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Ancient polymorphisms and divergence hitchhiking contribute to genomic islands of divergence within a poplar species complex.

Ma T, Wang K, Hu Q, Xi Z, Wan D, Wang Q, Feng J, Jiang D, Ahani H, Abbott RJ, Lascoux M, Nevo E, Liu J.

Proc Natl Acad Sci U S A. 2018 Jan 9;115(2):E236-E243. doi: 10.1073/pnas.1713288114. Epub 2017 Dec 26.


Asymptomatic Primary Infection with Epstein-Barr Virus: Observations on Young Adult Cases.

Abbott RJ, Pachnio A, Pedroza-Pacheco I, Leese AM, Begum J, Long HM, Croom-Carter D, Stacey A, Moss PAH, Hislop AD, Borrow P, Rickinson AB, Bell AI.

J Virol. 2017 Oct 13;91(21). pii: e00382-17. doi: 10.1128/JVI.00382-17. Print 2017 Nov 1.


Chasing ghosts: allopolyploid origin of Oxyria sinensis (Polygonaceae) from its only diploid congener and an unknown ancestor.

Luo X, Hu Q, Zhou P, Zhang D, Wang Q, Abbott RJ, Liu J.

Mol Ecol. 2017 Jun;26(11):3037-3049. doi: 10.1111/mec.14097. Epub 2017 Apr 1.


Morphological Convergence Between an Allopolyploid and One of its Parental Species Correlates with Biased Gene Expression and DNA Loss.

Alexander-Webber D, Abbott RJ, Chapman MA.

J Hered. 2016 Sep;107(5):445-54. doi: 10.1093/jhered/esw035. Epub 2016 May 23.


Genomics of hybridization and its evolutionary consequences.

Abbott RJ, Barton NH, Good JM.

Mol Ecol. 2016 Jun;25(11):2325-32. doi: 10.1111/mec.13685. No abstract available.


Genomic architecture of phenotypic divergence between two hybridizing plant species along an elevational gradient.

Brennan AC, Hiscock SJ, Abbott RJ.

AoB Plants. 2016 May 31;8. pii: plw022. doi: 10.1093/aobpla/plw022. Print 2016.


Current plant speciation research: unravelling the processes and mechanisms behind the evolution of reproductive isolation barriers.

Lafon-Placette C, Vallejo-Marín M, Parisod C, Abbott RJ, Köhler C.

New Phytol. 2016 Jan;209(1):29-33. doi: 10.1111/nph.13756. No abstract available.


Arctic plant origins and early formation of circumarctic distributions: a case study of the mountain sorrel, Oxyria digyna.

Wang Q, Liu J, Allen GA, Ma Y, Yue W, Marr KL, Abbott RJ.

New Phytol. 2016 Jan;209(1):343-53. doi: 10.1111/nph.13568. Epub 2015 Jul 20.


Cooperation between Epstein-Barr virus immune evasion proteins spreads protection from CD8+ T cell recognition across all three phases of the lytic cycle.

Quinn LL, Zuo J, Abbott RJ, Shannon-Lowe C, Tierney RJ, Hislop AD, Rowe M.

PLoS Pathog. 2014 Aug 21;10(8):e1004322. doi: 10.1371/journal.ppat.1004322. eCollection 2014 Aug.


Altitudinal gradients, plant hybrid zones and evolutionary novelty.

Abbott RJ, Brennan AC.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 5;369(1648). pii: 20130346. doi: 10.1098/rstb.2013.0346. Review.


Investigating the structure of the factor B vWF-A domain/CD55 protein-protein complex using DEER spectroscopy: successes and pitfalls.

Lovett JE, Abbott RJ, Roversi P, Johnson S, Caesar JJ, Doria M, Jeschke G, Timmel CR, Lea SM.

Mol Phys. 2013 Oct;111(18-19):2865-2872. Epub 2013 Oct 9.


Diploid hybrid origin of Ostryopsis intermedia (Betulaceae) in the Qinghai-Tibet Plateau triggered by Quaternary climate change.

Liu B, Abbott RJ, Lu Z, Tian B, Liu J.

Mol Ecol. 2014 Jun;23(12):3013-27. doi: 10.1111/mec.12783. Epub 2014 Jun 9.


Increased genetic divergence between two closely related fir species in areas of range overlap.

Wang J, Abbott RJ, Ingvarsson PK, Liu J.

Ecol Evol. 2014 Apr;4(7):1019-29. doi: 10.1002/ece3.1007. Epub 2014 Mar 3.


