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Items: 1 to 50 of 147

1.

FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer-promoter map.

Hait TA, Amar D, Shamir R, Elkon R.

Genome Biol. 2018 May 1;19(1):56. doi: 10.1186/s13059-018-1432-2.

2.

Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.

Tikkanen E, Gustafsson S, Amar D, Shcherbina A, Waggott D, Ashley EA, Ingelsson E.

Sci Rep. 2018 Apr 24;8(1):6451. doi: 10.1038/s41598-018-24735-y.

3.

MorphDB: Prioritizing Genes for Specialized Metabolism Pathways and Gene Ontology Categories in Plants.

Zwaenepoel A, Diels T, Amar D, Van Parys T, Shamir R, Van de Peer Y, Tzfadia O.

Front Plant Sci. 2018 Mar 19;9:352. doi: 10.3389/fpls.2018.00352. eCollection 2018.

4.

ADEPTUS: A discovery tool for disease prediction, enrichment and network analysis based on profiles from many diseases.

Amar D, Vizel A, Levy C, Shamir R.

Bioinformatics. 2018 Jan 19. doi: 10.1093/bioinformatics/bty027. [Epub ahead of print]

PMID:
29360930
5.

In Response.

Amar D, Pedoto A, Desiderio DP.

Anesth Analg. 2018 Jan;126(1):367. doi: 10.1213/ANE.0000000000002607. No abstract available.

PMID:
29135591
6.

Heterogeneity in Body Contouring Outcomes Based Research: The Pittsburgh Body Contouring Complication Reporting System.

Guest RA, Amar D, Czerniak S, Dreifuss SE, Schusterman MA, Kenny EM, Chernoff EF, Barnett JM, Koesarie KR, Gusenoff JA.

Aesthet Surg J. 2017 Dec 13;38(1):60-70. doi: 10.1093/asj/sjx081. Review.

PMID:
29040346
7.

A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action.

Abadi S, Yan WX, Amar D, Mayrose I.

PLoS Comput Biol. 2017 Oct 16;13(10):e1005807. doi: 10.1371/journal.pcbi.1005807. eCollection 2017 Oct.

8.

Liposomal Bupivacaine for Intercostal Nerve Block: Pricey or Priceless?

Pedoto A, Amar D.

Semin Thorac Cardiovasc Surg. 2017 Winter;29(4):538-539. doi: 10.1053/j.semtcvs.2017.08.016. Epub 2017 Aug 30. No abstract available.

PMID:
28967536
9.

Analysis of blood-based gene expression in idiopathic Parkinson disease.

Shamir R, Klein C, Amar D, Vollstedt EJ, Bonin M, Usenovic M, Wong YC, Maver A, Poths S, Safer H, Corvol JC, Lesage S, Lavi O, Deuschl G, Kuhlenbaeumer G, Pawlack H, Ulitsky I, Kasten M, Riess O, Brice A, Peterlin B, Krainc D.

Neurology. 2017 Oct 17;89(16):1676-1683. doi: 10.1212/WNL.0000000000004516. Epub 2017 Sep 15.

PMID:
28916538
10.

Longitudinal two-dimensional strain for the diagnosis of left ventricular segmental dysfunction in patients with acute myocardial infarction.

Eitan A, Kehat I, Mutlak D, Lichtenberg G, Amar D, Agmon Y.

Int J Cardiovasc Imaging. 2018 Feb;34(2):237-249. doi: 10.1007/s10554-017-1231-y. Epub 2017 Aug 20.

PMID:
28825162
11.

Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate.

Amar D, Shamir R, Yekutieli D.

PLoS Comput Biol. 2017 Aug 18;13(8):e1005700. doi: 10.1371/journal.pcbi.1005700. eCollection 2017 Aug.

12.

Benefit of the UltraZoom beamforming technology in noise in cochlear implant users.

Mosnier I, Mathias N, Flament J, Amar D, Liagre-Callies A, Borel S, Ambert-Dahan E, Sterkers O, Bernardeschi D.

Eur Arch Otorhinolaryngol. 2017 Sep;274(9):3335-3342. doi: 10.1007/s00405-017-4651-3. Epub 2017 Jun 29.

PMID:
28664331
13.

Protective Lung Ventilation and Morbidity After Pulmonary Resection: A Propensity Score-Matched Analysis.

Amar D, Zhang H, Pedoto A, Desiderio DP, Shi W, Tan KS.

Anesth Analg. 2017 Jul;125(1):190-199. doi: 10.1213/ANE.0000000000002151.

