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Operating principles of tristable circuits regulating cellular differentiation.

Jia D, Jolly MK, Harrison W, Boareto M, Ben-Jacob E, Levine H.

Phys Biol. 2017 May 23;14(3):035007. doi: 10.1088/1478-3975/aa6f90.


Interrogating the topological robustness of gene regulatory circuits by randomization.

Huang B, Lu M, Jia D, Ben-Jacob E, Levine H, Onuchic JN.

PLoS Comput Biol. 2017 Mar 31;13(3):e1005456. doi: 10.1371/journal.pcbi.1005456. eCollection 2017 Mar.


Modeling the Genetic Regulation of Cancer Metabolism: Interplay between Glycolysis and Oxidative Phosphorylation.

Yu L, Lu M, Jia D, Ma J, Ben-Jacob E, Levine H, Kaipparettu BA, Onuchic JN.

Cancer Res. 2017 Apr 1;77(7):1564-1574. doi: 10.1158/0008-5472.CAN-16-2074. Epub 2017 Feb 15.


Effect of Peripheral Electrical Stimulation (PES) on Nocturnal Blood Glucose in Type 2 Diabetes: A Randomized Crossover Pilot Study.

Catalogna M, Doenyas-Barak K, Sagi R, Abu-Hamad R, Nevo U, Ben-Jacob E, Efrati S.

PLoS One. 2016 Dec 20;11(12):e0168805. doi: 10.1371/journal.pone.0168805. eCollection 2016.


Dependency Network Analysis (DEPNA) Reveals Context Related Influence of Brain Network Nodes.

Jacob Y, Winetraub Y, Raz G, Ben-Simon E, Okon-Singer H, Rosenberg-Katz K, Hendler T, Ben-Jacob E.

Sci Rep. 2016 Jun 7;6:27444. doi: 10.1038/srep27444.


Regulation of glucose dynamics by noninvasive peripheral electrical stimulation in normal and insulin-resistant rats.

Catalogna M, Fishman S, Halpern Z, Ben-Shlomo S, Nevo U, Ben-Jacob E.

Metabolism. 2016 Jun;65(6):863-73. doi: 10.1016/j.metabol.2016.03.004. Epub 2016 Mar 17.


Notch-Jagged signalling can give rise to clusters of cells exhibiting a hybrid epithelial/mesenchymal phenotype.

Boareto M, Jolly MK, Goldman A, Pietilä M, Mani SA, Sengupta S, Ben-Jacob E, Levine H, Onuchic JN.

J R Soc Interface. 2016 May;13(118). pii: 20151106. doi: 10.1098/rsif.2015.1106.


The Dynamics of Wealth Inequality and the Effect of Income Distribution.

Berman Y, Ben-Jacob E, Shapira Y.

PLoS One. 2016 Apr 22;11(4):e0154196. doi: 10.1371/journal.pone.0154196. eCollection 2016.


Modularity Induced Gating and Delays in Neuronal Networks.

Shein-Idelson M, Cohen G, Ben-Jacob E, Hanein Y.

PLoS Comput Biol. 2016 Apr 22;12(4):e1004883. doi: 10.1371/journal.pcbi.1004883. eCollection 2016 Apr.


Analyzing the Long Term Cohesive Effect of Sector Specific Driving Forces.

Berman Y, Ben-Jacob E, Zhang X, Shapira Y.

PLoS One. 2016 Mar 31;11(3):e0152487. doi: 10.1371/journal.pone.0152487. eCollection 2016.


Stability of the hybrid epithelial/mesenchymal phenotype.

Jolly MK, Tripathi SC, Jia D, Mooney SM, Celiktas M, Hanash SM, Mani SA, Pienta KJ, Ben-Jacob E, Levine H.

Oncotarget. 2016 May 10;7(19):27067-84. doi: 10.18632/oncotarget.8166.


Immunoproteasome deficiency is a feature of non-small cell lung cancer with a mesenchymal phenotype and is associated with a poor outcome.

Tripathi SC, Peters HL, Taguchi A, Katayama H, Wang H, Momin A, Jolly MK, Celiktas M, Rodriguez-Canales J, Liu H, Behrens C, Wistuba II, Ben-Jacob E, Levine H, Molldrem JJ, Hanash SM, Ostrin EJ.

Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):E1555-64. doi: 10.1073/pnas.1521812113. Epub 2016 Feb 29.


Periodic, Quasi-periodic and Chaotic Dynamics in Simple Gene Elements with Time Delays.

Suzuki Y, Lu M, Ben-Jacob E, Onuchic JN.

Sci Rep. 2016 Feb 15;6:21037. doi: 10.1038/srep21037.


Multispecies Swarms of Social Microorganisms as Moving Ecosystems.

Ben-Jacob E, Finkelshtein A, Ariel G, Ingham C.

Trends Microbiol. 2016 Apr;24(4):257-269. doi: 10.1016/j.tim.2015.12.008. Epub 2016 Jan 25. Review.


Modeling the Transitions between Collective and Solitary Migration Phenotypes in Cancer Metastasis.

Huang B, Jolly MK, Lu M, Tsarfaty I, Ben-Jacob E, Onuchic JN.

Sci Rep. 2015 Dec 2;5:17379. doi: 10.1038/srep17379.


Hyperbaric oxygen may induce angiogenesis in patients suffering from prolonged post-concussion syndrome due to traumatic brain injury.

Tal S, Hadanny A, Berkovitz N, Sasson E, Ben-Jacob E, Efrati S.

Restor Neurol Neurosci. 2015;33(6):943-51. doi: 10.3233/RNN-150585.


Hyperbaric oxygen can induce neuroplasticity and improve cognitive functions of patients suffering from anoxic brain damage.

Hadanny A, Golan H, Fishlev G, Bechor Y, Volkov O, Suzin G, Ben-Jacob E, Efrati S.

Restor Neurol Neurosci. 2015;33(4):471-86. doi: 10.3233/RNN-150517.


The motility-proliferation-metabolism interplay during metastatic invasion.

Hecht I, Natan S, Zaritsky A, Levine H, Tsarfaty I, Ben-Jacob E.

Sci Rep. 2015 Sep 4;5:13538. doi: 10.1038/srep13538.


Coupling the modules of EMT and stemness: A tunable 'stemness window' model.

Jolly MK, Jia D, Boareto M, Mani SA, Pienta KJ, Ben-Jacob E, Levine H.

Oncotarget. 2015 Sep 22;6(28):25161-74. doi: 10.18632/oncotarget.4629.


Formation and Dynamics of Waves in a Cortical Model of Cholinergic Modulation.

Roach JP, Ben-Jacob E, Sander LM, Zochowski MR.

PLoS Comput Biol. 2015 Aug 21;11(8):e1004449. doi: 10.1371/journal.pcbi.1004449. eCollection 2015 Aug.


Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.

Fang X, Nevo E, Han L, Levanon EY, Zhao J, Avivi A, Larkin D, Jiang X, Feranchuk S, Zhu Y, Fishman A, Feng Y, Sher N, Xiong Z, Hankeln T, Huang Z, Gorbunova V, Zhang L, Zhao W, Wildman DE, Xiong Y, Gudkov A, Zheng Q, Rechavi G, Liu S, Bazak L, Chen J, Knisbacher BA, Lu Y, Shams I, Gajda K, Farré M, Kim J, Lewin HA, Ma J, Band M, Bicker A, Kranz A, Mattheus T, Schmidt H, Seluanov A, Azpurua J, McGowen MR, Ben Jacob E, Li K, Peng S, Zhu X, Liao X, Li S, Krogh A, Zhou X, Brodsky L, Wang J.

Nat Commun. 2015 Aug 12;6:8051. doi: 10.1038/ncomms9051. No abstract available.


Implications of the Hybrid Epithelial/Mesenchymal Phenotype in Metastasis.

Jolly MK, Boareto M, Huang B, Jia D, Lu M, Ben-Jacob E, Onuchic JN, Levine H.

Front Oncol. 2015 Jul 20;5:155. doi: 10.3389/fonc.2015.00155. eCollection 2015. Review.


Erratum: Tumor Invasion Optimization by Mesenchymal-Amoeboid Heterogeneity.

Hecht I, Bar-El Y, Balmer F, Natan S, Tsarfaty I, Schweitzer F, Ben-Jacob E.

