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Items: 16

1.

Rapid curation of gene disruption collections using Knockout Sudoku.

Anzai IA, Shaket L, Adesina O, Baym M, Barstow B.

Nat Protoc. 2017 Oct;12(10):2110-2137. doi: 10.1038/nprot.2017.073. Epub 2017 Sep 14.

PMID:
28906493
2.

Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation.

Riglar DT, Giessen TW, Baym M, Kerns SJ, Niederhuber MJ, Bronson RT, Kotula JW, Gerber GK, Way JC, Silver PA.

Nat Biotechnol. 2017 Jul;35(7):653-658. doi: 10.1038/nbt.3879. Epub 2017 May 29.

3.

Barcode extension for analysis and reconstruction of structures.

Myhrvold C, Baym M, Hanikel N, Ong LL, Gootenberg JS, Yin P.

Nat Commun. 2017 Mar 13;8:14698. doi: 10.1038/ncomms14698.

4.

Rapid construction of a whole-genome transposon insertion collection for Shewanella oneidensis by Knockout Sudoku.

Baym M, Shaket L, Anzai IA, Adesina O, Barstow B.

Nat Commun. 2016 Nov 10;7:13270. doi: 10.1038/ncomms13270.

5.

Compounds that select against the tetracycline-resistance efflux pump.

Stone LK, Baym M, Lieberman TD, Chait R, Clardy J, Kishony R.

Nat Chem Biol. 2016 Nov;12(11):902-904. doi: 10.1038/nchembio.2176. Epub 2016 Sep 19.

6.

Spatiotemporal microbial evolution on antibiotic landscapes.

Baym M, Lieberman TD, Kelsic ED, Chait R, Gross R, Yelin I, Kishony R.

Science. 2016 Sep 9;353(6304):1147-51. doi: 10.1126/science.aag0822.

7.

Multidrug evolutionary strategies to reverse antibiotic resistance.

Baym M, Stone LK, Kishony R.

Science. 2016 Jan 1;351(6268):aad3292. doi: 10.1126/science.aad3292. Review.

8.

Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes.

Palmer AC, Toprak E, Baym M, Kim S, Veres A, Bershtein S, Kishony R.

Nat Commun. 2015 Jun 10;6:7385. doi: 10.1038/ncomms8385.

9.

Inexpensive multiplexed library preparation for megabase-sized genomes.

Baym M, Kryazhimskiy S, Lieberman TD, Chung H, Desai MM, Kishony R.

PLoS One. 2015 May 22;10(5):e0128036. doi: 10.1371/journal.pone.0128036. eCollection 2015. Erratum in: PLoS One. 2015;10(6):e0131262.

10.

The Separatrix Algorithm for synthesis and analysis of stochastic simulations with applications in disease modeling.

Klein DJ, Baym M, Eckhoff P.

PLoS One. 2014 Jul 31;9(7):e103467. doi: 10.1371/journal.pone.0103467. eCollection 2014.

11.

Compressive genomics for protein databases.

Daniels NM, Gallant A, Peng J, Cowen LJ, Baym M, Berger B.

Bioinformatics. 2013 Jul 1;29(13):i283-90. doi: 10.1093/bioinformatics/btt214.

12.

Compressive genomics.

Loh PR, Baym M, Berger B.

Nat Biotechnol. 2012 Jul 10;30(7):627-30. doi: 10.1038/nbt.2241. No abstract available.

PMID:
22781691
13.

IsoBase: a database of functionally related proteins across PPI networks.

Park D, Singh R, Baym M, Liao CS, Berger B.

Nucleic Acids Res. 2011 Jan;39(Database issue):D295-300. doi: 10.1093/nar/gkq1234.

14.

Large-scale identification of genetic design strategies using local search.

Lun DS, Rockwell G, Guido NJ, Baym M, Kelner JA, Berger B, Galagan JE, Church GM.

Mol Syst Biol. 2009;5:296. doi: 10.1038/msb.2009.57. Epub 2009 Aug 18.

15.

IsoRankN: spectral methods for global alignment of multiple protein networks.

Liao CS, Lu K, Baym M, Singh R, Berger B.

Bioinformatics. 2009 Jun 15;25(12):i253-8. doi: 10.1093/bioinformatics/btp203.

16.

Conserved quantities and adaptation to the edge of chaos.

Baym M, Hübler AW.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 May;73(5 Pt 2):056210. Epub 2006 May 26.

PMID:
16803029

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