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Items: 33

1.

Comparative Response of the Hepatic Transcriptomes of Domesticated and Wild Turkey to Aflatoxin B₁.

Reed KM, Mendoza KM, Abrahante JE, Coulombe RA.

Toxins (Basel). 2018 Jan 13;10(1). pii: E42. doi: 10.3390/toxins10010042.

2.

Transcriptomic analysis of gene signatures associated with sickle pain.

Paul JA, Aich A, Abrahante JE, Wang Y, LaRue RS, Rathe SK, Kalland K, Mittal A, Jha R, Peng F, Largaespada DA, Bagchi A, Gupta K.

Sci Data. 2017 May 16;4:170051. doi: 10.1038/sdata.2017.51.

3.

A tRNA fragment, tRF5-Glu, regulates BCAR3 expression and proliferation in ovarian cancer cells.

Zhou K, Diebel KW, Holy J, Skildum A, Odean E, Hicks DA, Schotl B, Abrahante JE, Spillman MA, Bemis LT.

Oncotarget. 2017 Sep 8;8(56):95377-95391. doi: 10.18632/oncotarget.20709. eCollection 2017 Nov 10.

4.

Single Cell Resolution of Human Hematoendothelial Cells Defines Transcriptional Signatures of Hemogenic Endothelium.

Angelos MG, Abrahante JE, Blum RH, Kaufman DS.

Stem Cells. 2018 Feb;36(2):206-217. doi: 10.1002/stem.2739. Epub 2017 Dec 13.

PMID:
29139170
5.

A method for extracting and characterizing RNA from urine: For downstream PCR and RNAseq analysis.

Zhou K, Spillman MA, Behbakht K, Komatsu JM, Abrahante JE, Hicks D, Schotl B, Odean E, Jones KL, Graner MW, Bemis LT.

Anal Biochem. 2017 Nov 1;536:8-15. doi: 10.1016/j.ab.2017.08.003. Epub 2017 Aug 10.

PMID:
28803886
6.

Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells.

Reed KM, Mendoza KM, Abrahante JE, Barnes NE, Velleman SG, Strasburg GM.

BMC Genomics. 2017 May 6;18(1):352. doi: 10.1186/s12864-017-3740-4.

7.

Establishing a Large-Animal Model for In Vivo Reprogramming of Bile Duct Cells into Insulin-Secreting Cells to Treat Diabetes.

Hill CM, Banga A, Abrahante JE, Yuan C, Mutch LA, Janecek J, O'Brien T, Graham ML, Dutton JR.

Hum Gene Ther Clin Dev. 2017 Jun;28(2):87-95. doi: 10.1089/humc.2017.011. Epub 2017 Mar 31.

PMID:
28363269
8.

CFTR is a tumor suppressor gene in murine and human intestinal cancer.

Than BLN, Linnekamp JF, Starr TK, Largaespada DA, Rod A, Zhang Y, Bruner V, Abrahante J, Schumann A, Luczak T, Walter J, Niemczyk A, O'Sullivan MG, Medema JP, Fijneman RJA, Meijer GA, Van den Broek E, Hodges CA, Scott PM, Vermeulen L, Cormier RT.

Oncogene. 2017 Jun 15;36(24):3504. doi: 10.1038/onc.2017.3. Epub 2017 Feb 13.

PMID:
28192405
9.

Single cell sequencing reveals heterogeneity within ovarian cancer epithelium and cancer associated stromal cells.

Winterhoff BJ, Maile M, Mitra AK, Sebe A, Bazzaro M, Geller MA, Abrahante JE, Klein M, Hellweg R, Mullany SA, Beckman K, Daniel J, Starr TK.

Gynecol Oncol. 2017 Mar;144(3):598-606. doi: 10.1016/j.ygyno.2017.01.015. Epub 2017 Jan 19.

10.

circTAIL-seq, a targeted method for deep analysis of RNA 3' tails, reveals transcript-specific differences by multiple metrics.

Gazestani VH, Hampton M, Abrahante JE, Salavati R, Zimmer SL.

RNA. 2016 Mar;22(3):477-86. doi: 10.1261/rna.054494.115. Epub 2016 Jan 12.

11.

CFTR is a tumor suppressor gene in murine and human intestinal cancer.

