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Items: 14


SplinectomeR Enables Group Comparisons in Longitudinal Microbiome Studies.

Shields-Cutler RR, Al-Ghalith GA, Yassour M, Knights D.

Front Microbiol. 2018 Apr 23;9:785. doi: 10.3389/fmicb.2018.00785. eCollection 2018.


SHI7 Is a Self-Learning Pipeline for Multipurpose Short-Read DNA Quality Control.

Al-Ghalith GA, Hillmann B, Ang K, Shields-Cutler R, Knights D.

mSystems. 2018 Apr 24;3(3). pii: e00202-17. doi: 10.1128/mSystems.00202-17. eCollection 2018 May-Jun.


Pretransplant Gut Colonization with Intrinsically Vancomycin-Resistant Enterococci (E. gallinarum and E. casseliflavus) and Outcomes of Allogeneic Hematopoietic Cell Transplantation.

Rashidi A, Ebadi M, Shields-Cutler RR, DeFor TE, Al-Ghalith GA, Ferrieri P, Young JH, Dunny GM, Knights D, Weisdorf DJ.

Biol Blood Marrow Transplant. 2018 Jan 31. pii: S1083-8791(18)30041-7. doi: 10.1016/j.bbmt.2018.01.025. [Epub ahead of print]


Systematic review: human gut dysbiosis induced by non-antibiotic prescription medications.

Le Bastard Q, Al-Ghalith GA, Grégoire M, Chapelet G, Javaudin F, Dailly E, Batard E, Knights D, Montassier E.

Aliment Pharmacol Ther. 2018 Feb;47(3):332-345. doi: 10.1111/apt.14451. Epub 2017 Dec 5. Review.


Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi).

Springer A, Fichtel C, Al-Ghalith GA, Koch F, Amato KR, Clayton JB, Knights D, Kappeler PM.

Ecol Evol. 2017 Jun 15;7(15):5732-5745. doi: 10.1002/ece3.3148. eCollection 2017 Aug.


Moving beyond de novo clustering in fungal community ecology.

Cline LC, Song Z, Al-Ghalith GA, Knights D, Kennedy PG.

New Phytol. 2017 Nov;216(3):629-634. doi: 10.1111/nph.14752. Epub 2017 Aug 7. No abstract available.


Captivity humanizes the primate microbiome.

Clayton JB, Vangay P, Huang H, Ward T, Hillmann BM, Al-Ghalith GA, Travis DA, Long HT, Tuan BV, Minh VV, Cabana F, Nadler T, Toddes B, Murphy T, Glander KE, Johnson TJ, Knights D.

Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10376-81. doi: 10.1073/pnas.1521835113. Epub 2016 Aug 29.


Erratum to: Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection.

Montassier E, Al-Ghalith GA, Ward T, Corvec S, Gastinne T, Potel G, Moreau P, De La Cochetiere MF, Batard E, Knights D.

Genome Med. 2016 May 26;8(1):61. No abstract available.


Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection.

Montassier E, Al-Ghalith GA, Ward T, Corvec S, Gastinne T, Potel G, Moreau P, de la Cochetiere MF, Batard E, Knights D.

Genome Med. 2016 Apr 28;8(1):49. doi: 10.1186/s13073-016-0301-4. Erratum in: Genome Med. 2016;8(1):61.


NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes.

Al-Ghalith GA, Montassier E, Ward HN, Knights D.

PLoS Comput Biol. 2016 Jan 28;12(1):e1004658. doi: 10.1371/journal.pcbi.1004658. eCollection 2016 Jan.


Bygiene: The New Paradigm of Bidirectional Hygiene.

Al-Ghalith GA, Knights D.

Yale J Biol Med. 2015 Nov 24;88(4):359-65. eCollection 2015 Dec. Review.


Chemotherapy-driven dysbiosis in the intestinal microbiome.

Montassier E, Gastinne T, Vangay P, Al-Ghalith GA, Bruley des Varannes S, Massart S, Moreau P, Potel G, de La Cochetière MF, Batard E, Knights D.

Aliment Pharmacol Ther. 2015 Sep;42(5):515-28. doi: 10.1111/apt.13302. Epub 2015 Jul 6.


The guts of obesity: progress and challenges in linking gut microbes to obesity.

Al-Ghalith GA, Vangay P, Knights D.

Discov Med. 2015 Feb;19(103):81-8. Review.


Complex host genetics influence the microbiome in inflammatory bowel disease.

Knights D, Silverberg MS, Weersma RK, Gevers D, Dijkstra G, Huang H, Tyler AD, van Sommeren S, Imhann F, Stempak JM, Huang H, Vangay P, Al-Ghalith GA, Russell C, Sauk J, Knight J, Daly MJ, Huttenhower C, Xavier RJ.

Genome Med. 2014 Dec 2;6(12):107. doi: 10.1186/s13073-014-0107-1. eCollection 2014.

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