Interspecific crossing and genetic mapping reveal intrinsic genomic incompatibility between two Senecio species that form a hybrid zone on Mount Etna, Sicily.

Brennan AC, Hiscock SJ, Abbott RJ.

Heredity (Edinb). 2014 Sep;113(3):195-204. doi: 10.1038/hdy.2014.14. Epub 2014 Mar 5.


Evolutionary history of Purple cone spruce (Picea purpurea) in the Qinghai-Tibet Plateau: homoploid hybrid origin and Pleistocene expansion.

Sun Y, Abbott RJ, Li L, Li L, Zou J, Liu J.

Mol Ecol. 2014 Feb;23(2):343-59. doi: 10.1111/mec.12599. Epub 2013 Dec 20.


Genomic insights into salt adaptation in a desert poplar.

Ma T, Wang J, Zhou G, Yue Z, Hu Q, Chen Y, Liu B, Qiu Q, Wang Z, Zhang J, Wang K, Jiang D, Gou C, Yu L, Zhan D, Zhou R, Luo W, Ma H, Yang Y, Pan S, Fang D, Luo Y, Wang X, Wang G, Wang J, Wang Q, Lu X, Chen Z, Liu J, Lu Y, Yin Y, Yang H, Abbott RJ, Wu Y, Wan D, Li J, Yin T, Lascoux M, Difazio SP, Tuskan GA, Wang J, Liu J.

Nat Commun. 2013;4:2797. doi: 10.1038/ncomms3797. Erratum in: Nat Commun. 2014;5:3454. Jianquan, Liu [corrected to Liu, Jianquan].


CD8+ T cell responses to lytic EBV infection: late antigen specificities as subdominant components of the total response.

Abbott RJ, Quinn LL, Leese AM, Scholes HM, Pachnio A, Rickinson AB.

J Immunol. 2013 Dec 1;191(11):5398-409. doi: 10.4049/jimmunol.1301629. Epub 2013 Oct 21.


Pliocene intraspecific divergence and Plio-Pleistocene range expansions within Picea likiangensis (Lijiang spruce), a dominant forest tree of the Qinghai-Tibet Plateau.

Li L, Abbott RJ, Liu B, Sun Y, Li L, Zou J, Wang X, Miehe G, Liu J.

Mol Ecol. 2013 Oct;22(20):5237-55. doi: 10.1111/mec.12466.


MHC II tetramers visualize human CD4+ T cell responses to Epstein-Barr virus infection and demonstrate atypical kinetics of the nuclear antigen EBNA1 response.

Long HM, Chagoury OL, Leese AM, Ryan GB, James E, Morton LT, Abbott RJ, Sabbah S, Kwok W, Rickinson AB.

J Exp Med. 2013 May 6;210(5):933-49. doi: 10.1084/jem.20121437. Epub 2013 Apr 8.


Pleistocene climate change and the origin of two desert plant species, Pugionium cornutum and Pugionium dolabratum (Brassicaceae), in northwest China.

Wang Q, Abbott RJ, Yu QS, Lin K, Liu JQ.

New Phytol. 2013 Jul;199(1):277-87. doi: 10.1111/nph.12241. Epub 2013 Apr 4.


In and out of Madagascar: dispersal to peripheral islands, insular speciation and diversification of Indian Ocean daisy trees (Psiadia, Asteraceae).

Strijk JS, Noyes RD, Strasberg D, Cruaud C, Gavory F, Chase MW, Abbott RJ, Thébaud C.

PLoS One. 2012;7(8):e42932. doi: 10.1371/journal.pone.0042932. Epub 2012 Aug 10. Erratum in: PLoS One. 2013;8(8). doi:10.1371/annotation/fa4d2334-e48c-4e29-b8e1-07d755d317fa.


Tales of the unexpected: phylogeography of the arctic-alpine model plant Saxifraga oppositifolia (Saxifragaceae) revisited.

Winkler M, Tribsch A, Schneeweiss GM, Brodbeck S, Gugerli F, Holderegger R, Abbott RJ, Schönswetter P.

Mol Ecol. 2012 Sep;21(18):4618-30. doi: 10.1111/j.1365-294X.2012.05705.x. Epub 2012 Jul 19.


Expansion of somatically reverted memory CD8+ T cells in patients with X-linked lymphoproliferative disease caused by selective pressure from Epstein-Barr virus.

