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Impact of Dietary Galacto-Oligosaccharide (GOS) on Chicken's Gut Microbiota, Mucosal Gene Expression, and Salmonella Colonization.

Hughes RA, Ali RA, Mendoza MA, Hassan HM, Koci MD.

Front Vet Sci. 2017 Nov 13;4:192. doi: 10.3389/fvets.2017.00192. eCollection 2017.


Efficacy of feed additives to reduce the effect of naturally occurring mycotoxins fed to turkey hen poults reared to 6 weeks of age.

Tilley JEN, Grimes JL, Koci MD, Ali RA, Stark CR, Nighot PK, Middleton TF, Fahrenholz AC.

Poult Sci. 2017 Dec 1;96(12):4236-4244. doi: 10.3382/ps/pex214.


RAZA: A Rapid 3D z-crossings algorithm to segment electron tomograms and extract organelles and macromolecules.

Ali RA, Mehdi AM, Rothnagel R, Hamilton NA, Gerle C, Landsberg MJ, Hankamer B.

J Struct Biol. 2017 Nov;200(2):73-86. doi: 10.1016/j.jsb.2017.10.002. Epub 2017 Oct 13.


Environmental triggers in IBD: a review of progress and evidence.

Ananthakrishnan AN, Bernstein CN, Iliopoulos D, Macpherson A, Neurath MF, Ali RAR, Vavricka SR, Fiocchi C.

Nat Rev Gastroenterol Hepatol. 2018 Jan;15(1):39-49. doi: 10.1038/nrgastro.2017.136. Epub 2017 Oct 11. Review.


Activated signature of antiphospholipid syndrome neutrophils reveals potential therapeutic target.

Knight JS, Meng H, Coit P, Yalavarthi S, Sule G, Gandhi AA, Grenn RC, Mazza LF, Ali RA, Renauer P, Wren JD, Bockenstedt PL, Wang H, Eitzman DT, Sawalha AH.

JCI Insight. 2017 Sep 21;2(18). pii: 93897. doi: 10.1172/jci.insight.93897. [Epub ahead of print]


Primary Breast Lymphoma: A Case Report and Review of the Literature.

Mohamed KEH, Ali RAE.

Clin Pract. 2017 Aug 3;7(3):939. doi: 10.4081/cp.2017.939. eCollection 2017 Jun 7.


Maternal Sociodemographic Characteristics and Behaviors as Correlates of Preadolescent's Breakfast Habits.

Ali RA, Abdel Razeq NM, Alnuaimi KM, Alzoubi FA.

J Pediatr Nurs. 2017 Aug 9. pii: S0882-5963(17)30257-9. doi: 10.1016/j.pedn.2017.08.019. [Epub ahead of print]


The firing characteristics of foot sole cutaneous mechanoreceptor afferents in response to vibration stimuli.

Strzalkowski NDJ, Ali RA, Bent LR.

J Neurophysiol. 2017 Oct 1;118(4):1931-1942. doi: 10.1152/jn.00647.2016. Epub 2017 Jul 5.


Mothers' knowledge & perception about child sexual abuse in Jordan.

Alzoubi FA, Ali RA, Flah IH, Alnatour A.

Child Abuse Negl. 2018 Jan;75:149-158. doi: 10.1016/j.chiabu.2017.06.006. Epub 2017 Jun 9.


Prediction of milk fatty acid content with mid-infrared spectroscopy in Canadian dairy cattle using differently distributed model development sets.

Fleming A, Schenkel FS, Chen J, Malchiodi F, Bonfatti V, Ali RA, Mallard B, Corredig M, Miglior F.

J Dairy Sci. 2017 Jun;100(6):5073-5081. doi: 10.3168/jds.2016-12102. Epub 2017 Apr 21.


Malignant syphilis: ostraceous, ulceronecrotic lesions in a patient with human immunodeficiency virus.

