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Items: 21

1.

Association of breast cancer risk with genetic variants showing differential allelic expression: Identification of a novel breast cancer susceptibility locus at 4q21.

Hamdi Y, Soucy P, Adoue V, Michailidou K, Canisius S, Lemaçon A, Droit A, Andrulis IL, Anton-Culver H, Arndt V, Baynes C, Blomqvist C, Bogdanova NV, Bojesen SE, Bolla MK, Bonanni B, Borresen-Dale AL, Brand JS, Brauch H, Brenner H, Broeks A, Burwinkel B, Chang-Claude J; NBCS Collaborators, Couch FJ, Cox A, Cross SS, Czene K, Darabi H, Dennis J, Devilee P, Dörk T, Dos-Santos-Silva I, Eriksson M, Fasching PA, Figueroa J, Flyger H, García-Closas M, Giles GG, Goldberg MS, González-Neira A, Grenaker-Alnæs G, Guénel P, Haeberle L, Haiman CA, Hamann U, Hallberg E, Hooning MJ, Hopper JL, Jakubowska A, Jones M, Kabisch M, Kataja V, Lambrechts D, Le Marchand L, Lindblom A, Lubinski J, Mannermaa A, Maranian M, Margolin S, Marme F, Milne RL, Neuhausen SL, Nevanlinna H, Neven P, Olswold C, Peto J, Plaseska-Karanfilska D, Pylkäs K, Radice P, Rudolph A, Sawyer EJ, Schmidt MK, Shu XO, Southey MC, Swerdlow A, Tollenaar RA, Tomlinson I, Torres D, Truong T, Vachon C, Van Den Ouweland AM, Wang Q, Winqvist R; kConFab/AOCS Investigators, Zheng W, Benitez J, Chenevix-Trench G, Dunning AM, Pharoah PD, Kristensen V, Hall P, Easton DF, Pastinen T, Nord S, Simard J.

Oncotarget. 2016 Dec 6;7(49):80140-80163. doi: 10.18632/oncotarget.12818.

2.

Peripheral regulatory T lymphocytes recirculating to the thymus suppress the development of their precursors.

Thiault N, Darrigues J, Adoue V, Gros M, Binet B, Perals C, Leobon B, Fazilleau N, Joffre OP, Robey EA, van Meerwijk JP, Romagnoli P.

Nat Immunol. 2015 Jun;16(6):628-34. doi: 10.1038/ni.3150. Epub 2015 May 4.

PMID:
25939024
3.

Allelic expression mapping across cellular lineages to establish impact of non-coding SNPs.

Adoue V, Schiavi A, Light N, Almlöf JC, Lundmark P, Ge B, Kwan T, Caron M, Rönnblom L, Wang C, Chen SH, Goodall AH, Cambien F, Deloukas P, Ouwehand WH, Syvänen AC, Pastinen T.

Mol Syst Biol. 2014 Oct 16;10:754. doi: 10.15252/msb.20145114.

4.

Interrogation of allelic chromatin states in human cells by high-density ChIP-genotyping.

Light N, Adoue V, Ge B, Chen SH, Kwan T, Pastinen T.

Epigenetics. 2014 Sep;9(9):1238-51. doi: 10.4161/epi.29920. Epub 2014 Jul 23.

5.

Fusion of TTYH1 with the C19MC microRNA cluster drives expression of a brain-specific DNMT3B isoform in the embryonal brain tumor ETMR.

Kleinman CL, Gerges N, Papillon-Cavanagh S, Sin-Chan P, Pramatarova A, Quang DA, Adoue V, Busche S, Caron M, Djambazian H, Bemmo A, Fontebasso AM, Spence T, Schwartzentruber J, Albrecht S, Hauser P, Garami M, Klekner A, Bognar L, Montes JL, Staffa A, Montpetit A, Berube P, Zakrzewska M, Zakrzewski K, Liberski PP, Dong Z, Siegel PM, Duchaine T, Perotti C, Fleming A, Faury D, Remke M, Gallo M, Dirks P, Taylor MD, Sladek R, Pastinen T, Chan JA, Huang A, Majewski J, Jabado N.

