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Protein binders and their applications in developmental biology.

Harmansa S, Affolter M.

Development. 2018 Jan 26;145(2). pii: dev148874. doi: 10.1242/dev.148874. Review.


Spatio-temporally separated cortical flows and spindle geometry establish physical asymmetry in fly neural stem cells.

Roubinet C, Tsankova A, Pham TT, Monnard A, Caussinus E, Affolter M, Cabernard C.

Nat Commun. 2017 Nov 9;8(1):1383. doi: 10.1038/s41467-017-01391-w.


Live imaging molecular changes in junctional tension upon VE-cadherin in zebrafish.

Lagendijk AK, Gomez GA, Baek S, Hesselson D, Hughes WE, Paterson S, Conway DE, Belting HG, Affolter M, Smith KA, Schwartz MA, Yap AS, Hogan BM.

Nat Commun. 2017 Nov 10;8(1):1402. doi: 10.1038/s41467-017-01325-6.


Myosin II is not required for Drosophila tracheal branch elongation and cell intercalation.

Ochoa-Espinosa A, Harmansa S, Caussinus E, Affolter M.

Development. 2017 Aug 15;144(16):2961-2968. doi: 10.1242/dev.148940.


Dpp from the anterior stripe of cells is crucial for the growth of the Drosophila wing disc.

Matsuda S, Affolter M.

Elife. 2017 Jul 4;6. pii: e22319. doi: 10.7554/eLife.22319.


A nanobody-based toolset to investigate the role of protein localization and dispersal in Drosophila.

Harmansa S, Alborelli I, Bieli D, Caussinus E, Affolter M.

Elife. 2017 Apr 11;6. pii: e22549. doi: 10.7554/eLife.22549.


Flow-Dependent Endothelial YAP Regulation Contributes to Vessel Maintenance.

Nakajima H, Yamamoto K, Agarwala S, Terai K, Fukui H, Fukuhara S, Ando K, Miyazaki T, Yokota Y, Schmelzer E, Belting HG, Affolter M, Lecaudey V, Mochizuki N.

Dev Cell. 2017 Mar 27;40(6):523-536.e6. doi: 10.1016/j.devcel.2017.02.019.


Distinct and redundant functions of Esama and VE-cadherin during vascular morphogenesis.

Sauteur L, Affolter M, Belting HG.

Development. 2017 Apr 15;144(8):1554-1565. doi: 10.1242/dev.140038. Epub 2017 Mar 6.


Absence of 11-keto reduction of cortisone and 11-ketotestosterone in the model organism zebrafish.

Tsachaki M, Meyer A, Weger B, Kratschmar DV, Tokarz J, Adamski J, Belting HG, Affolter M, Dickmeis T, Odermatt A.

J Endocrinol. 2017 Feb;232(2):323-335. doi: 10.1530/JOE-16-0495. Epub 2016 Dec 7.


Amnioserosa cell constriction but not epidermal actin cable tension autonomously drives dorsal closure.

Pasakarnis L, Frei E, Caussinus E, Affolter M, Brunner D.

Nat Cell Biol. 2016 Nov;18(11):1161-1172. doi: 10.1038/ncb3420. Epub 2016 Oct 17.


First Test of Long-Range Collisional Drag via Plasma Wave Damping.

Affolter M, Anderegg F, Dubin DH, Driscoll CF.

Phys Rev Lett. 2016 Oct 7;117(15):155001. Epub 2016 Oct 4.


deGradFP: A System to Knockdown GFP-Tagged Proteins.

Caussinus E, Affolter M.

Methods Mol Biol. 2016;1478:177-187. Review.


Amino Acid Composition of Breast Milk from Urban Chinese Mothers.

Garcia-Rodenas CL, Affolter M, Vinyes-Pares G, De Castro CA, Karagounis LG, Zhang Y, Wang P, Thakkar SK.

Nutrients. 2016 Sep 28;8(10). pii: E606.


Temporal Changes of Protein Composition in Breast Milk of Chinese Urban Mothers and Impact of Caesarean Section Delivery.