Mohan GC, Ali RA, Isache CL, Sharma RK, Perniciaro C.

Dermatol Online J. 2017 Jan 15;23(1). pii: 13030/qt3ps899bh.


Heritabilities of measured and mid-infrared predicted milk fat globule size, milk fat and protein percentages, and their genetic correlations.

Fleming A, Schenkel FS, Koeck A, Malchiodi F, Ali RA, Corredig M, Mallard B, Sargolzaei M, Miglior F.

J Dairy Sci. 2017 May;100(5):3735-3741. doi: 10.3168/jds.2016-12243. Epub 2017 Mar 16.


Cancer and Thrombosis: The Platelet Perspective.

Meikle CK, Kelly CA, Garg P, Wuescher LM, Ali RA, Worth RG.

Front Cell Dev Biol. 2017 Jan 5;4:147. doi: 10.3389/fcell.2016.00147. eCollection 2016. Review.


Variation in fat globule size in bovine milk and its prediction using mid-infrared spectroscopy.

Fleming A, Schenkel FS, Chen J, Malchiodi F, Ali RA, Mallard B, Sargolzaei M, Corredig M, Miglior F.

J Dairy Sci. 2017 Mar;100(3):1640-1649. doi: 10.3168/jds.2016-11427. Epub 2017 Jan 11.


Extraintestinal Manifestations of Pediatric Inflammatory Bowel Disease: Prevalence, Presentation, and Anti-TNF Treatment.

Greuter T, Bertoldo F, Rechner R, Straumann A, Biedermann L, Zeitz J, Misselwitz B, Scharl M, Rogler G, Safroneeva E, Ali RAR, Braegger C, Heyland K, Mueller P, Nydegger A, Petit LM, Schibli S, Furlano RI, Spalinger J, Schäppi M, Zamora S, Froehlich F, Herzog D, Schoepfer AM, Vavricka SR; Swiss IBD Cohort Study Group.

J Pediatr Gastroenterol Nutr. 2017 Aug;65(2):200-206. doi: 10.1097/MPG.0000000000001455.


Conventional versus Doxorubicin-Eluting Beads Transarterial Chemoembolization for Unresectable Hepatocellular Carcinoma: a Tertiary Medical Centre Experience in Malaysia.

Rahman FA, Naidu J, Ngiu CS, Yaakob Y, Mohamed Z, Othman H, Jarmin R, Elias MH, Hamid NA, Mokhtar NM, Ali RR.

Asian Pac J Cancer Prev. 2016;17(8):4037-41.


Metastatic Clear Cell Renal Cell Carcinoma Presenting with a Gingival Metastasis.

Ali RA, Mohamed KE.

Clin Pract. 2016 Jun 10;6(2):847. doi: 10.4081/cp.2016.847. eCollection 2016 Apr 26.


Evaluation of exposure of pemphigus vulgaris patients to Mycobacterium tuberculosis and Aspergillus fumigatus.

Ali RA, Elsherif RH, Saleh MA, Ismail MH.

Eur J Clin Microbiol Infect Dis. 2016 Nov;35(11):1749-1752. Epub 2016 Jul 11.


Development of the Chick Microbiome: How Early Exposure Influences Future Microbial Diversity.

Ballou AL, Ali RA, Mendoza MA, Ellis JC, Hassan HM, Croom WJ, Koci MD.

Front Vet Sci. 2016 Jan 20;3:2. doi: 10.3389/fvets.2016.00002. eCollection 2016.


Autosomal-Recessive Hearing Impairment Due to Rare Missense Variants within S1PR2.

Santos-Cortez RL, Faridi R, Rehman AU, Lee K, Ansar M, Wang X, Morell RJ, Isaacson R, Belyantseva IA, Dai H, Acharya A, Qaiser TA, Muhammad D, Ali RA, Shams S, Hassan MJ, Shahzad S, Raza SI, Bashir ZE, Smith JD, Nickerson DA, Bamshad MJ; University of Washington Center for Mendelian Genomics, Riazuddin S, Ahmad W, Friedman TB, Leal SM.