Than BL, Linnekamp JF, Starr TK, Largaespada DA, Rod A, Zhang Y, Bruner V, Abrahante J, Schumann A, Luczak T, Niemczyk A, O'Sullivan MG, Medema JP, Fijneman RJ, Meijer GA, Van den Broek E, Hodges CA, Scott PM, Vermeulen L, Cormier RT.

Oncogene. 2016 Aug 11;35(32):4179-87. doi: 10.1038/onc.2015.483. Epub 2016 Jan 11. Erratum in: Oncogene. 2017 Jun 15;36(24):3504.

12.

Draft Genome Sequence of Pasteurella multocida Isolate P1062, Isolated from Bovine Respiratory Disease.

Abrahante JE, Hunter SS, Maheswaran SK, Hauglund MJ, Tatum FM, Briggs RE.

Genome Announc. 2015 Oct 22;3(5). pii: e01254-15. doi: 10.1128/genomeA.01254-15.

13.

The Candidate Cancer Gene Database: a database of cancer driver genes from forward genetic screens in mice.

Abbott KL, Nyre ET, Abrahante J, Ho YY, Isaksson Vogel R, Starr TK.

Nucleic Acids Res. 2015 Jan;43(Database issue):D844-8. doi: 10.1093/nar/gku770. Epub 2014 Sep 4.

14.

Draft Genome Sequences of Two Pasteurella multocida Strains Isolated from Buffaloes in India with Hemorrhagic Septicemia Disease.

Abrahante JE, Veeregowda BM, Hogtapur SS, Briggs RE, Maheswaran SK, Sreevatsan S.

Genome Announc. 2014 Aug 7;2(4). pii: e00798-14. doi: 10.1128/genomeA.00798-14.

15.

Genetic signature of histiocytic sarcoma revealed by a sleeping beauty transposon genetic screen in mice.

Been RA, Linden MA, Hager CJ, DeCoursin KJ, Abrahante JE, Landman SR, Steinbach M, Sarver AL, Largaespada DA, Starr TK.

PLoS One. 2014 May 14;9(5):e97280. doi: 10.1371/journal.pone.0097280. eCollection 2014.

16.

Purifying selection in porcine reproductive and respiratory syndrome virus ORF5a protein influences variation in envelope glycoprotein 5 glycosylation.

Robinson SR, Abrahante JE, Johnson CR, Murtaugh MP.

Infect Genet Evol. 2013 Dec;20:362-8. doi: 10.1016/j.meegid.2013.09.022. Epub 2013 Sep 29.

17.

Comparative genome analysis of an avirulent and two virulent strains of avian Pasteurella multocida reveals candidate genes involved in fitness and pathogenicity.

Johnson TJ, Abrahante JE, Hunter SS, Hauglund M, Tatum FM, Maheswaran SK, Briggs RE.

BMC Microbiol. 2013 May 14;13:106. doi: 10.1186/1471-2180-13-106.

18.

Immune response to ORF5a protein immunization is not protective against porcine reproductive and respiratory syndrome virus infection.

Robinson SR, Figueiredo MC, Abrahante JE, Murtaugh MP.

Vet Microbiol. 2013 Jun 28;164(3-4):281-5. doi: 10.1016/j.vetmic.2013.03.006. Epub 2013 Mar 21.

19.

Draft Genome Sequences of Two Virulent Serotypes of Avian Pasteurella multocida.

Abrahante JE, Johnson TJ, Hunter SS, Maheswaran SK, Hauglund MJ, Bayles DO, Tatum FM, Briggs RE.

Genome Announc. 2013 Jan;1(1). pii: e00058-12. doi: 10.1128/genomeA.00058-12. Epub 2013 Jan 31.

20.

Surveillance of Bungowannah pestivirus in the upper Midwestern USA.

Abrahante JE, Zhang JW, Rossow K, Zimmerman JJ, Murtaugh MP.

Transbound Emerg Dis. 2014 Aug;61(4):375-7. doi: 10.1111/tbed.12035. Epub 2012 Nov 27.

PMID:
23343245
21.

Comparative faecal microbiota of dogs with and without calcium oxalate stones.

Gnanandarajah JS, Johnson TJ, Kim HB, Abrahante JE, Lulich JP, Murtaugh MP.

