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Items: 36

1.

PopHuman: the human population genomics browser.

Casillas S, Mulet R, Villegas-Mirón P, Hervas S, Sanz E, Velasco D, Bertranpetit J, Laayouni H, Barbadilla A.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1003-D1010. doi: 10.1093/nar/gkx943.

2.

Mapping Selection within Drosophila melanogaster Embryo's Anatomy.

Salvador-Martínez I, Coronado-Zamora M, Castellano D, Barbadilla A, Salazar-Ciudad I.

Mol Biol Evol. 2018 Jan 1;35(1):66-79. doi: 10.1093/molbev/msx266.

PMID:
29040697
3.

PopFly: the Drosophila population genomics browser.

Hervas S, Sanz E, Casillas S, Pool JE, Barbadilla A.

Bioinformatics. 2017 Sep 1;33(17):2779-2780. doi: 10.1093/bioinformatics/btx301.

PMID:
28472360
4.

Molecular Population Genetics.

Casillas S, Barbadilla A.

Genetics. 2017 Mar;205(3):1003-1035. doi: 10.1534/genetics.116.196493. Review.

5.

Genetic polymorphisms of FAS and EVER genes in a Greek population and their susceptibility to cervical cancer: a case control study.

Pavlidou E, Daponte A, Egea R, Dardiotis E, Hadjigeorgiou GM, Barbadilla A, Agorastos T.

BMC Cancer. 2016 Nov 29;16(1):923.

6.

Adaptive Evolution Is Substantially Impeded by Hill-Robertson Interference in Drosophila.

Castellano D, Coronado-Zamora M, Campos JL, Barbadilla A, Eyre-Walker A.

Mol Biol Evol. 2016 Feb;33(2):442-55. doi: 10.1093/molbev/msv236. Epub 2015 Oct 22.

7.

Genomics of ecological adaptation in cactophilic Drosophila.

Guillén Y, Rius N, Delprat A, Williford A, Muyas F, Puig M, Casillas S, Ràmia M, Egea R, Negre B, Mir G, Camps J, Moncunill V, Ruiz-Ruano FJ, Cabrero J, de Lima LG, Dias GB, Ruiz JC, Kapusta A, Garcia-Mas J, Gut M, Gut IG, Torrents D, Camacho JP, Kuhn GC, Feschotte C, Clark AG, Betrán E, Barbadilla A, Ruiz A.

Genome Biol Evol. 2014 Dec 31;7(1):349-66. doi: 10.1093/gbe/evu291.

8.

Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines.

Huang W, Massouras A, Inoue Y, Peiffer J, Ràmia M, Tarone AM, Turlapati L, Zichner T, Zhu D, Lyman RF, Magwire MM, Blankenburg K, Carbone MA, Chang K, Ellis LL, Fernandez S, Han Y, Highnam G, Hjelmen CE, Jack JR, Javaid M, Jayaseelan J, Kalra D, Lee S, Lewis L, Munidasa M, Ongeri F, Patel S, Perales L, Perez A, Pu L, Rollmann SM, Ruth R, Saada N, Warner C, Williams A, Wu YQ, Yamamoto A, Zhang Y, Zhu Y, Anholt RR, Korbel JO, Mittelman D, Muzny DM, Gibbs RA, Barbadilla A, Johnston JS, Stone EA, Richards S, Deplancke B, Mackay TF.

Genome Res. 2014 Jul;24(7):1193-208. doi: 10.1101/gr.171546.113. Epub 2014 Apr 8.

9.

InvFEST, a database integrating information of polymorphic inversions in the human genome.

Martínez-Fundichely A, Casillas S, Egea R, Ràmia M, Barbadilla A, Pantano L, Puig M, Cáceres M.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1027-32. doi: 10.1093/nar/gkt1122. Epub 2013 Nov 18.

10.

The Drosophila melanogaster Genetic Reference Panel.

Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, Carbone MA, Castellano D, Chaboub L, Duncan L, Harris Z, Javaid M, Jayaseelan JC, Jhangiani SN, Jordan KW, Lara F, Lawrence F, Lee SL, Librado P, Linheiro RS, Lyman RF, Mackey AJ, Munidasa M, Muzny DM, Nazareth L, Newsham I, Perales L, Pu LL, Qu C, Ràmia M, Reid JG, Rollmann SM, Rozas J, Saada N, Turlapati L, Worley KC, Wu YQ, Yamamoto A, Zhu Y, Bergman CM, Thornton KR, Mittelman D, Gibbs RA.

Nature. 2012 Feb 8;482(7384):173-8. doi: 10.1038/nature10811.

11.

PopDrowser: the Population Drosophila Browser.

Ràmia M, Librado P, Casillas S, Rozas J, Barbadilla A.

Bioinformatics. 2012 Feb 15;28(4):595-6. doi: 10.1093/bioinformatics/btr691. Epub 2011 Dec 15.