Am J Hum Genet. 2016 Feb 4;98(2):331-8. doi: 10.1016/j.ajhg.2015.12.004. Epub 2016 Jan 21.


Nicotinic Acid Adenine Dinucleotide Phosphate Plays a Critical Role in Naive and Effector Murine T Cells but Not Natural Regulatory T Cells.

Ali RA, Camick C, Wiles K, Walseth TF, Slama JT, Bhattacharya S, Giovannucci DR, Wall KA.

J Biol Chem. 2016 Feb 26;291(9):4503-22. doi: 10.1074/jbc.M115.681833. Epub 2016 Jan 4.


A novel association between IL1-Ra (receptor antagonist) gene polymorphism and T1DM in Al-Madina Al-Mounawra.

Ali RA, Saber LM, Al-Harbi AM.

Eur Rev Med Pharmacol Sci. 2015 Oct;19(19):3701-8.


Thyroid hormones: Possible roles in epilepsy pathology.

Tamijani SM, Karimi B, Amini E, Golpich M, Dargahi L, Ali RA, Ibrahim NM, Mohamed Z, Ghasemi R, Ahmadiani A.

Seizure. 2015 Sep;31:155-64. doi: 10.1016/j.seizure.2015.07.021. Epub 2015 Aug 4. Review.


The positive influences of increasing age at diagnosis of inflammatory bowel disease on disease prognostication in asian perspective.

Ali RA.

Intest Res. 2015 Jan;13(1):4-5. doi: 10.5217/ir.2015.13.1.4. Epub 2015 Jan 29. No abstract available.


Platelets: essential components of the immune system.

Ali RA, Wuescher LM, Worth RG.

Curr Trends Immunol. 2015;16:65-78.


Genetic variation within the Mx gene of commercially selected chicken lines reveals multiple haplotypes, recombination and a protein under selection pressure.

Fulton JE, Arango J, Ali RA, Bohorquez EB, Lund AR, Ashwell CM, Settar P, O'Sullivan NP, Koci MD.

PLoS One. 2014 Sep 22;9(9):e108054. doi: 10.1371/journal.pone.0108054. eCollection 2014.


Fetal endoscopic tracheal occlusion for congenital diaphragmatic hernia: indications, outcomes, and future directions.

Ruano R, Ali RA, Patel P, Cass D, Olutoye O, Belfort MA.

Obstet Gynecol Surv. 2014 Mar;69(3):147-58. doi: 10.1097/OGX.0000000000000045. Review.


Glutathione S-transferase gene polymorphisms (GSTM1, GSTT1, and GSTP1) in Egyptian pediatric patients with sickle cell disease.

Shiba HF, El-Ghamrawy MK, Shaheen IA, Ali RA, Mousa SM.

Pediatr Dev Pathol. 2014 Jul-Aug;17(4):265-70. doi: 10.2350/14-03-1452-OA.1. Epub 2014 May 19.


Activity of nicotinic acid substituted nicotinic acid adenine dinucleotide phosphate (NAADP) analogs in a human cell line: difference in specificity between human and sea urchin NAADP receptors.

Ali RA, Zhelay T, Trabbic CJ, Walseth TF, Slama JT, Giovannucci DR, Wall KA.

Cell Calcium. 2014 Feb;55(2):93-103. doi: 10.1016/j.ceca.2013.12.004. Epub 2013 Dec 28.


Mutations in TBC1D24, a gene associated with epilepsy, also cause nonsyndromic deafness DFNB86.

Rehman AU, Santos-Cortez RL, Morell RJ, Drummond MC, Ito T, Lee K, Khan AA, Basra MA, Wasif N, Ayub M, Ali RA, Raza SI; University of Washington Center for Mendelian Genomics, Nickerson DA, Shendure J, Bamshad M, Riazuddin S, Billington N, Khan SN, Friedman PL, Griffith AJ, Ahmad W, Riazuddin S, Leal SM, Friedman TB.

