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A simple strain typing assay for Trypanosoma cruzi: discrimination of major evolutionary lineages from a single amplification product.

Cosentino RO, Agüero F.

PLoS Negl Trop Dis. 2012;6(7):e1777. doi: 10.1371/journal.pntd.0001777. Epub 2012 Jul 31.


The revised Trypanosoma cruzi subspecific nomenclature: rationale, epidemiological relevance and research applications.

Zingales B, Miles MA, Campbell DA, Tibayrenc M, Macedo AM, Teixeira MM, Schijman AG, Llewellyn MS, Lages-Silva E, Machado CR, Andrade SG, Sturm NR.

Infect Genet Evol. 2012 Mar;12(2):240-53. doi: 10.1016/j.meegid.2011.12.009. Epub 2011 Dec 27. Review.


Candidate targets for Multilocus Sequence Typing of Trypanosoma cruzi: validation using parasite stocks from the Chaco Region and a set of reference strains.

Lauthier JJ, Tomasini N, Barnabé C, Rumi MM, D'Amato AM, Ragone PG, Yeo M, Lewis MD, Llewellyn MS, Basombrío MA, Miles MA, Tibayrenc M, Diosque P.

Infect Genet Evol. 2012 Mar;12(2):350-8. doi: 10.1016/j.meegid.2011.12.008. Epub 2011 Dec 22.


TDR Targets: a chemogenomics resource for neglected diseases.

Magariños MP, Carmona SJ, Crowther GJ, Ralph SA, Roos DS, Shanmugam D, Van Voorhis WC, Agüero F.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1118-27. doi: 10.1093/nar/gkr1053. Epub 2011 Nov 23.


Analyses of 32 loci clarify phylogenetic relationships among Trypanosoma cruzi lineages and support a single hybridization prior to human contact.

Flores-López CA, Machado CA.

PLoS Negl Trop Dis. 2011 Aug;5(8):e1272. doi: 10.1371/journal.pntd.0001272. Epub 2011 Aug 2.


Proteome-wide evidence for enhanced positive Darwinian selection within intrinsically disordered regions in proteins.

Nilsson J, Grahn M, Wright AP.

Genome Biol. 2011 Jul 19;12(7):R65. doi: 10.1186/gb-2011-12-7-r65.


Multilocus sequence typing (MLST) for lineage assignment and high resolution diversity studies in Trypanosoma cruzi.

Yeo M, Mauricio IL, Messenger LA, Lewis MD, Llewellyn MS, Acosta N, Bhattacharyya T, Diosque P, Carrasco HJ, Miles MA.

PLoS Negl Trop Dis. 2011 Jun;5(6):e1049. doi: 10.1371/journal.pntd.0001049. Epub 2011 Jun 21.


Shotgun sequencing analysis of Trypanosoma cruzi I Sylvio X10/1 and comparison with T. cruzi VI CL Brener.

Franzén O, Ochaya S, Sherwood E, Lewis MD, Llewellyn MS, Miles MA, Andersson B.

PLoS Negl Trop Dis. 2011 Mar 8;5(3):e984. doi: 10.1371/journal.pntd.0000984.


Identification of attractive drug targets in neglected-disease pathogens using an in silico approach.

Crowther GJ, Shanmugam D, Carmona SJ, Doyle MA, Hertz-Fowler C, Berriman M, Nwaka S, Ralph SA, Roos DS, Van Voorhis WC, Agüero F.

PLoS Negl Trop Dis. 2010 Aug 24;4(8):e804. doi: 10.1371/journal.pntd.0000804.


TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.

Abascal F, Zardoya R, Telford MJ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W7-13. doi: 10.1093/nar/gkq291. Epub 2010 Apr 30.


The genome sequence of Trypanosoma brucei gambiense, causative agent of chronic human african trypanosomiasis.

Jackson AP, Sanders M, Berry A, McQuillan J, Aslett MA, Quail MA, Chukualim B, Capewell P, MacLeod A, Melville SE, Gibson W, Barry JD, Berriman M, Hertz-Fowler C.

PLoS Negl Trop Dis. 2010 Apr 13;4(4):e658. doi: 10.1371/journal.pntd.0000658.


Chagas disease.

Rassi A Jr, Rassi A, Marin-Neto JA.

Lancet. 2010 Apr 17;375(9723):1388-402. doi: 10.1016/S0140-6736(10)60061-X. Review.


Evaluation of NAD(H) analogues as selective inhibitors for Trypanosoma cruzi S-adenosylhomocysteine hydrolase.

Li QS, Cai S, Fang J, Borchardt RT, Kuczera K, Middaugh CR, Schowen RL.

Nucleosides Nucleotides Nucleic Acids. 2009 May;28(5):473-84. doi: 10.1080/15257770903044572.


Triazaspirodimethoxybenzoyls as selective inhibitors of mycobacterial lipoamide dehydrogenase .

Bryk R, Arango N, Venugopal A, Warren JD, Park YH, Patel MS, Lima CD, Nathan C.

Biochemistry. 2010 Mar 2;49(8):1616-27. doi: 10.1021/bi9016186.


Temperature increase prevails over acidification in gene expression modulation of amastigote differentiation in Leishmania infantum.

Alcolea PJ, Alonso A, Gómez MJ, Sánchez-Gorostiaga A, Moreno-Paz M, González-Pastor E, Toraño A, Parro V, Larraga V.

BMC Genomics. 2010 Jan 14;11:31. doi: 10.1186/1471-2164-11-31.


A new consensus for Trypanosoma cruzi intraspecific nomenclature: second revision meeting recommends TcI to TcVI.

Zingales B, Andrade SG, Briones MR, Campbell DA, Chiari E, Fernandes O, Guhl F, Lages-Silva E, Macedo AM, Machado CR, Miles MA, Romanha AJ, Sturm NR, Tibayrenc M, Schijman AG; Second Satellite Meeting.

Mem Inst Oswaldo Cruz. 2009 Nov;104(7):1051-4.


TriTrypDB: a functional genomic resource for the Trypanosomatidae.

Aslett M, Aurrecoechea C, Berriman M, Brestelli J, Brunk BP, Carrington M, Depledge DP, Fischer S, Gajria B, Gao X, Gardner MJ, Gingle A, Grant G, Harb OS, Heiges M, Hertz-Fowler C, Houston R, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Logan FJ, Miller JA, Mitra S, Myler PJ, Nayak V, Pennington C, Phan I, Pinney DF, Ramasamy G, Rogers MB, Roos DS, Ross C, Sivam D, Smith DF, Srinivasamoorthy G, Stoeckert CJ Jr, Subramanian S, Thibodeau R, Tivey A, Treatman C, Velarde G, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D457-62. doi: 10.1093/nar/gkp851. Epub 2009 Oct 20.


Unfoldomics of human diseases: linking protein intrinsic disorder with diseases.

Uversky VN, Oldfield CJ, Midic U, Xie H, Xue B, Vucetic S, Iakoucheva LM, Obradovic Z, Dunker AK.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S7. doi: 10.1186/1471-2164-10-S1-S7.


Chromosome level assembly of the hybrid Trypanosoma cruzi genome.

Weatherly DB, Boehlke C, Tarleton RL.

BMC Genomics. 2009 Jun 1;10:255. doi: 10.1186/1471-2164-10-255.


The population genetics of dN/dS.

Kryazhimskiy S, Plotkin JB.

PLoS Genet. 2008 Dec;4(12):e1000304. doi: 10.1371/journal.pgen.1000304. Epub 2008 Dec 12.

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