Sci Rep. 2015 Jul 30;5:12121. doi: 10.1038/srep12121. No abstract available.


Jagged mediates differences in normal and tumor angiogenesis by affecting tip-stalk fate decision.

Boareto M, Jolly MK, Ben-Jacob E, Onuchic JN.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):E3836-44. doi: 10.1073/pnas.1511814112. Epub 2015 Jul 7.


Modeling the Origin and Possible Control of the Wealth Inequality Surge.

Berman Y, Shapira Y, Ben-Jacob E.

PLoS One. 2015 Jun 24;10(6):e0130181. doi: 10.1371/journal.pone.0130181. eCollection 2015. Erratum in: PLoS One. 2015;10(8):e0135548.


Tumor invasion optimization by mesenchymal-amoeboid heterogeneity.

Hecht I, Bar-El Y, Balmer F, Natan S, Tsarfaty I, Schweitzer F, Ben-Jacob E.

Sci Rep. 2015 May 27;5:10622. doi: 10.1038/srep10622. Erratum in: Sci Rep. 2015;5:12121.


Hyperbaric oxygen therapy can diminish fibromyalgia syndrome--prospective clinical trial.

Efrati S, Golan H, Bechor Y, Faran Y, Daphna-Tekoah S, Sekler G, Fishlev G, Ablin JN, Bergan J, Volkov O, Friedman M, Ben-Jacob E, Buskila D.

PLoS One. 2015 May 26;10(5):e0127012. doi: 10.1371/journal.pone.0127012. eCollection 2015.


Bacterial swarms recruit cargo bacteria to pave the way in toxic environments.

Finkelshtein A, Roth D, Ben Jacob E, Ingham CJ.

MBio. 2015 May 12;6(3):e00074-15. doi: 10.1128/mBio.00074-15.


OVOL guides the epithelial-hybrid-mesenchymal transition.

Jia D, Jolly MK, Boareto M, Parsana P, Mooney SM, Pienta KJ, Levine H, Ben-Jacob E.

Oncotarget. 2015 Jun 20;6(17):15436-48.


Design, Surface Treatment, Cellular Plating, and Culturing of Modular Neuronal Networks Composed of Functionally Inter-connected Circuits.

Kanner S, Bisio M, Cohen G, Goldin M, Tedesco M, Hanein Y, Ben-Jacob E, Barzilai A, Chiappalone M, Bonifazi P.

J Vis Exp. 2015 Apr 15;(98). doi: 10.3791/52572.


Tumor-associated and disease-associated autoantibody repertoires in healthy colostrum and maternal and newborn cord sera.

Madi A, Bransburg-Zabary S, Maayan-Metzger A, Dar G, Ben-Jacob E, Cohen IR.

J Immunol. 2015 Jun 1;194(11):5272-81. doi: 10.4049/jimmunol.1402771. Epub 2015 Apr 27.


Mechanically-driven phase separation in a growing bacterial colony.

Ghosh P, Mondal J, Ben-Jacob E, Levine H.

Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):E2166-73. doi: 10.1073/pnas.1504948112. Epub 2015 Apr 13.


Prostate cancer and neuroendocrine differentiation: more neuronal, less endocrine?

Grigore AD, Ben-Jacob E, Farach-Carson MC.

Front Oncol. 2015 Mar 3;5:37. doi: 10.3389/fonc.2015.00037. eCollection 2015. Review.


Live time-lapse dataset of in vitro wound healing experiments.

Zaritsky A, Natan S, Kaplan D, Ben-Jacob E, Tsarfaty I.

Gigascience. 2015 Feb 25;4:8. doi: 10.1186/s13742-015-0049-6. eCollection 2015.


Antibiotic-induced anomalous statistics of collective bacterial swarming.

Benisty S, Ben-Jacob E, Ariel G, Be'er A.

Phys Rev Lett. 2015 Jan 9;114(1):018105. Epub 2015 Jan 6.


Jagged-Delta asymmetry in Notch signaling can give rise to a Sender/Receiver hybrid phenotype.

Boareto M, Jolly MK, Lu M, Onuchic JN, Clementi C, Ben-Jacob E.

Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):E402-9. doi: 10.1073/pnas.1416287112. Epub 2015 Jan 20.