PMID:
28598916
14.

The Challenges of Augmentation Mastopexy in the Massive Weight Loss Patient: Technical Considerations.

Coombs DM, Srivastava U, Amar D, Rubin JP, Gusenoff JA.

Plast Reconstr Surg. 2017 May;139(5):1090-1099. doi: 10.1097/PRS.0000000000003294.

PMID:
28445357
16.

Utilizing somatic mutation data from numerous studies for cancer research: proof of concept and applications.

Amar D, Izraeli S, Shamir R.

Oncogene. 2017 Jun 15;36(24):3375-3383. doi: 10.1038/onc.2016.489. Epub 2017 Jan 16.

17.

Clinical phenotypes and outcomes of heritable and sporadic pulmonary veno-occlusive disease: a population-based study.

Montani D, Girerd B, Jaïs X, Levy M, Amar D, Savale L, Dorfmüller P, Seferian A, Lau EM, Eyries M, Le Pavec J, Parent F, Bonnet D, Soubrier F, Fadel E, Sitbon O, Simonneau G, Humbert M.

Lancet Respir Med. 2017 Feb;5(2):125-134. doi: 10.1016/S2213-2600(16)30438-6. Epub 2017 Jan 11.

PMID:
28087362
18.

Neutrophil-lymphocyte ratio and risk of atrial fibrillation after thoracic surgery.

Walsh KJ, Tan KS, Zhang H, Amar D.

Interact Cardiovasc Thorac Surg. 2017 Apr 1;24(4):555-559. doi: 10.1093/icvts/ivw417.

PMID:
28073987
19.

Preoperative Echocardiographic Indices of Diastolic Dysfunction and Brain Natriuretic Peptide in Predicting Postoperative Atrial Fibrillation After Noncardiac Surgery.

Brecher O, Gulati H, Roistacher N, Zhang H, Shi W, Thaler HT, Amar D.

Anesth Analg. 2017 Apr;124(4):1099-1104. doi: 10.1213/ANE.0000000000001471.

PMID:
27918330
20.

Hemodynamic Instability Following Airway Spray Cryotherapy.

Pedoto A, Desiderio DP, Amar D, Downey RJ.

Anesth Analg. 2016 Nov;123(5):1302-1306.

21.

Segmental Lung Isolation in a Postpneumonectomy Patient Undergoing Contralateral Lung Resection.

Walsh K, Park B, Amar D.

J Cardiothorac Vasc Anesth. 2017 Jun;31(3):1048-1050. doi: 10.1053/j.jvca.2016.07.034. Epub 2016 Jul 28. No abstract available.

PMID:
27720492
22.

RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results.

Maron-Katz A, Amar D, Simon EB, Hendler T, Shamir R.

PLoS One. 2016 Jul 25;11(7):e0159643. doi: 10.1371/journal.pone.0159643. eCollection 2016.

23.

Lung capillary blood volume and membrane diffusion in precapillary pulmonary hypertension.

Godinas L, Amar D, Montani D, Lau EM, Jaïs X, Savale L, Jevnikar M, Sitbon O, Simonneau G, Humbert M, Laveneziana P, Garcia G.

J Heart Lung Transplant. 2016 May;35(5):647-56. doi: 10.1016/j.healun.2015.12.022. Epub 2016 Jan 6.

PMID:
26987595
24.

Enhancer methylation dynamics contribute to cancer plasticity and patient mortality.

Bell RE, Golan T, Sheinboim D, Malcov H, Amar D, Salamon A, Liron T, Gelfman S, Gabet Y, Shamir R, Levy C.

Genome Res. 2016 May;26(5):601-11. doi: 10.1101/gr.197194.115. Epub 2016 Feb 23.

25.

Evidence of TAF1 dysfunction in peripheral models of X-linked dystonia-parkinsonism.

Domingo A, Amar D, Grütz K, Lee LV, Rosales R, Brüggemann N, Jamora RD, Cutiongco-Dela Paz E, Rolfs A, Dressler D, Walter U, Krainc D, Lohmann K, Shamir R, Klein C, Westenberger A.

Cell Mol Life Sci. 2016 Aug;73(16):3205-15. doi: 10.1007/s00018-016-2159-4. Epub 2016 Feb 15.

PMID:
26879577
26.

Comparative Safety and Tolerability of Prostacyclins in Pulmonary Hypertension.

O'Connell C, Amar D, Boucly A, Savale L, Jaïs X, Chaumais MC, Montani D, Humbert M, Simonneau G, Sitbon O.