Affolter M, Garcia-Rodenas CL, Vinyes-Pares G, Jenni R, Roggero I, Avanti-Nigro O, de Castro CA, Zhao A, Zhang Y, Wang P, Thakkar SK, Favre L.

Nutrients. 2016 Aug 17;8(8). pii: E504. doi: 10.3390/nu8080504.


Cell behaviors and dynamics during angiogenesis.

Betz C, Lenard A, Belting HG, Affolter M.

Development. 2016 Jul 1;143(13):2249-60. doi: 10.1242/dev.135616. Review.


Mapping the molecular steps of secretory-lysosome-driven tracheal tube fusion.

Aydogan V, Belting HG, Affolter M.

Nat Cell Biol. 2016 Jun 28;18(7):720-2. doi: 10.1038/ncb3383.


Development and Application of Functionalized Protein Binders in Multicellular Organisms.

Bieli D, Alborelli I, Harmansa S, Matsuda S, Caussinus E, Affolter M.

Int Rev Cell Mol Biol. 2016;325:181-213. doi: 10.1016/bs.ircmb.2016.02.006. Epub 2016 Mar 19. Review.


Seeing is Believing, or How GFP Changed My Approach to Science.

Affolter M.

Curr Top Dev Biol. 2016;116:1-16. doi: 10.1016/bs.ctdb.2015.12.001. Epub 2016 Jan 21.


BMP morphogen gradients in flies.

Matsuda S, Harmansa S, Affolter M.

Cytokine Growth Factor Rev. 2016 Feb;27:119-27. doi: 10.1016/j.cytogfr.2015.11.003. Epub 2015 Nov 24.


A bacterial type III secretion-based protein delivery tool for broad applications in cell biology.

Ittig SJ, Schmutz C, Kasper CA, Amstutz M, Schmidt A, Sauteur L, Vigano MA, Low SH, Affolter M, Cornelis GR, Nigg EA, Arrieumerlou C.

J Cell Biol. 2015 Nov 23;211(4):913-31. doi: 10.1083/jcb.201502074.


Dpp spreading is required for medial but not for lateral wing disc growth.

Harmansa S, Hamaratoglu F, Affolter M, Caussinus E.

Nature. 2015 Nov 19;527(7578):317-22. doi: 10.1038/nature15712. Epub 2015 Nov 9.


Establishment of a Developmental Compartment Requires Interactions between Three Synergistic Cis-regulatory Modules.

Bieli D, Kanca O, Requena D, Hamaratoglu F, Gohl D, Schedl P, Affolter M, Slattery M, Müller M, Estella C.

PLoS Genet. 2015 Oct 15;11(10):e1005376. doi: 10.1371/journal.pgen.1005376. eCollection 2015 Oct.


Homeodomain proteins: an update.

Bürglin TR, Affolter M.

Chromosoma. 2016 Jun;125(3):497-521. doi: 10.1007/s00412-015-0543-8. Epub 2015 Oct 13. Review.


Endothelial cell division in angiogenic sprouts of differing cellular architecture.

Aydogan V, Lenard A, Denes AS, Sauteur L, Belting HG, Affolter M.

Biol Open. 2015 Sep 14;4(10):1259-69. doi: 10.1242/bio.012740.


In vitro activity of commercial probiotic Lactobacillus strains against uropathogenic Escherichia coli.

Delley M, Bruttin A, Richard M, Affolter M, Rezzonico E, Brück WM.

FEMS Microbiol Lett. 2015 Jul;362(13):fnv096. doi: 10.1093/femsle/fnv096. Epub 2015 Jun 14.


In memoriam--Walter J. Gehring.

Affolter M, Nigg EA.

Chromosoma. 2015 Sep;124(3):291. doi: 10.1007/s00412-015-0523-z. Epub 2015 May 30. No abstract available.


A cellular process that includes asymmetric cytokinesis remodels the dorsal tracheal branches in Drosophila larvae.

Denes AS, Kanca O, Affolter M.

