Hori H.

J Biol Chem. 2011 Oct 7;286(40):35236-46. doi: 10.1074/jbc.M111.253641. Epub 2011 Aug 15.


The period of the somite segmentation clock is sensitive to Notch activity.

Kim W, Matsui T, Yamao M, Ishibashi M, Tamada K, Takumi T, Kohno K, Oba S, Ishii S, Sakumura Y, Bessho Y.

Mol Biol Cell. 2011 Sep;22(18):3541-9. doi: 10.1091/mbc.E11-02-0139. Epub 2011 Jul 27.


Canopy1, a positive feedback regulator of FGF signaling, controls progenitor cell clustering during Kupffer's vesicle organogenesis.

Matsui T, Thitamadee S, Murata T, Kakinuma H, Nabetani T, Hirabayashi Y, Hirate Y, Okamoto H, Bessho Y.

Proc Natl Acad Sci U S A. 2011 Jun 14;108(24):9881-6. doi: 10.1073/pnas.1017248108. Epub 2011 May 31.


Crystal structure of the bifunctional tRNA modification enzyme MnmC from Escherichia coli.

Kitamura A, Sengoku T, Nishimoto M, Yokoyama S, Bessho Y.

Protein Sci. 2011 Jul;20(7):1105-13. doi: 10.1002/pro.659. Epub 2011 Jun 2.


Crystal structure of Sulfolobus tokodaii Sua5 complexed with L-threonine and AMPPNP.

Kuratani M, Kasai T, Akasaka R, Higashijima K, Terada T, Kigawa T, Shinkai A, Bessho Y, Yokoyama S.

Proteins. 2011 Jul;79(7):2065-75. doi: 10.1002/prot.23026. Epub 2011 May 2.


Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase.

Hikida Y, Kuratani M, Bessho Y, Sekine SI, Yokoyama S.

Acta Crystallogr D Biol Crystallogr. 2010 Dec;66(Pt 12):1301-7. doi: 10.1107/S0907444910037558. Epub 2010 Nov 16.


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