Drug Saf. 2016 Apr;39(4):287-94. doi: 10.1007/s40264-015-0365-x. Review.

PMID:
26748508
27.

Pulmonary Hypertension Complicating Fibrosing Mediastinitis.

Seferian A, Steriade A, Jaïs X, Planché O, Savale L, Parent F, Amar D, Jovan R, Fadel E, Sitbon O, Simonneau G, Humbert M, Montani D.

Medicine (Baltimore). 2015 Nov;94(44):e1800. doi: 10.1097/MD.0000000000001800. Erratum in: Medicine (Baltimore). 2016 Jan;95(1):1.

28.

Postoperative atrial fibrillation: Is there a need for prevention?

Amar D.

J Thorac Cardiovasc Surg. 2016 Apr;151(4):913-5. doi: 10.1016/j.jtcvs.2015.09.041. Epub 2015 Sep 18. No abstract available.

29.

New pharmacotherapy options for pulmonary arterial hypertension.

Perrin S, Chaumais MC, O'Connell C, Amar D, Savale L, Jaïs X, Montani D, Humbert M, Simonneau G, Sitbon O.

Expert Opin Pharmacother. 2015;16(14):2113-31. doi: 10.1517/14656566.2015.1074177. Epub 2015 Aug 12. Review.

PMID:
26290279
30.

Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets.

Amar D, Hait T, Izraeli S, Shamir R.

Nucleic Acids Res. 2015 Sep 18;43(16):7779-89. doi: 10.1093/nar/gkv810. Epub 2015 Aug 10.

31.

A hierarchical Bayesian model for flexible module discovery in three-way time-series data.

Amar D, Yekutieli D, Maron-Katz A, Hendler T, Shamir R.

Bioinformatics. 2015 Jun 15;31(12):i17-26. doi: 10.1093/bioinformatics/btv228.

32.

Atypical vasculitis mimicking chronic thromboembolic pulmonary hypertension.

Dion J, Terrier B, Jaïs X, Mehdaoui A, Sattler C, Amar D, Cohen P, Guillevin L, Mouthon L; French Vasculitis Study Group (FVSG).

Am J Med. 2015 Oct;128(10):e47-9. doi: 10.1016/j.amjmed.2015.05.028. Epub 2015 Jun 10. No abstract available.

PMID:
26071824
33.

Giant solitary trichoepithelioma.

Teli B, Thrishuli PB, Santhosh R, Amar DN, Rajpurohit S.

South Asian J Cancer. 2015 Jan-Mar;4(1):41-4. doi: 10.4103/2278-330X.149951. Review.

34.

The MORPH-R web server and software tool for predicting missing genes in biological pathways.

Amar D, Frades I, Diels T, Zaltzman D, Ghatan N, Hedley PE, Alexandersson E, Tzfadia O, Shamir R.

Physiol Plant. 2015 Sep;155(1):12-20. doi: 10.1111/ppl.12326. Epub 2015 Feb 24.

PMID:
25625434
35.

Beneficial effects of perioperative statins for major pulmonary resection.

Amar D, Park B, Zhang H, Shi W, Fleisher M, Thaler HT, Rusch VW.

J Thorac Cardiovasc Surg. 2015 Jun;149(6):1532-8. doi: 10.1016/j.jtcvs.2014.12.016. Epub 2014 Dec 18.

36.

Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case.

Amar D, Frades I, Danek A, Goldberg T, Sharma SK, Hedley PE, Proux-Wera E, Andreasson E, Shamir R, Tzfadia O, Alexandersson E.

BMC Plant Biol. 2014 Dec 5;14:329. doi: 10.1186/s12870-014-0329-9.

37.

Association of anesthesia technique for radical prostatectomy with biochemical recurrence: a retrospective cohort study.

Ehdaie B, Sjoberg DD, Dalecki PH, Scardino PT, Eastham JA, Amar D.

Can J Anaesth. 2014 Dec;61(12):1068-74. doi: 10.1007/s12630-014-0221-y. Epub 2014 Aug 21.

PMID:
25141832
38.

2014 AATS guidelines for the prevention and management of perioperative atrial fibrillation and flutter for thoracic surgical procedures.

Frendl G, Sodickson AC, Chung MK, Waldo AL, Gersh BJ, Tisdale JE, Calkins H, Aranki S, Kaneko T, Cassivi S, Smith SC Jr, Darbar D, Wee JO, Waddell TK, Amar D, Adler D; American Association for Thoracic Surgery.

