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Items: 1 to 20 of 54

1.

Do miRNAs have a deep evolutionary history?

Tarver JE, Donoghue PC, Peterson KJ.

Bioessays. 2012 Oct;34(10):857-66. doi: 10.1002/bies.201200055. Epub 2012 Jul 30.

PMID:
22847169
2.

Identification of putative miRNAs from the deep-branching unicellular flagellates.

Huang PJ, Lin WC, Chen SC, Lin YH, Sun CH, Lyu PC, Tang P.

Genomics. 2012 Feb;99(2):101-7. doi: 10.1016/j.ygeno.2011.11.002. Epub 2011 Nov 18.

3.

Evolution of microRNA diversity and regulation in animals.

Berezikov E.

Nat Rev Genet. 2011 Nov 18;12(12):846-60. doi: 10.1038/nrg3079. Review.

PMID:
22094948
4.

A microRNA derived from an apparent canonical biogenesis pathway regulates variant surface protein gene expression in Giardia lamblia.

Saraiya AA, Li W, Wang CC.

RNA. 2011 Dec;17(12):2152-64. doi: 10.1261/rna.028118.111. Epub 2011 Oct 27.

5.

Gene regulation in Giardia lambia involves a putative microRNA derived from a small nucleolar RNA.

Li W, Saraiya AA, Wang CC.

PLoS Negl Trop Dis. 2011 Oct;5(10):e1338. doi: 10.1371/journal.pntd.0001338. Epub 2011 Oct 18.

6.

Evolution of the TGF-β signaling pathway and its potential role in the ctenophore, Mnemiopsis leidyi.

Pang K, Ryan JF, Baxevanis AD, Martindale MQ.

PLoS One. 2011;6(9):e24152. doi: 10.1371/journal.pone.0024152. Epub 2011 Sep 8.

7.

Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA.

Zhang L, Hou D, Chen X, Li D, Zhu L, Zhang Y, Li J, Bian Z, Liang X, Cai X, Yin Y, Wang C, Zhang T, Zhu D, Zhang D, Xu J, Chen Q, Ba Y, Liu J, Wang Q, Chen J, Wang J, Wang M, Zhang Q, Zhang J, Zen K, Zhang CY.

Cell Res. 2012 Jan;22(1):107-26. doi: 10.1038/cr.2011.158. Epub 2011 Sep 20. Erratum in: Cell Res. 2012 Jan;22(1):273-4.

8.

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.

Friedländer MR, Mackowiak SD, Li N, Chen W, Rajewsky N.

Nucleic Acids Res. 2012 Jan;40(1):37-52. doi: 10.1093/nar/gkr688. Epub 2011 Sep 12.

9.
10.

HMMER web server: interactive sequence similarity searching.

Finn RD, Clements J, Eddy SR.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W29-37. doi: 10.1093/nar/gkr367. Epub 2011 May 18.

11.

Vive la différence: biogenesis and evolution of microRNAs in plants and animals.

Axtell MJ, Westholm JO, Lai EC.

Genome Biol. 2011;12(4):221. doi: 10.1186/gb-2011-12-4-221. Epub 2011 Apr 28. Review.

12.

Acoelomorph flatworms are deuterostomes related to Xenoturbella.

Philippe H, Brinkmann H, Copley RR, Moroz LL, Nakano H, Poustka AJ, Wallberg A, Peterson KJ, Telford MJ.

Nature. 2011 Feb 10;470(7333):255-8. doi: 10.1038/nature09676.

13.

Nuclear receptors from the ctenophore Mnemiopsis leidyi lack a zinc-finger DNA-binding domain: lineage-specific loss or ancestral condition in the emergence of the nuclear receptor superfamily?

Reitzel AM, Pang K, Ryan JF, Mullikin JC, Martindale MQ, Baxevanis AD, Tarrant AM.

Evodevo. 2011 Feb 3;2(1):3. doi: 10.1186/2041-9139-2-3.

14.

Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans.

Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC.

Genome Res. 2011 Feb;21(2):286-300. doi: 10.1101/gr.113050.110. Epub 2010 Dec 22.

15.

The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa.

Ryan JF, Pang K; NISC Comparative Sequencing Program, Mullikin JC, Martindale MQ, Baxevanis AD.

Evodevo. 2010 Oct 4;1(1):9. doi: 10.1186/2041-9139-1-9.

16.

MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila.

Flynt AS, Greimann JC, Chung WJ, Lima CD, Lai EC.

Mol Cell. 2010 Jun 25;38(6):900-7. doi: 10.1016/j.molcel.2010.06.014.

17.

A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii.

Braun L, Cannella D, Ortet P, Barakat M, Sautel CF, Kieffer S, Garin J, Bastien O, Voinnet O, Hakimi MA.

PLoS Pathog. 2010 May 27;6(5):e1000920. doi: 10.1371/journal.ppat.1000920.

18.

The Ectocarpus genome and the independent evolution of multicellularity in brown algae.

Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P.

Nature. 2010 Jun 3;465(7298):617-21. doi: 10.1038/nature09016.

PMID:
20520714
19.

Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships.

Pick KS, Philippe H, Schreiber F, Erpenbeck D, Jackson DJ, Wrede P, Wiens M, Alié A, Morgenstern B, Manuel M, Wörheide G.

Mol Biol Evol. 2010 Sep;27(9):1983-7. doi: 10.1093/molbev/msq089. Epub 2010 Apr 8.

20.

High throughput genome-wide survey of small RNAs from the parasitic protists Giardia intestinalis and Trichomonas vaginalis.

Chen XS, Collins LJ, Biggs PJ, Penny D.

Genome Biol Evol. 2009 Jul 6;1:165-75. doi: 10.1093/gbe/evp017.

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