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INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalisation response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.).

Taylor CM, Kamphuis LG, Zhang W, Garg G, Berger JD, Mousavi-Derazmahalleh M, Bayer PE, Edwards D, Singh KB, Cowling WA, Nelson MN.

Plant Cell Environ. 2018 Apr 20. doi: 10.1111/pce.13320. [Epub ahead of print]


Adapting legume crops to climate change using genomic approaches.

Mousavi-Derazmahalleh M, Bayer PE, Hane JK, Babu V, Nguyen HT, Nelson MN, Erskine W, Varshney RK, Papa R, Edwards D.

Plant Cell Environ. 2018 Mar 30. doi: 10.1111/pce.13203. [Epub ahead of print]


Assessing the environmental impacts of soil compaction in Life Cycle Assessment.

Stoessel F, Sonderegger T, Bayer P, Hellweg S.

Sci Total Environ. 2018 Feb 27;630:913-921. doi: 10.1016/j.scitotenv.2018.02.222. [Epub ahead of print]


Integrative Dermatology - The Use of Herbals and Nutritional Supplements to Treat Dermatological Conditions.

Tirant M, Lotti T, Gianfaldoni S, Tchernev G, Wollina U, Bayer P.

Open Access Maced J Med Sci. 2018 Jan 21;6(1):185-202. doi: 10.3889/oamjms.2018.041. eCollection 2018 Jan 25. Review.


Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin.

Mousavi-Derazmahalleh M, Bayer PE, Nevado B, Hurgobin B, Filatov D, Kilian A, Kamphuis LG, Singh KB, Berger JD, Hane JK, Edwards D, Erskine W, Nelson MN.

Theor Appl Genet. 2018 Apr;131(4):887-901. doi: 10.1007/s00122-017-3045-7. Epub 2018 Jan 20.


Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus.

Hurgobin B, Golicz AA, Bayer PE, Chan CK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D.

Plant Biotechnol J. 2017 Dec 4. doi: 10.1111/pbi.12867. [Epub ahead of print]


Disrupting glucose-6-phosphate isomerase fully suppresses the "Warburg effect" and activates OXPHOS with minimal impact on tumor growth except in hypoxia.

de Padua MC, Delodi G, Vučetić M, Durivault J, Vial V, Bayer P, Noleto GR, Mazure NM, Ždralević M, Pouysségur J.

Oncotarget. 2017 Sep 18;8(50):87623-87637. doi: 10.18632/oncotarget.21007. eCollection 2017 Oct 20.


Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.

Schneider MV, Griffin PC, Tyagi S, Flannery M, Dayalan S, Gladman S, Watson-Haigh N, Bayer PE, Charleston M, Cooke I, Cook R, Edwards RJ, Edwards D, Gorse D, McConville M, Powell D, Wilkins MR, Lonie A.

Brief Bioinform. 2017 Jun 30. doi: 10.1093/bib/bbx071. [Epub ahead of print]


Structure and function of the human parvulins Pin1 and Par14/17.

Matena A, Rehic E, Hönig D, Kamba B, Bayer P.

Biol Chem. 2018 Jan 26;399(2):101-125. doi: 10.1515/hsz-2017-0137. Review.


Climate Clever Clovers: New Paradigm to Reduce the Environmental Footprint of Ruminants by Breeding Low Methanogenic Forages Utilizing Haplotype Variation.

Kaur P, Appels R, Bayer PE, Keeble-Gagnere G, Wang J, Hirakawa H, Shirasawa K, Vercoe P, Stefanova K, Durmic Z, Nichols P, Revell C, Isobe SN, Edwards D, Erskine W.

Front Plant Sci. 2017 Sep 5;8:1463. doi: 10.3389/fpls.2017.01463. eCollection 2017.


BioNanoAnalyst: a visualisation tool to assess genome assembly quality using BioNano data.

Yuan Y, Bayer PE, Scheben A, Chan CK, Edwards D.

BMC Bioinformatics. 2017 Jun 30;18(1):323. doi: 10.1186/s12859-017-1735-4.


Decreased serum glicentin concentration in patients with severe and morbid obesity.

Raffort J, Panaïa-Ferrari P, Lareyre F, Blois M, Bayer P, Staccini P, Fénichel P, Chinetti G.

Ann Clin Biochem. 2018 Mar;55(2):198-204. doi: 10.1177/0004563217700172. Epub 2017 Jun 29.


runBNG: a software package for BioNano genomic analysis on the command line.

Yuan Y, Bayer PE, Lee HT, Edwards D.

