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Items: 1 to 20 of 41

1.

Identification of early zygotic genes in the yellow fever mosquito Aedes aegypti and discovery of a motif involved in early zygotic genome activation.

Biedler JK, Hu W, Tae H, Tu Z.

PLoS One. 2012;7(3):e33933. doi: 10.1371/journal.pone.0033933. Epub 2012 Mar 23.

2.

The Drosophila melanogaster Genetic Reference Panel.

Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, Carbone MA, Castellano D, Chaboub L, Duncan L, Harris Z, Javaid M, Jayaseelan JC, Jhangiani SN, Jordan KW, Lara F, Lawrence F, Lee SL, Librado P, Linheiro RS, Lyman RF, Mackey AJ, Munidasa M, Muzny DM, Nazareth L, Newsham I, Perales L, Pu LL, Qu C, Ràmia M, Reid JG, Rollmann SM, Rozas J, Saada N, Turlapati L, Worley KC, Wu YQ, Yamamoto A, Zhu Y, Bergman CM, Thornton KR, Mittelman D, Gibbs RA.

Nature. 2012 Feb 8;482(7384):173-8. doi: 10.1038/nature10811.

3.

Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq.

Lott SE, Villalta JE, Schroth GP, Luo S, Tonkin LA, Eisen MB.

PLoS Biol. 2011 Feb 8;9(2):e1000590. doi: 10.1371/journal.pbio.1000590.

4.

Grainyhead and Zelda compete for binding to the promoters of the earliest-expressed Drosophila genes.

Harrison MM, Botchan MR, Cline TW.

Dev Biol. 2010 Sep 15;345(2):248-55. doi: 10.1016/j.ydbio.2010.06.026. Epub 2010 Jul 1.

5.

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.

Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L.

Nat Biotechnol. 2010 May;28(5):511-5. doi: 10.1038/nbt.1621. Epub 2010 May 2.

6.

Tracking rates of transcription and splicing in vivo.

Ardehali MB, Lis JT.

Nat Struct Mol Biol. 2009 Nov;16(11):1123-4. doi: 10.1038/nsmb1109-1123. No abstract available.

PMID:
19888309
7.

The Sequence Alignment/Map format and SAMtools.

Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup.

Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8.

8.

Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster.

Venken KJ, Carlson JW, Schulze KL, Pan H, He Y, Spokony R, Wan KH, Koriabine M, de Jong PJ, White KP, Bellen HJ, Hoskins RA.

Nat Methods. 2009 Jun;6(6):431-4. doi: 10.1038/nmeth.1331.

9.

TopHat: discovering splice junctions with RNA-Seq.

Trapnell C, Pachter L, Salzberg SL.

Bioinformatics. 2009 May 1;25(9):1105-11. doi: 10.1093/bioinformatics/btp120. Epub 2009 Mar 16.

10.

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Langmead B, Trapnell C, Pop M, Salzberg SL.

Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.

11.

FlyBase: enhancing Drosophila Gene Ontology annotations.

Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, Zhang H; FlyBase Consortium.

Nucleic Acids Res. 2009 Jan;37(Database issue):D555-9. doi: 10.1093/nar/gkn788. Epub 2008 Oct 23.

12.

Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo.

De Renzis S, Elemento O, Tavazoie S, Wieschaus EF.

PLoS Biol. 2007 May;5(5):e117. Erratum in: PLoS Biol. 2007 Aug;5(8):e213. PLoS Biol. 2007 Jul;5(7):e195.

13.

The TAGteam DNA motif controls the timing of Drosophila pre-blastoderm transcription.

ten Bosch JR, Benavides JA, Cline TW.

Development. 2006 May;133(10):1967-77. Epub 2006 Apr 19.

14.

Asymmetric Rab 11 endosomes regulate delta recycling and specify cell fate in the Drosophila nervous system.

Emery G, Hutterer A, Berdnik D, Mayer B, Wirtz-Peitz F, Gaitan MG, Knoblich JA.

Cell. 2005 Sep 9;122(5):763-73.

15.

Transcriptome analysis of zebrafish embryogenesis using microarrays.

Mathavan S, Lee SG, Mak A, Miller LD, Murthy KR, Govindarajan KR, Tong Y, Wu YL, Lam SH, Yang H, Ruan Y, Korzh V, Gong Z, Liu ET, Lufkin T.

PLoS Genet. 2005 Aug;1(2):260-76. Epub 2005 Aug 26.

16.

Dynamics of global gene expression changes during mouse preimplantation development.

Hamatani T, Carter MG, Sharov AA, Ko MS.

Dev Cell. 2004 Jan;6(1):117-31.

17.

Both cyclin B levels and DNA-replication checkpoint control the early embryonic mitoses in Drosophila.

Ji JY, Squirrell JM, Schubiger G.

Development. 2004 Jan;131(2):401-11. Epub 2003 Dec 17.

18.

Reassessing the role and dynamics of nonmuscle myosin II during furrow formation in early Drosophila embryos.

Royou A, Field C, Sisson JC, Sullivan W, Karess R.

Mol Biol Cell. 2004 Feb;15(2):838-50. Epub 2003 Dec 2.

19.

RNA SYNTHESIS DURING AMPHIBIAN DEVELOPMENT.

BROWN DD.

J Exp Zool. 1964 Oct;157:101-17. No abstract available.

PMID:
14220207
20.

Beta-catenin/Tcf-regulated transcription prior to the midblastula transition.

Yang J, Tan C, Darken RS, Wilson PA, Klein PS.

Development. 2002 Dec;129(24):5743-52.

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