Glutamate mediated astrocytic filtering of neuronal activity.

Wallach G, Lallouette J, Herzog N, De Pittà M, Ben Jacob E, Berry H, Hanein Y.

PLoS Comput Biol. 2014 Dec 18;10(12):e1003964. doi: 10.1371/journal.pcbi.1003964. eCollection 2014 Dec.


The physics of bacterial decision making.

Ben-Jacob E, Lu M, Schultz D, Onuchic JN.

Front Cell Infect Microbiol. 2014 Oct 30;4:154. doi: 10.3389/fcimb.2014.00154. eCollection 2014. Review.


Improvement of memory impairments in poststroke patients by hyperbaric oxygen therapy.

Boussi-Gross R, Golan H, Volkov O, Bechor Y, Hoofien D, Beeri MS, Ben-Jacob E, Efrati S.

Neuropsychology. 2015 Jul;29(4):610-21. doi: 10.1037/neu0000149. Epub 2014 Nov 10.


Unraveling hidden order in the dynamics of developed and emerging markets.

Berman Y, Shapira Y, Ben-Jacob E.

PLoS One. 2014 Nov 10;9(11):e112427. doi: 10.1371/journal.pone.0112427. eCollection 2014.


Towards elucidating the connection between epithelial-mesenchymal transitions and stemness.

Jolly MK, Huang B, Lu M, Mani SA, Levine H, Ben-Jacob E.

J R Soc Interface. 2014 Dec 6;11(101):20140962. doi: 10.1098/rsif.2014.0962.


My encounters with bacteria--learning about communication, cooperation and choice.

Ben-Jacob E.

Phys Biol. 2014 Oct 8;11(5):053009. doi: 10.1088/1478-3975/11/5/053009.


Polarity mechanisms such as contact inhibition of locomotion regulate persistent rotational motion of mammalian cells on micropatterns.

Camley BA, Zhang Y, Zhao Y, Li B, Ben-Jacob E, Levine H, Rappel WJ.

Proc Natl Acad Sci U S A. 2014 Oct 14;111(41):14770-5. doi: 10.1073/pnas.1414498111. Epub 2014 Sep 25.


Clique of functional hubs orchestrates population bursts in developmentally regulated neural networks.

Luccioli S, Ben-Jacob E, Barzilai A, Bonifazi P, Torcini A.

PLoS Comput Biol. 2014 Sep 25;10(9):e1003823. doi: 10.1371/journal.pcbi.1003823. eCollection 2014 Sep.


Modeling putative therapeutic implications of exosome exchange between tumor and immune cells.

Lu M, Huang B, Hanash SM, Onuchic JN, Ben-Jacob E.

Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):E4165-74. doi: 10.1073/pnas.1416745111. Epub 2014 Sep 22.


The three-way switch operation of Rac1/RhoA GTPase-based circuit controlling amoeboid-hybrid-mesenchymal transition.

Huang B, Lu M, Jolly MK, Tsarfaty I, Onuchic J, Ben-Jacob E.

Sci Rep. 2014 Sep 23;4:6449. doi: 10.1038/srep06449.


Toward decoding the principles of cancer metastasis circuits.

Lu M, Jolly MK, Onuchic J, Ben-Jacob E.

Cancer Res. 2014 Sep 1;74(17):4574-87. doi: 10.1158/0008-5472.CAN-13-3367.


Construction of an effective landscape for multistate genetic switches.

Lu M, Onuchic J, Ben-Jacob E.

Phys Rev Lett. 2014 Aug 15;113(7):078102. Epub 2014 Aug 13.


Propagating waves of directionality and coordination orchestrate collective cell migration.

Zaritsky A, Kaplan D, Hecht I, Natan S, Wolf L, Gov NS, Ben-Jacob E, Tsarfaty I.

PLoS Comput Biol. 2014 Jul 24;10(7):e1003747. doi: 10.1371/journal.pcbi.1003747. eCollection 2014 Jul.


Individual pause-and-go motion is instrumental to the formation and maintenance of swarms of marching locust nymphs.

Ariel G, Ophir Y, Levi S, Ben-Jacob E, Ayali A.

PLoS One. 2014 Jul 2;9(7):e101636. doi: 10.1371/journal.pone.0101636. eCollection 2014.

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