Bioinformatics. 2017 Oct 1;33(19):3107-3109. doi: 10.1093/bioinformatics/btx366.


Does basic energy access generate socioeconomic benefits? A field experiment with off-grid solar power in India.

Aklin M, Bayer P, Harish SP, Urpelainen J.

Sci Adv. 2017 May 17;3(5):e1602153. doi: 10.1126/sciadv.1602153. eCollection 2017 May.


The RxLR Motif of the Host Targeting Effector AVR3a of Phytophthora infestans Is Cleaved before Secretion.

Wawra S, Trusch F, Matena A, Apostolakis K, Linne U, Zhukov I, Stanek J, Koźmiński W, Davidson I, Secombes CJ, Bayer P, van West P.

Plant Cell. 2017 Jun;29(6):1184-1195. doi: 10.1105/tpc.16.00552. Epub 2017 May 18.


Assembly and comparison of two closely related Brassica napus genomes.

Bayer PE, Hurgobin B, Golicz AA, Chan CK, Yuan Y, Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King GJ, Batley J, Edwards D.

Plant Biotechnol J. 2017 Dec;15(12):1602-1610. doi: 10.1111/pbi.12742. Epub 2017 Jun 14.


Improvements in Genomic Technologies: Application to Crop Genomics.

Yuan Y, Bayer PE, Batley J, Edwards D.

Trends Biotechnol. 2017 Jun;35(6):547-558. doi: 10.1016/j.tibtech.2017.02.009. Epub 2017 Mar 9. Review.


The pangenome of hexaploid bread wheat.

Montenegro JD, Golicz AA, Bayer PE, Hurgobin B, Lee H, Chan CK, Visendi P, Lai K, Doležel J, Batley J, Edwards D.

Plant J. 2017 Jun;90(5):1007-1013. doi: 10.1111/tpj.13515. Epub 2017 Apr 5.


Genome-Wide Association Study of Genetic Control of Seed Fatty Acid Biosynthesis in Brassica napus.

Gacek K, Bayer PE, Bartkowiak-Broda I, Szala L, Bocianowski J, Edwards D, Batley J.

Front Plant Sci. 2017 Jan 20;7:2062. doi: 10.3389/fpls.2016.02062. eCollection 2016.


Identifying anthropogenic anomalies in air, surface and groundwater temperatures in Germany.

Benz SA, Bayer P, Blum P.

Sci Total Environ. 2017 Apr 15;584-585:145-153. doi: 10.1016/j.scitotenv.2017.01.139. Epub 2017 Jan 29.


An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance.

Kaur P, Bayer PE, Milec Z, Vrána J, Yuan Y, Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J.

Plant Biotechnol J. 2017 Aug;15(8):1034-1046. doi: 10.1111/pbi.12697. Epub 2017 Mar 23.


Fasting Circulating Glicentin Increases After Bariatric Surgery.

Raffort J, Panaïa-Ferrari P, Lareyre F, Bayer P, Staccini P, Fénichel P, Chinetti G.

Obes Surg. 2017 Jun;27(6):1581-1588. doi: 10.1007/s11695-016-2493-5.


Molecular tweezers target a protein-protein interface and thereby modulate complex formation.

Trusch F, Kowski K, Bravo-Rodriguez K, Beuck C, Sowislok A, Wettig B, Matena A, Sanchez-Garcia E, Meyer H, Schrader T, Bayer P.

Chem Commun (Camb). 2016 Dec 1;52(98):14141-14144.


The pangenome of an agronomically important crop plant Brassica oleracea.

Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D.

Nat Commun. 2016 Nov 11;7:13390. doi: 10.1038/ncomms13390.


A flow reactor setup for photochemistry of biphasic gas/liquid reactions.

Schachtner J, Bayer P, Jacobi von Wangelin A.

Beilstein J Org Chem. 2016 Aug 11;12:1798-1811. eCollection 2016.


A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.

Hane JK, Ming Y, Kamphuis LG, Nelson MN, Garg G, Atkins CA, Bayer PE, Bravo A, Bringans S, Cannon S, Edwards D, Foley R, Gao LL, Harrison MJ, Huang W, Hurgobin B, Li S, Liu CW, McGrath A, Morahan G, Murray J, Weller J, Jian J, Singh KB.

Plant Biotechnol J. 2017 Mar;15(3):318-330. doi: 10.1111/pbi.12615. Epub 2016 Sep 23.


Successful treatment of facial systemic lupus erythematosus lesions with Dr Michaels® (Soratinex®) product family. A case report.