J Appl Microbiol. 2012 Oct;113(4):745-56. doi: 10.1111/j.1365-2672.2012.05390.x. Epub 2012 Aug 2.

22.

Presence of Oxalobacter formigenes in the intestinal tract is associated with the absence of calcium oxalate urolith formation in dogs.

Gnanandarajah JS, Abrahante JE, Lulich JP, Murtaugh MP.

Urol Res. 2012 Oct;40(5):467-73. doi: 10.1007/s00240-011-0451-1. Epub 2012 Jan 6.

PMID:
22223029
23.

Diagnostic performance measures of ELISA and quantitative PCR tests for porcine circovirus type 2 exposure using Bayesian latent class analysis.

Haley C, Wagner B, Puvanendiran S, Abrahante J, Murtaugh MP.

Prev Vet Med. 2011 Aug 1;101(1-2):79-88. doi: 10.1016/j.prevetmed.2011.05.001. Epub 2011 May 31.

PMID:
21632130
24.

Microbiological safety of porcine islets: comparison with source pig.

Abrahante JE, Martins K, Papas KK, Hering BJ, Schuurman HJ, Murtaugh MP.

Xenotransplantation. 2011 Mar-Apr;18(2):88-93. doi: 10.1111/j.1399-3089.2011.00632.x.

PMID:
21496116
25.

Absence of porcine circovirus type 1 (PCV1) and high prevalence of PCV 2 exposure and infection in swine finisher herds.

Puvanendiran S, Stone S, Yu W, Johnson CR, Abrahante J, Jimenez LG, Griggs T, Haley C, Wagner B, Murtaugh MP.

Virus Res. 2011 Apr;157(1):92-8. doi: 10.1016/j.virusres.2011.02.012. Epub 2011 Feb 23.

PMID:
21352865
26.

The ever-expanding diversity of porcine reproductive and respiratory syndrome virus.

Murtaugh MP, Stadejek T, Abrahante JE, Lam TT, Leung FC.

Virus Res. 2010 Dec;154(1-2):18-30. doi: 10.1016/j.virusres.2010.08.015. Epub 2010 Aug 27. Review.

PMID:
20801173
27.

Comparative infection efficiency of Porcine reproductive and respiratory syndrome virus field isolates on MA104 cells and porcine alveolar macrophages.

de Abin MF, Spronk G, Wagner M, Fitzsimmons M, Abrahante JE, Murtaugh MP.

Can J Vet Res. 2009 Jul;73(3):200-4.

28.

Reverse transcription loop-mediated isothermal amplification for the detection of Porcine reproductive and respiratory syndrome virus.

Rovira A, Abrahante J, Murtaugh M, Muñoz-Zanzi C.

J Vet Diagn Invest. 2009 May;21(3):350-4.

PMID:
19407088
29.

Fecundity of Cryptosporidium parvum is correlated with intracellular levels of the viral symbiont CPV.

Jenkins MC, Higgins J, Abrahante JE, Kniel KE, O'Brien C, Trout J, Lancto CA, Abrahamsen MS, Fayer R.

Int J Parasitol. 2008 Jul;38(8-9):1051-5. Epub 2007 Nov 22.

PMID:
18096164
30.

Comparative analysis of apicomplexa and genomic diversity in eukaryotes.

Templeton TJ, Iyer LM, Anantharaman V, Enomoto S, Abrahante JE, Subramanian GM, Hoffman SL, Abrahamsen MS, Aravind L.

Genome Res. 2004 Sep;14(9):1686-95.

31.

Complete genome sequence of the apicomplexan, Cryptosporidium parvum.

Abrahamsen MS, Templeton TJ, Enomoto S, Abrahante JE, Zhu G, Lancto CA, Deng M, Liu C, Widmer G, Tzipori S, Buck GA, Xu P, Bankier AT, Dear PH, Konfortov BA, Spriggs HF, Iyer L, Anantharaman V, Aravind L, Kapur V.

Science. 2004 Apr 16;304(5669):441-5. Epub 2004 Mar 25.

32.

The Caenorhabditis elegans hunchback-like gene lin-57/hbl-1 controls developmental time and is regulated by microRNAs.

Abrahante JE, Daul AL, Li M, Volk ML, Tennessen JM, Miller EA, Rougvie AE.

Dev Cell. 2003 May;4(5):625-37.

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