Am J Hum Genet. 2014 Jan 2;94(1):144-52. doi: 10.1016/j.ajhg.2013.12.004.


On computing standard errors for marginal structural Cox models.

Ali RA, Ali MA, Wei Z.

Lifetime Data Anal. 2014 Jan;20(1):106-31. doi: 10.1007/s10985-013-9255-7. Epub 2013 Apr 18.


Fungal transformation of cedryl acetate and α-glucosidase inhibition assay, quantum mechanical calculations and molecular docking studies of its metabolites.

Sultan S, Choudhary MI, Khan SN, Fatima U, Atif M, Ali RA, Rahman AU, Fatmi MQ.

Eur J Med Chem. 2013 Apr;62:764-70. doi: 10.1016/j.ejmech.2013.01.036. Epub 2013 Feb 8.


Alterations of the CIB2 calcium- and integrin-binding protein cause Usher syndrome type 1J and nonsyndromic deafness DFNB48.

Riazuddin S, Belyantseva IA, Giese AP, Lee K, Indzhykulian AA, Nandamuri SP, Yousaf R, Sinha GP, Lee S, Terrell D, Hegde RS, Ali RA, Anwar S, Andrade-Elizondo PB, Sirmaci A, Parise LV, Basit S, Wali A, Ayub M, Ansar M, Ahmad W, Khan SN, Akram J, Tekin M, Riazuddin S, Cook T, Buschbeck EK, Frolenkov GI, Leal SM, Friedman TB, Ahmed ZM.

Nat Genet. 2012 Nov;44(11):1265-71. doi: 10.1038/ng.2426. Epub 2012 Sep 30.


A 3D image filter for parameter-free segmentation of macromolecular structures from electron tomograms.

Ali RA, Landsberg MJ, Knauth E, Morgan GP, Marsh BJ, Hankamer B.

PLoS One. 2012;7(3):e33697. doi: 10.1371/journal.pone.0033697. Epub 2012 Mar 29.


Direct fed microbial supplementation repartitions host energy to the immune system.

Qiu R, Croom J, Ali RA, Ballou AL, Smith CD, Ashwell CM, Hassan HM, Chiang CC, Koci MD.

J Anim Sci. 2012 Aug;90(8):2639-51. doi: 10.2527/jas.2011-4611. Epub 2012 Feb 24.


Comprehensive analysis of commercially available mouse antichicken monoclonal antibodies for cross-reactivity with peripheral blood leukocytes from commercial turkeys.

Meyerhoff RR, Ali RA, Liu K, Huang GQ, Koci MD.

Poult Sci. 2012 Feb;91(2):383-92. doi: 10.3382/ps.2011-01846. Erratum in: Poult Sci. 2012 Apr;91(4):1043.


DFNB86, a novel autosomal recessive non-syndromic deafness locus on chromosome 16p13.3.

Ali RA, Rehman AU, Khan SN, Husnain T, Riazuddin S, Friedman TB, Ahmed ZM, Riazuddin S.

Clin Genet. 2012 May;81(5):498-500. doi: 10.1111/j.1399-0004.2011.01729.x. Epub 2011 Dec 28. No abstract available.


Characterization of turkey inducible nitric oxide synthase and identification of its expression in the intestinal epithelium following astrovirus infection.

Meyerhoff RR, Nighot PK, Ali RA, Blikslager AT, Koci MD.

Comp Immunol Microbiol Infect Dis. 2012 Jan;35(1):63-9. doi: 10.1016/j.cimid.2011.10.001. Epub 2011 Nov 25.


Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing.

Winter M, Wait E, Roysam B, Goderie SK, Ali RA, Kokovay E, Temple S, Cohen AR.