Development. 2015 May 15;142(10):1794-805. doi: 10.1242/dev.118372.


Endothelial cell self-fusion during vascular pruning.

Lenard A, Daetwyler S, Betz C, Ellertsdottir E, Belting HG, Huisken J, Affolter M.

PLoS Biol. 2015 Apr 17;13(4):e1002126. doi: 10.1371/journal.pbio.1002126. eCollection 2015 Apr.


The Drosophila melanogaster Mutants apblot and apXasta Affect an Essential apterous Wing Enhancer.

Bieli D, Kanca O, Gohl D, Denes A, Schedl P, Affolter M, Müller M.

G3 (Bethesda). 2015 Apr 2;5(6):1129-43. doi: 10.1534/g3.115.017707.


Formin-mediated actin polymerization at endothelial junctions is required for vessel lumen formation and stabilization.

Phng LK, Gebala V, Bentley K, Philippides A, Wacker A, Mathivet T, Sauteur L, Stanchi F, Belting HG, Affolter M, Gerhardt H.

Dev Cell. 2015 Jan 12;32(1):123-32. doi: 10.1016/j.devcel.2014.11.017.


Space charge frequency shifts of the cyclotron modes in multi-species ion plasmas.

Affolter M, Anderegg F, Driscoll CF.

J Am Soc Mass Spectrom. 2015 Feb;26(2):330-6. doi: 10.1007/s13361-014-1030-9. Epub 2014 Dec 2.


Protein interference applications in cellular and developmental biology using DARPins that recognize GFP and mCherry.

Brauchle M, Hansen S, Caussinus E, Lenard A, Ochoa-Espinosa A, Scholz O, Sprecher SG, Plückthun A, Affolter M.

Biol Open. 2014 Nov 21;3(12):1252-61. doi: 10.1242/bio.201410041.


Cdh5/VE-cadherin promotes endothelial cell interface elongation via cortical actin polymerization during angiogenic sprouting.

Sauteur L, Krudewig A, Herwig L, Ehrenfeuchter N, Lenard A, Affolter M, Belting HG.

Cell Rep. 2014 Oct 23;9(2):504-13. doi: 10.1016/j.celrep.2014.09.024. Epub 2014 Oct 16.


The evolution of cichlid fish egg-spots is linked with a cis-regulatory change.

Santos ME, Braasch I, Boileau N, Meyer BS, Sauteur L, Böhne A, Belting HG, Affolter M, Salzburger W.

Nat Commun. 2014 Oct 9;5:5149. doi: 10.1038/ncomms6149.


Fibroblast growth factor signaling affects vascular outgrowth and is required for the maintenance of blood vessel integrity.

De Smet F, Tembuyser B, Lenard A, Claes F, Zhang J, Michielsen C, Van Schepdael A, Herbert JM, Bono F, Affolter M, Dewerchin M, Carmeliet P.

Chem Biol. 2014 Oct 23;21(10):1310-1317. doi: 10.1016/j.chembiol.2014.07.018. Epub 2014 Sep 4.


Walter Jakob Gehring: A master of developmental biology.

Affolter M, Wüthrich K.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12574-5. doi: 10.1073/pnas.1413434111. Epub 2014 Aug 5. No abstract available.


Dpp/BMP signaling in flies: from molecules to biology.

Hamaratoglu F, Affolter M, Pyrowolakis G.

Semin Cell Dev Biol. 2014 Aug;32:128-36. doi: 10.1016/j.semcdb.2014.04.036. Epub 2014 May 9. Review.


AmotL2 links VE-cadherin to contractile actin fibres necessary for aortic lumen expansion.

Hultin S, Zheng Y, Mojallal M, Vertuani S, Gentili C, Balland M, Milloud R, Belting HG, Affolter M, Helker CS, Adams RH, Herzog W, Uhlen P, Majumdar A, Holmgren L.

Nat Commun. 2014 May 7;5:3743. doi: 10.1038/ncomms4743.