Tirant M, Bayer P, Hercogovấ J, Fioranelli M, Gianfaldoni S, Chokoeva AA, Tchernev G, Wollina U, Novotny F, Roccia MG, Maximov GK, França K, Lotti T.

J Biol Regul Homeost Agents. 2016 Apr-Jun;30(2 Suppl 3):95-102.


Successful treatment of recalcitrant candidal intertrigo with Dr Michaels® (Fungatinex®) product family.

Hercogovấ J, Tirant M, Bayer P, Coburn M, Donnelly B, Kennedy T, Gaibor J, Arora M, Clews L, Fioranelli M, Gianfaldoni S, Chokoeva AA, Tchernev G, Wollina U, Novotny F, Roccia MG, Maximov GK, França K, Lotti T.

J Biol Regul Homeost Agents. 2016 Apr-Jun;30(2 Suppl 3):89-93.


Treatment of ichthyosis lamellaris using a series of herbal skin care products family.

Tirant M, Bayer P, Hercogovấ J, Fioranelli M, Gianfaldoni S, Chokoeva AA, Tchernev G, Wollina U, Novotny F, Roccia MG, Maximov GK, França K, Lotti T.

J Biol Regul Homeost Agents. 2016 Apr-Jun;30(2 Suppl 3):65-72.


Investigation of the efficacy and tolerability of Dr Michaels® (also branded as Eczitinex® and Itchinex Eczitinex®) topical products in the treatment of atopic dermatitis in children.

França K, Hercogovấ J, Fioranelli M, Gianfaldoni S, Chokoeva AA, Tchernev G, Wollina U, Tirant M, Bayer P, Coburn M, Anderson P, Donnelly B, Kennedy T, Gaibor J, Arora M, Clews L, Novotny F, Roccia MG, Maximov GK, Lotti T.

J Biol Regul Homeost Agents. 2016 Apr-Jun;30(2 Suppl 3):55-63.


Successful treatment of mild to moderate acne vulgaris with Dr Michaels® (also branded as Zitinex®) topical products family: a clinical trial.

Wollina U, Tirant M, Bayer P, Coburn M, Anderson P, Donnelly B, Kennedy T, Gaibor J, Arora M, Clews L, Walmsley S, Hercogovấ J, Fioranelli M, Gianfaldoni S, Chokoeva AA, Tchernev G, Novotny F, Roccia MG, Maximov GK, França K, Lotti T.

J Biol Regul Homeost Agents. 2016 Apr-Jun;30(2 Suppl 3):49-54.


Successful treatment of a chronic eczema in a 48-year-old female with Dr Michaels® (Eczitinex® and Itchinex®) product family. A case report.

Tirant M, Anderson P, Bayer P, Hercogovấ J, Fioranelli M, Gianfaldoni S, Chokoeva AA, Tchernev G, Wollina U, Novotny F, Roccia MG, Maximov GK, França K, Lotti T.

J Biol Regul Homeost Agents. 2016 Apr-Jun;30(2 Suppl 3):35-42.


The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

Lee H, Golicz AA, Bayer PE, Jiao Y, Tang H, Paterson AH, Sablok G, Krishnaraj RR, Chan CK, Batley J, Kendrick GA, Larkum AW, Ralph PJ, Edwards D.

Plant Physiol. 2016 Sep;172(1):272-83. doi: 10.1104/pp.16.00868. Epub 2016 Jul 3.


NmPin from the marine thaumarchaeote Nitrosopumilus maritimus is an active membrane associated prolyl isomerase.

Hoppstock L, Trusch F, Lederer C, van West P, Koenneke M, Bayer P.

BMC Biol. 2016 Jun 27;14:53. doi: 10.1186/s12915-016-0274-1.


Determinants of tyrosylprotein sulfation coding and substrate specificity of tyrosylprotein sulfotransferases in metazoans.

Hartmann-Fatu C, Bayer P.

Chem Biol Interact. 2016 Nov 25;259(Pt A):17-22. doi: 10.1016/j.cbi.2016.04.006. Epub 2016 Apr 7. Review.


Structural Characterization of the Loop at the Alpha-Subunit C-Terminus of the Mixed Lineage Leukemia Protein Activating Protease Taspase1.

van den Boom J, Trusch F, Hoppstock L, Beuck C, Bayer P.

PLoS One. 2016 Mar 14;11(3):e0151431. doi: 10.1371/journal.pone.0151431. eCollection 2016.


An efficient approach to BAC based assembly of complex genomes.