PMID:
22180410
12.

MASISH: a database for gene expression in maize seeds.

Miquel M, López-Ribera I, Ràmia M, Casillas S, Barbadilla A, Vicient CM.

Bioinformatics. 2011 Feb 1;27(3):435-6. doi: 10.1093/bioinformatics/btq654. Epub 2010 Dec 5.

PMID:
21134893
13.

The efficiency of purifying selection in Mammals vs. Drosophila for metabolic genes.

Petit N, Barbadilla A.

J Evol Biol. 2009 Oct;22(10):2118-24. doi: 10.1111/j.1420-9101.2009.01814.x. Epub 2009 Aug 20.

14.

Selection efficiency and effective population size in Drosophila species.

Petit N, Barbadilla A.

J Evol Biol. 2009 Mar;22(3):515-26. doi: 10.1111/j.1420-9101.2008.01672.x. Epub 2008 Dec 18.

15.

Drosophila polymorphism database (DPDB): a portal for nucleotide polymorphism in Drosophila.

Casillas S, Egea R, Petit N, Bergman CM, Barbadilla A.

Fly (Austin). 2007 Jul-Aug;1(4):205-11. Epub 2007 Jul 17.

PMID:
18820438
16.

Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites.

Egea R, Casillas S, Barbadilla A.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W157-62. doi: 10.1093/nar/gkn337. Epub 2008 May 30.

17.

Purifying selection maintains highly conserved noncoding sequences in Drosophila.

Casillas S, Barbadilla A, Bergman CM.

Mol Biol Evol. 2007 Oct;24(10):2222-34. Epub 2007 Jul 23.

PMID:
17646256
18.
19.

Fast sequence evolution of Hox and Hox-derived genes in the genus Drosophila.

Casillas S, Negre B, Barbadilla A, Ruiz A.

BMC Evol Biol. 2006 Dec 12;6:106.

20.

MamPol: a database of nucleotide polymorphism in the Mammalia class.

Egea R, Casillas S, Fernández E, Senar MA, Barbadilla A.

Nucleic Acids Res. 2007 Jan;35(Database issue):D624-9. Epub 2006 Nov 16.

21.

PDA v.2: improving the exploration and estimation of nucleotide polymorphism in large datasets of heterogeneous DNA.

Casillas S, Barbadilla A.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W632-4.

22.

DPDB: a database for the storage, representation and analysis of polymorphism in the Drosophila genus.

Casillas S, Petit N, Barbadilla A.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii26-30.

PMID:
16204116
23.

Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex.

Negre B, Casillas S, Suzanne M, Sánchez-Herrero E, Akam M, Nefedov M, Barbadilla A, de Jong P, Ruiz A.

Genome Res. 2005 May;15(5):692-700.

24.

PDA: a pipeline to explore and estimate polymorphism in large DNA databases.

Casillas S, Barbadilla A.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W166-9.

25.
26.

Recombination rate predicts inversion size in Diptera.

Cáceres M, Barbadilla A, Ruiz A.

Genetics. 1999 Sep;153(1):251-9.

27.

Generation of a widespread Drosophila inversion by a transposable element.

Cáceres M, Ranz JM, Barbadilla A, Long M, Ruiz A.

Science. 1999 Jul 16;285(5426):415-8.

28.

INVERSION LENGTH AND BREAKPOINT DISTRIBUTION IN THE DROSOPHILA BUZZATII SPECIES COMPLEX: IS INVERSION LENGTH A SELECTED TRAIT?

Cáceres M, Barbadilla A, Ruiz A.

Evolution. 1997 Aug;51(4):1149-1155. doi: 10.1111/j.1558-5646.1997.tb03962.x.

PMID:
28565492
29.

Recombination and gene flux caused by gene conversion and crossing over in inversion heterokaryotypes.

Navarro A, Betrán E, Barbadilla A, Ruiz A.

Genetics. 1997 Jun;146(2):695-709.

30.
31.

What does electrophoretic variation tell us about protein variation?

Barbadilla A, King LM, Lewontin RC.

Mol Biol Evol. 1996 Feb;13(2):427-32. No abstract available.

PMID:
8587507
33.

MATING PATTERN AND FITNESS-COMPONENT ANALYSIS ASSOCIATED WITH INVERSION POLYMORPHISM IN A NATURAL POPULATION OF DROSOPHILA BUZZATII.

Barbadilla A, Ruiz A, Santos M, Fontdevila A.

Evolution. 1994 Jun;48(3):767-780. doi: 10.1111/j.1558-5646.1994.tb01360.x.

PMID:
28568257
35.

Genetic variance for body size in a natural population of Drosophila buzzatii.

Ruiz A, Santos M, Barbadilla A, Quezada-Díaz JE, Hasson E, Fontdevila A.

Genetics. 1991 Aug;128(4):739-50.

36.

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