Nat Protoc. 2011 Nov 17;6(12):1942-52. doi: 10.1038/nprot.2011.422.


Mutations of GIPC3 cause nonsyndromic hearing loss DFNB72 but not DFNB81 that also maps to chromosome 19p.

Rehman AU, Gul K, Morell RJ, Lee K, Ahmed ZM, Riazuddin S, Ali RA, Shahzad M, Jaleel AU, Andrade PB, Khan SN, Khan S, Brewer CC, Ahmad W, Leal SM, Riazuddin S, Friedman TB.

Hum Genet. 2011 Dec;130(6):759-65. doi: 10.1007/s00439-011-1018-5. Epub 2011 Jun 10.


Clinical features, treatment, and survival of patients with colorectal cancer with or without inflammatory bowel disease.

Ali RA, Dooley C, Comber H, Newell J, Egan LJ.

Clin Gastroenterol Hepatol. 2011 Jul;9(7):584-9.e1-2. doi: 10.1016/j.cgh.2011.04.016. Epub 2011 Apr 22.


How to manage the risk of colorectal cancer in ulcerative colitis.

Ali RA, Egan LJ.

Curr Drug Targets. 2011 Sep;12(10):1424-32. Review.


Metabolites of the fungistatic agent 2β-methoxyclovan-9α-ol by Macrophomina phaseolina.

Musharraf SG, Najeeb A, Ali RA, Ali AA, Choudhary MI.

J Agric Food Chem. 2011 Apr 13;59(7):3234-8. doi: 10.1021/jf104314f. Epub 2011 Mar 10.


Loss-of-function mutations of ILDR1 cause autosomal-recessive hearing impairment DFNB42.

Borck G, Ur Rehman A, Lee K, Pogoda HM, Kakar N, von Ameln S, Grillet N, Hildebrand MS, Ahmed ZM, Nürnberg G, Ansar M, Basit S, Javed Q, Morell RJ, Nasreen N, Shearer AE, Ahmad A, Kahrizi K, Shaikh RS, Ali RA, Khan SN, Goebel I, Meyer NC, Kimberling WJ, Webster JA, Stephan DA, Schiller MR, Bahlo M, Najmabadi H, Gillespie PG, Nürnberg P, Wollnik B, Riazuddin S, Smith RJ, Ahmad W, Müller U, Hammerschmidt M, Friedman TB, Riazuddin S, Leal SM, Ahmad J, Kubisch C.

Am J Hum Genet. 2011 Feb 11;88(2):127-37. doi: 10.1016/j.ajhg.2010.12.011. Epub 2011 Jan 20.


Analysis and development of structure-fragmentation relationships in withanolides using an electrospray ionization quadropole time-of-flight tandem mass spectrometry hybrid instrument.

Musharraf SG, Ali A, Ali RA, Yousuf S, Rahman AU, Choudhary MI.

Rapid Commun Mass Spectrom. 2011 Jan 15;25(1):104-14. doi: 10.1002/rcm.4835.


The Role of Unknown Risk Factors in Myocardial Infarction.

Ali RA, Asadollah M, Hossien RA.

Cardiol Res. 2010 Dec;1(1):15-19. doi: 10.4021/cr103e. Epub 2010 Nov 20.


Astrovirus infection induces sodium malabsorption and redistributes sodium hydrogen exchanger expression.

Nighot PK, Moeser A, Ali RA, Blikslager AT, Koci MD.

Virology. 2010 Jun 5;401(2):146-54. doi: 10.1016/j.virol.2010.02.004. Epub 2010 Mar 12.


A case of Hashimoto encephalopathy in a Malay woman with Graves disease.

Ngiu CS, Ibrahim NM, Yahya WN, Tan HJ, Mustafa N, Basri H, Ali RA.

BMJ Case Rep. 2009;2009. pii: bcr01.2009.1501. doi: 10.1136/bcr.01.2009.1501. Epub 2009 Jun 26.

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