Nat Genet. 2014 Jan;46(1):39-44. doi: 10.1038/ng.2849. Epub 2013 Dec 8.

PMID:
24316981
6.

Analysis of expressed SNPs identifies variable extents of expression from the human inactive X chromosome.

Cotton AM, Ge B, Light N, Adoue V, Pastinen T, Brown CJ.

Genome Biol. 2013 Nov 1;14(11):R122. doi: 10.1186/gb-2013-14-11-r122.

7.

Global identification of conserved post-transcriptional regulatory programs in trypanosomatids.

Najafabadi HS, Lu Z, MacPherson C, Mehta V, Adoue V, Pastinen T, Salavati R.

Nucleic Acids Res. 2013 Oct;41(18):8591-600. doi: 10.1093/nar/gkt647. Epub 2013 Jul 22.

8.

RNA editing of protein sequences: a rare event in human transcriptomes.

Kleinman CL, Adoue V, Majewski J.

RNA. 2012 Sep;18(9):1586-96. doi: 10.1261/rna.033233.112. Epub 2012 Jul 25.

9.

Promoter polymorphisms in CHI3L1 are associated with asthma.

Verlaan DJ, Ouimet M, Adoue V, Sirois-Gagnon D, Larivière M, Ge B, Beaulieu P, Dias J, Lam KC, Koka V, Laprise C, Pastinen T, Sinnett D.

J Allergy Clin Immunol. 2012 Aug;130(2):533-5. doi: 10.1016/j.jaci.2012.03.015. Epub 2012 Apr 24. No abstract available.

PMID:
22534532
10.

Human genetics in full resolution.

Schiavi A, Light N, Adoue V, Busche S, Pastinen T.

Genome Biol. 2011 Nov 24;12(11):309. doi: 10.1186/gb-2011-12-11-309.

11.

Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.

N'Diaye A, Chen GK, Palmer CD, Ge B, Tayo B, Mathias RA, Ding J, Nalls MA, Adeyemo A, Adoue V, Ambrosone CB, Atwood L, Bandera EV, Becker LC, Berndt SI, Bernstein L, Blot WJ, Boerwinkle E, Britton A, Casey G, Chanock SJ, Demerath E, Deming SL, Diver WR, Fox C, Harris TB, Hernandez DG, Hu JJ, Ingles SA, John EM, Johnson C, Keating B, Kittles RA, Kolonel LN, Kritchevsky SB, Le Marchand L, Lohman K, Liu J, Millikan RC, Murphy A, Musani S, Neslund-Dudas C, North KE, Nyante S, Ogunniyi A, Ostrander EA, Papanicolaou G, Patel S, Pettaway CA, Press MF, Redline S, Rodriguez-Gil JL, Rotimi C, Rybicki BA, Salako B, Schreiner PJ, Signorello LB, Singleton AB, Stanford JL, Stram AH, Stram DO, Strom SS, Suktitipat B, Thun MJ, Witte JS, Yanek LR, Ziegler RG, Zheng W, Zhu X, Zmuda JM, Zonderman AB, Evans MK, Liu Y, Becker DM, Cooper RS, Pastinen T, Henderson BE, Hirschhorn JN, Lettre G, Haiman CA.

PLoS Genet. 2011 Oct;7(10):e1002298. doi: 10.1371/journal.pgen.1002298. Epub 2011 Oct 6. Erratum in: PLoS Genet. 2011 Nov;7(11). doi:10.1371/annotation/58c67154-3f10-4155-9085-dcd6e3689008.

12.

Deimination and expression of peptidylarginine deiminases during cutaneous wound healing in mice.

Coudane F, Mechin MC, Huchenq A, Henry J, Nachat R, Ishigami A, Adoue V, Sebbag M, Serre G, Simon M.

