Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 33

1.

Use of allele-specific FAIRE to determine functional regulatory polymorphism using large-scale genotyping arrays.

Smith AJ, Howard P, Shah S, Eriksson P, Stender S, Giambartolomei C, Folkersen L, Tybjærg-Hansen A, Kumari M, Palmen J, Hingorani AD, Talmud PJ, Humphries SE.

PLoS Genet. 2012;8(8):e1002908. doi: 10.1371/journal.pgen.1002908.

2.

DNase I sensitivity QTLs are a major determinant of human expression variation.

Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, De Leon S, Michelini K, Lewellen N, Crawford GE, Stephens M, Gilad Y, Pritchard JK.

Nature. 2012 Feb 5;482(7385):390-4. doi: 10.1038/nature10808.

3.

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.

Song L, Zhang Z, Grasfeder LL, Boyle AP, Giresi PG, Lee BK, Sheffield NC, Gräf S, Huss M, Keefe D, Liu Z, London D, McDaniell RM, Shibata Y, Showers KA, Simon JM, Vales T, Wang T, Winter D, Zhang Z, Clarke ND, Birney E, Iyer VR, Crawford GE, Lieb JD, Furey TS.

Genome Res. 2011 Oct;21(10):1757-67. doi: 10.1101/gr.121541.111.

4.

Swi2/Snf2-related translocases prevent accumulation of toxic Rad51 complexes during mitotic growth.

Shah PP, Zheng X, Epshtein A, Carey JN, Bishop DK, Klein HL.

Mol Cell. 2010 Sep 24;39(6):862-72. doi: 10.1016/j.molcel.2010.08.028.

5.

Contrasting chromatin organization of CpG islands and exons in the human genome.

Choi JK.

Genome Biol. 2010;11(7):R70. doi: 10.1186/gb-2010-11-7-r70.

6.

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.

Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK.

Mol Cell. 2010 May 28;38(4):576-89. doi: 10.1016/j.molcel.2010.05.004.

7.

Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences.

Tirosh I, Sigal N, Barkai N.

Mol Syst Biol. 2010 May 11;6:365. doi: 10.1038/msb.2010.20.

8.

Heritable individual-specific and allele-specific chromatin signatures in humans.

McDaniell R, Lee BK, Song L, Liu Z, Boyle AP, Erdos MR, Scott LJ, Morken MA, Kucera KS, Battenhouse A, Keefe D, Collins FS, Willard HF, Lieb JD, Furey TS, Crawford GE, Iyer VR, Birney E.

Science. 2010 Apr 9;328(5975):235-9. doi: 10.1126/science.1184655.

9.

Variation in transcription factor binding among humans.

Kasowski M, Grubert F, Heffelfinger C, Hariharan M, Asabere A, Waszak SM, Habegger L, Rozowsky J, Shi M, Urban AE, Hong MY, Karczewski KJ, Huber W, Weissman SM, Gerstein MB, Korbel JO, Snyder M.

Science. 2010 Apr 9;328(5975):232-5. doi: 10.1126/science.1183621.

10.

Genetic analysis of variation in transcription factor binding in yeast.

Zheng W, Zhao H, Mancera E, Steinmetz LM, Snyder M.

Nature. 2010 Apr 22;464(7292):1187-91. doi: 10.1038/nature08934.

11.

A map of open chromatin in human pancreatic islets.

Gaulton KJ, Nammo T, Pasquali L, Simon JM, Giresi PG, Fogarty MP, Panhuis TM, Mieczkowski P, Secchi A, Bosco D, Berney T, Montanya E, Mohlke KL, Lieb JD, Ferrer J.

Nat Genet. 2010 Mar;42(3):255-9. doi: 10.1038/ng.530.

12.

BEDTools: a flexible suite of utilities for comparing genomic features.

Quinlan AR, Hall IM.

Bioinformatics. 2010 Mar 15;26(6):841-2. doi: 10.1093/bioinformatics/btq033.

13.

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.

Badis G, Chan ET, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson CD, Gossett AJ, Hasinoff MJ, Warren CL, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo ZX, Clarke ND, Lieb JD, Ansari AZ, Nislow C, Hughes TR.

Mol Cell. 2008 Dec 26;32(6):878-87. doi: 10.1016/j.molcel.2008.11.020.

14.

F-Seq: a feature density estimator for high-throughput sequence tags.

Boyle AP, Guinney J, Crawford GE, Furey TS.

Bioinformatics. 2008 Nov 1;24(21):2537-8. doi: 10.1093/bioinformatics/btn480.

15.

Epigenetic regulation and the variability of gene expression.

Choi JK, Kim YJ.

Nat Genet. 2008 Feb;40(2):141-7. doi: 10.1038/ng.2007.58.

PMID:
18227874
16.
17.

Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification.

Lee SI, Pe'er D, Dudley AM, Church GM, Koller D.

Proc Natl Acad Sci U S A. 2006 Sep 19;103(38):14062-7.

18.

An improved map of conserved regulatory sites for Saccharomyces cerevisiae.

MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E.

BMC Bioinformatics. 2006 Mar 7;7:113.

19.

Mapping determinants of human gene expression by regional and genome-wide association.

Cheung VG, Spielman RS, Ewens KG, Weber TM, Morley M, Burdick JT.

Nature. 2005 Oct 27;437(7063):1365-9.

20.

Genetic interactions between polymorphisms that affect gene expression in yeast.

Brem RB, Storey JD, Whittle J, Kruglyak L.

Nature. 2005 Aug 4;436(7051):701-3.

Supplemental Content

Support Center