Palendira U, Low C, Bell AI, Ma CS, Abbott RJ, Phan TG, Riminton DS, Choo S, Smart JM, Lougaris V, Giliani S, Buckley RH, Grimbacher B, Alvaro F, Klion AD, Nichols KE, Adelstein S, Rickinson AB, Tangye SG.

J Exp Med. 2012 May 7;209(5):913-24. doi: 10.1084/jem.20112391. Epub 2012 Apr 9.


Out of the Qinghai-Tibet Plateau: evidence for the origin and dispersal of Eurasian temperate plants from a phylogeographic study of Hippophaë rhamnoides (Elaeagnaceae).

Jia DR, Abbott RJ, Liu TL, Mao KS, Bartish IV, Liu JQ.

New Phytol. 2012 Jun;194(4):1123-33. doi: 10.1111/j.1469-8137.2012.04115.x. Epub 2012 Mar 20.


Genetic divergence, range expansion and possible homoploid hybrid speciation among pine species in Northeast China.

Ren GP, Abbott RJ, Zhou YF, Zhang LR, Peng YL, Liu JQ.

Heredity (Edinb). 2012 May;108(5):552-62. doi: 10.1038/hdy.2011.123. Epub 2011 Dec 21.


The genetic ghost of an invasion past: colonization and extinction revealed by historical hybridization in Senecio.

Pelser PB, Abbott RJ, Comes HP, Milton JJ, Möller M, Looseley ME, Cron GV, Barcelona JF, Kennedy AH, Watson LE, Barone R, Hernández F, Kadereit JW.

Mol Ecol. 2012 Jan;21(2):369-87. doi: 10.1111/j.1365-294X.2011.05399.x. Epub 2011 Dec 15.


Molecular genetic and quantitative trait divergence associated with recent homoploid hybrid speciation: a study of Senecio squalidus (Asteraceae).

Brennan AC, Barker D, Hiscock SJ, Abbott RJ.

Heredity (Edinb). 2012 Feb;108(2):87-95. doi: 10.1038/hdy.2011.46. Epub 2011 Aug 10.


Species delimitation and biogeography of two fir species (Abies) in central China: cytoplasmic DNA variation.

Wang J, Abbott RJ, Peng YL, Du FK, Liu JQ.

Heredity (Edinb). 2011 Oct;107(4):362-70. doi: 10.1038/hdy.2011.22. Epub 2011 Mar 30.


Nonadditive changes to cytosine methylation as a consequence of hybridization and genome duplication in Senecio (Asteraceae).

Hegarty MJ, Batstone T, Barker GL, Edwards KJ, Abbott RJ, Hiscock SJ.

Mol Ecol. 2011 Jan;20(1):105-13. doi: 10.1111/j.1365-294X.2010.04926.x. Epub 2010 Nov 12.


Phylogeography and allopatric divergence of cypress species (Cupressus L.) in the Qinghai-Tibetan Plateau and adjacent regions.

Xu T, Abbott RJ, Milne RI, Mao K, Du FK, Wu G, Ciren Z, Miehe G, Liu J.

BMC Evol Biol. 2010 Jun 22;10:194. doi: 10.1186/1471-2148-10-194.


Gene flow and species delimitation: a case study of two pine species with overlapping distributions in southeast China.

Zhou YF, Abbott RJ, Jiang ZY, Du FK, Milne RI, Liu JQ.

Evolution. 2010 Aug;64(8):2342-52. doi: 10.1111/j.1558-5646.2010.00988.x. Epub 2010 Mar 8.


Introgression of fitness genes across a ploidy barrier.

Chapman MA, Abbott RJ.

New Phytol. 2010 Apr;186(1):63-71. doi: 10.1111/j.1469-8137.2009.03091.x. Epub 2009 Nov 13.


Neuroleptic malignant syndrome and acute motor axonal neuropathy after Campylobacter jejuni infection.

Rajabally YA, Ramlackhansingh A, Fraser M, Abbott RJ.

Neurophysiol Clin. 2009 Aug;39(3):135-8. doi: 10.1016/j.neucli.2009.02.001. Epub 2009 Mar 17.


Upregulation of interleukin 7 receptor alpha and programmed death 1 marks an epitope-specific CD8+ T-cell response that disappears following primary Epstein-Barr virus infection.

Sauce D, Larsen M, Abbott RJ, Hislop AD, Leese AM, Khan N, Papagno L, Freeman GJ, Rickinson AB.