Eur J Dermatol. 2011 May-Jun;21(3):376-84. doi: 10.1684/ejd.2011.1394.

PMID:
21697043
13.

[Deimination or citrullination, a post-translational modification with many physiological and pathophysiological facets].

Méchin MC, Nachat R, Coudane F, Adoue V, Arnaud J, Serre G, Simon M.

Med Sci (Paris). 2011 Jan;27(1):49-54. doi: 10.1051/medsci/201127149. Review. French.

14.

Global analysis of the impact of environmental perturbation on cis-regulation of gene expression.

Grundberg E, Adoue V, Kwan T, Ge B, Duan QL, Lam KC, Koka V, Kindmark A, Weiss ST, Tantisira K, Mallmin H, Raby BA, Nilsson O, Pastinen T.

PLoS Genet. 2011 Jan 20;7(1):e1001279. doi: 10.1371/journal.pgen.1001279.

15.

Deimination is regulated at multiple levels including auto-deimination of peptidylarginine deiminases.

Méchin MC, Coudane F, Adoue V, Arnaud J, Duplan H, Charveron M, Schmitt AM, Takahara H, Serre G, Simon M.

Cell Mol Life Sci. 2010 May;67(9):1491-503. doi: 10.1007/s00018-010-0262-5. Epub 2010 Jan 29.

PMID:
20111885
16.

Transcriptional regulation of peptidylarginine deiminase expression in human keratinocytes.

Ying S, Dong S, Kawada A, Kojima T, Chavanas S, Méchin MC, Adoue V, Serre G, Simon M, Takahara H.

J Dermatol Sci. 2009 Jan;53(1):2-9. doi: 10.1016/j.jdermsci.2008.09.009. Epub 2008 Nov 11. Review.

PMID:
19004619
17.

Long-range enhancer differentially regulated by c-Jun and JunD controls peptidylarginine deiminase-3 gene in keratinocytes.

Adoue V, Chavanas S, Coudane F, Méchin MC, Caubet C, Ying S, Dong S, Duplan H, Charveron M, Takahara H, Serre G, Simon M.

J Mol Biol. 2008 Dec 31;384(5):1048-57. doi: 10.1016/j.jmb.2008.10.019. Epub 2008 Oct 15.

PMID:
18952102
18.

Long-range enhancer associated with chromatin looping allows AP-1 regulation of the peptidylarginine deiminase 3 gene in differentiated keratinocyte.

Chavanas S, Adoue V, Méchin MC, Ying S, Dong S, Duplan H, Charveron M, Takahara H, Serre G, Simon M.

PLoS One. 2008;3(10):e3408. doi: 10.1371/journal.pone.0003408. Epub 2008 Oct 16.

19.

Update on peptidylarginine deiminases and deimination in skin physiology and severe human diseases.

Méchin MC, Sebbag M, Arnaud J, Nachat R, Foulquier C, Adoue V, Coudane F, Duplan H, Schmitt AM, Chavanas S, Guerrin M, Serre G, Simon M.

Int J Cosmet Sci. 2007 Jun;29(3):147-68. doi: 10.1111/j.1467-2494.2007.00377.x.

20.

Crucial roles of MZF1 and Sp1 in the transcriptional regulation of the peptidylarginine deiminase type I gene (PADI1) in human keratinocytes.

Dong S, Ying S, Kojima T, Shiraiwa M, Kawada A, Méchin MC, Adoue V, Chavanas S, Serre G, Simon M, Takahara H.

J Invest Dermatol. 2008 Mar;128(3):549-57. Epub 2007 Sep 13.

21.

Peptidylarginine deiminases and deimination in biology and pathology: relevance to skin homeostasis.

Chavanas S, Méchin MC, Nachat R, Adoue V, Coudane F, Serre G, Simon M.

J Dermatol Sci. 2006 Nov;44(2):63-72. Epub 2006 Sep 14. Review.

PMID:
16973334

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