J Thorac Cardiovasc Surg. 2014 Sep;148(3):e153-93. doi: 10.1016/j.jtcvs.2014.06.036. Epub 2014 Jun 30. Review. No abstract available.

39.

2014 AATS guidelines for the prevention and management of perioperative atrial fibrillation and flutter for thoracic surgical procedures. Executive summary.

Frendl G, Sodickson AC, Chung MK, Waldo AL, Gersh BJ, Tisdale JE, Calkins H, Aranki S, Kaneko T, Cassivi S, Smith SC Jr, Darbar D, Wee JO, Waddell TK, Amar D, Adler D; American Association of Thoracic Surgery.

J Thorac Cardiovasc Surg. 2014 Sep;148(3):772-91. doi: 10.1016/j.jtcvs.2014.06.037. Epub 2014 Jun 28. Review. No abstract available.

40.

Constructing module maps for integrated analysis of heterogeneous biological networks.

Amar D, Shamir R.

Nucleic Acids Res. 2014 Apr;42(7):4208-19. doi: 10.1093/nar/gku102. Epub 2014 Feb 4.

41.

Periorbital reconstruction with the expanded pedicled forehead flap.

Margulis A, Amar D, Billig A, Adler N.

Ann Plast Surg. 2015 Mar;74(3):313-7. doi: 10.1097/SAP.0b013e3182978a29.

PMID:
23903078
42.

Employing directed evolution for the functional analysis of multi-specific proteins.

Levin M, Amar D, Aharoni A.

Bioorg Med Chem. 2013 Jun 15;21(12):3511-6. doi: 10.1016/j.bmc.2013.04.052. Epub 2013 Apr 27. Review.

PMID:
23683833
43.

Dissection of regulatory networks that are altered in disease via differential co-expression.

Amar D, Safer H, Shamir R.

PLoS Comput Biol. 2013;9(3):e1002955. doi: 10.1371/journal.pcbi.1002955. Epub 2013 Mar 7.

44.

The MORPH algorithm: ranking candidate genes for membership in Arabidopsis and tomato pathways.

Tzfadia O, Amar D, Bradbury LM, Wurtzel ET, Shamir R.

Plant Cell. 2012 Nov;24(11):4389-406. doi: 10.1105/tpc.112.104513. Epub 2012 Nov 30.

45.

Brain natriuretic peptide and risk of atrial fibrillation after thoracic surgery.

Amar D, Zhang H, Shi W, Downey RJ, Bains MS, Park BJ, Flores R, Rizk N, Thaler HT, Rusch VW.

J Thorac Cardiovasc Surg. 2012 Nov;144(5):1249-53. doi: 10.1016/j.jtcvs.2012.06.051. Epub 2012 Jul 25.

46.

Infection of tissue expander with Candida parapsilosis.

Lavi E, Billig A, Amar D, Neuman R, Margulis A, Tzur T.

Eplasty. 2012;12:ic7. Epub 2012 May 22. No abstract available.

47.

Transcriptional and proteomic analysis of the Aspergillus fumigatus ΔprtT protease-deficient mutant.

Hagag S, Kubitschek-Barreira P, Neves GW, Amar D, Nierman W, Shalit I, Shamir R, Lopes-Bezerra L, Osherov N.

PLoS One. 2012;7(4):e33604. doi: 10.1371/journal.pone.0033604. Epub 2012 Apr 13.

48.

The transition of human estrogen sulfotransferase from generalist to specialist using directed enzyme evolution.

Amar D, Berger I, Amara N, Tafa G, Meijler MM, Aharoni A.

J Mol Biol. 2012 Feb 10;416(1):21-32. doi: 10.1016/j.jmb.2011.12.013. Epub 2011 Dec 13.

PMID:
22197379
49.

The molecular basis for the broad substrate specificity of human sulfotransferase 1A1.

Berger I, Guttman C, Amar D, Zarivach R, Aharoni A.

PLoS One. 2011;6(11):e26794. doi: 10.1371/journal.pone.0026794. Epub 2011 Nov 1.

50.

Transesophageal endoscopic myotomy for achalasia: recognizing potential pitfalls before clinical application.

Abu Gazala M, Khalaila A, Shussman N, Abu Gazala S, Elazary R, Amar D, Kushnir D, Ponomernco O, Zamir G, Rivkind AI, Mintz Y.

Surg Endosc. 2012 Mar;26(3):681-7. doi: 10.1007/s00464-011-1937-1. Epub 2011 Oct 13.

PMID:
21993936

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