IV. Tools and methods for studying cell migration and cell rearrangement in tissue and organ development.

Kanca O, Ochoa-Espinosa A, Affolter M.

Methods. 2014 Jun 15;68(1):228-32. doi: 10.1016/j.ymeth.2014.03.004. Epub 2014 Mar 12. Review.


Protein knockouts in living eukaryotes using deGradFP and green fluorescent protein fusion targets.

Caussinus E, Kanca O, Affolter M.

Curr Protoc Protein Sci. 2013 Sep 24;73:Unit 30.2. doi: 10.1002/0471140864.ps3002s73.


Raeppli: a whole-tissue labeling tool for live imaging of Drosophila development.

Kanca O, Caussinus E, Denes AS, Percival-Smith A, Affolter M.

Development. 2014 Jan;141(2):472-80. doi: 10.1242/dev.102913. Epub 2013 Dec 11. Erratum in: Development. 2014 Feb 1;141(3):725.


Tugging organs into place.

Lenard A, Affolter M.

Dev Cell. 2013 Nov 11;27(3):243-4. doi: 10.1016/j.devcel.2013.10.021.


Blood flow changes coincide with cellular rearrangements during blood vessel pruning in zebrafish embryos.

Kochhan E, Lenard A, Ellertsdottir E, Herwig L, Affolter M, Belting HG, Siekmann AF.

PLoS One. 2013 Oct 11;8(10):e75060. doi: 10.1371/journal.pone.0075060. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/9e16dd10-9d37-4d4f-85b2-0811852b15f0.


In vivo analysis reveals a highly stereotypic morphogenetic pathway of vascular anastomosis.

Lenard A, Ellertsdottir E, Herwig L, Krudewig A, Sauteur L, Belting HG, Affolter M.

Dev Cell. 2013 Jun 10;25(5):492-506. doi: 10.1016/j.devcel.2013.05.010.


The zebrafish common cardinal veins develop by a novel mechanism: lumen ensheathment.

Helker CS, Schuermann A, Karpanen T, Zeuschner D, Belting HG, Affolter M, Schulte-Merker S, Herzog W.

Development. 2013 Jul;140(13):2776-86. doi: 10.1242/dev.091876. Epub 2013 May 22.


VE-PTP regulates VEGFR2 activity in stalk cells to establish endothelial cell polarity and lumen formation.

Hayashi M, Majumdar A, Li X, Adler J, Sun Z, Vertuani S, Hellberg C, Mellberg S, Koch S, Dimberg A, Koh GY, Dejana E, Belting HG, Affolter M, Thurston G, Holmgren L, Vestweber D, Claesson-Welsh L.

Nat Commun. 2013;4:1672. doi: 10.1038/ncomms2683.


Food peptidomics: large scale analysis of small bioactive peptides--a pilot study.

Lahrichi SL, Affolter M, Zolezzi IS, Panchaud A.

J Proteomics. 2013 Aug 2;88:83-91. doi: 10.1016/j.jprot.2013.02.018. Epub 2013 Mar 8.


The tip cell concept 10 years after: new players tune in for a common theme.

Siekmann AF, Affolter M, Belting HG.

Exp Cell Res. 2013 May 15;319(9):1255-63. doi: 10.1016/j.yexcr.2013.01.019. Epub 2013 Feb 16. Review. No abstract available.


Microsomal triacylglycerol transfer protein (MTP) is required to expand tracheal lumen in Drosophila in a cell-autonomous manner.

Baer MM, Palm W, Eaton S, Leptin M, Affolter M.

J Cell Sci. 2012 Dec 15;125(Pt 24):6038-48. doi: 10.1242/jcs.110452. Epub 2012 Nov 6.


Developmental role of zebrafish protease-activated receptor 1 (PAR1) in the cardio-vascular system.

Ellertsdottir E, Berthold PR, Bouzaffour M, Dufourcq P, Trayer V, Gauron C, Vriz S, Affolter M, Rampon C.

PLoS One. 2012;7(7):e42131. doi: 10.1371/journal.pone.0042131. Epub 2012 Jul 30.

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