J Virol. 2009 Sep;83(18):9068-78. doi: 10.1128/JVI.00141-09. Epub 2009 Jul 15.


Adaptation and selection in the Senecio (Asteraceae) hybrid zone on Mount Etna, Sicily.

Brennan AC, Bridle JR, Wang AL, Hiscock SJ, Abbott RJ.

New Phytol. 2009 Aug;183(3):702-17. doi: 10.1111/j.1469-8137.2009.02944.x. Epub 2009 Jul 8.


Vertical optokinetic nystagmus in Parkinson's disease.

Knapp CM, Gottlob I, McLean RJ, Rajabally YA, Abbott RJ, Rafelt S, Proudlock FA.

Mov Disord. 2009 Jul 30;24(10):1533-8. doi: 10.1002/mds.22634.


Phylogeography of Pinus tabulaeformis Carr. (Pinaceae), a dominant species of coniferous forest in northern China.

Chen K, Abbott RJ, Milne RI, Tian XM, Liu J.

Mol Ecol. 2008 Oct;17(19):4276-88.


Extreme changes to gene expression associated with homoploid hybrid speciation.

Hegarty MJ, Barker GL, Brennan AC, Edwards KJ, Abbott RJ, Hiscock SJ.

Mol Ecol. 2009 Mar;18(5):877-89. doi: 10.1111/j.1365-294X.2008.04054.x. Epub 2009 Jan 16.


History and evolution of alpine plants endemic to the Qinghai-Tibetan Plateau: Aconitum gymnandrum (Ranunculaceae).

Wang L, Abbott RJ, Zheng W, Chen P, Wang Y, Liu J.

Mol Ecol. 2009 Feb;18(4):709-21. doi: 10.1111/j.1365-294X.2008.04055.x. Epub 2009 Jan 16.


Steroid-responsive paraneoplastic demyelinating neuropathy and myelopathy associated with breast carcinoma.

Rajabally YA, Qaddoura B, Abbott RJ.

J Clin Neuromuscul Dis. 2008 Dec;10(2):65-9. doi: 10.1097/CND.0b013e31818e952b.


An HLA-A2-restricted T-cell epitope mapped to the BNLF2a immune evasion protein of Epstein-Barr virus that inhibits TAP.

Bell MJ, Abbott RJ, Croft NP, Hislop AD, Burrows SR.

J Virol. 2009 Mar;83(6):2783-8. doi: 10.1128/JVI.01724-08. Epub 2009 Jan 7.


Regulatory genes control a key morphological and ecological trait transferred between species.

Kim M, Cui ML, Cubas P, Gillies A, Lee K, Chapman MA, Abbott RJ, Coen E.

Science. 2008 Nov 14;322(5904):1116-9. doi: 10.1126/science.1164371.


Introduction. Speciation in plants and animals: pattern and process.

Abbott RJ, Ritchie MG, Hollingsworth PM.

Philos Trans R Soc Lond B Biol Sci. 2008 Sep 27;363(1506):2965-9. doi: 10.1098/rstb.2008.0096.


Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio.

Hegarty MJ, Barker GL, Brennan AC, Edwards KJ, Abbott RJ, Hiscock SJ.

Philos Trans R Soc Lond B Biol Sci. 2008 Sep 27;363(1506):3055-69. doi: 10.1098/rstb.2008.0080.


Phylogeny of Hopea (Dipterocarpaceae) inferred from chloroplast DNA and nuclear PgiC sequences.

Choong CY, Wickneswari R, Norwati M, Abbott RJ.

Mol Phylogenet Evol. 2008 Sep;48(3):1238-43. doi: 10.1016/j.ympev.2008.01.004. Epub 2008 Jan 16. No abstract available.


Reproductive isolation among two interfertile Rhododendron species: low frequency of post-F1 hybrid genotypes in alpine hybrid zones.

Milne RI, Abbott RJ.

Mol Ecol. 2008 Feb;17(4):1108-21. doi: 10.1111/j.1365-294X.2007.03643.x.


Blowin' in the wind - the transition from ecotype to species.

Abbott RJ, Comes HP.

New Phytol. 2007;175(2):197-200. No abstract available.


Structural and functional characterization of a novel T cell receptor co-regulatory protein complex, CD97-CD55.

Abbott RJ, Spendlove I, Roversi P, Fitzgibbon H, Knott V, Teriete P, McDonnell JM, Handford PA, Lea SM.

J Biol Chem. 2007 Jul 27;282(30):22023-32. Epub 2007 Apr 20.

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