Visendi P, Berkman PJ, Hayashi S, Golicz AA, Bayer PE, Ruperao P, Hurgobin B, Montenegro J, Chan CK, Staňková H, Batley J, Šimková H, Doležel J, Edwards D.

Plant Methods. 2016 Jan 20;12:2. doi: 10.1186/s13007-016-0107-9. eCollection 2016.


Centromere Locations in Brassica A and C Genomes Revealed Through Half-Tetrad Analysis.

Mason AS, Rousseau-Gueutin M, Morice J, Bayer PE, Besharat N, Cousin A, Pradhan A, Parkin IA, Chèvre AM, Batley J, Nelson MN.

Genetics. 2016 Feb;202(2):513-23. doi: 10.1534/genetics.115.183210. Epub 2015 Nov 27.


Linking Surface Urban Heat Islands with Groundwater Temperatures.

Benz SA, Bayer P, Goettsche FM, Olesen FS, Blum P.

Environ Sci Technol. 2016 Jan 5;50(1):70-8. doi: 10.1021/acs.est.5b03672. Epub 2015 Dec 9.


The N-terminal Region of the Ubiquitin Regulatory X (UBX) Domain-containing Protein 1 (UBXD1) Modulates Interdomain Communication within the Valosin-containing Protein p97.

Trusch F, Matena A, Vuk M, Koerver L, Knævelsrud H, Freemont PS, Meyer H, Bayer P.

J Biol Chem. 2015 Dec 4;290(49):29414-27. doi: 10.1074/jbc.M115.680686. Epub 2015 Oct 16.


Backbone circularization of Bacillus subtilis family 11 xylanase increases its thermostability and its resistance against aggregation.

Waldhauer MC, Schmitz SN, Ahlmann-Eltze C, Gleixner JG, Schmelas CC, Huhn AG, Bunne C, Büscher M, Horn M, Klughammer N, Kreft J, Schäfer E, Bayer PA, Krämer SG, Neugebauer J, Wehler P, Mayer MP, Eils R, Di Ventura B.

Mol Biosyst. 2015 Dec;11(12):3231-43. doi: 10.1039/c5mb00341e.


Structural Model of the Bilitranslocase Transmembrane Domain Supported by NMR and FRET Data.

Roy Choudhury A, Sikorska E, van den Boom J, Bayer P, Popenda Ł, Szutkowski K, Jurga S, Bonomi M, Sali A, Zhukov I, Passamonti S, Novič M.

PLoS One. 2015 Aug 20;10(8):e0135455. doi: 10.1371/journal.pone.0135455. eCollection 2015.


High resolution multi-facies realizations of sedimentary reservoir and aquifer analogs.

Bayer P, Comunian A, Höyng D, Mariethoz G.

Sci Data. 2015 Jul 7;2:150033. doi: 10.1038/sdata.2015.33. eCollection 2015.


Spatial resolution of anthropogenic heat fluxes into urban aquifers.

Benz SA, Bayer P, Menberg K, Jung S, Blum P.

Sci Total Environ. 2015 Aug 15;524-525:427-39. doi: 10.1016/j.scitotenv.2015.04.003. Epub 2015 Apr 28.


High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus.

Bayer PE, Ruperao P, Mason AS, Stiller J, Chan CK, Hayashi S, Long Y, Meng J, Sutton T, Visendi P, Varshney RK, Batley J, Edwards D.

Theor Appl Genet. 2015 Jun;128(6):1039-47. doi: 10.1007/s00122-015-2488-y. Epub 2015 Mar 10.


Heterodimers of tyrosylprotein sulfotransferases suggest existence of a higher organization level of transferases in the membrane of the trans-Golgi apparatus.

Hartmann-Fatu C, Trusch F, Moll CN, Michin I, Hassinen A, Kellokumpu S, Bayer P.

J Mol Biol. 2015 Mar 27;427(6 Pt B):1404-1412. doi: 10.1016/j.jmb.2015.01.021. Epub 2015 Feb 7.


Cobalamin deficiency in the elderly: aetiology and management: a study of 125 patients in a geriatric hospital.

Couderc AL, Camalet J, Schneider S, Turpin JM, Bereder I, Boulahssass R, Gonfrier S, Bayer P, Guerin O, Brocker P.

J Nutr Health Aging. 2015 Feb;19(2):234-9. doi: 10.1007/s12603-014-0525-1.


Skim-based genotyping by sequencing.

Golicz AA, Bayer PE, Edwards D.

Methods Mol Biol. 2015;1245:257-70. doi: 10.1007/978-1-4939-1966-6_19.


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