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Items: 1 to 20 of 27

1.

Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity.

Gillece JD, Schupp JM, Balajee SA, Harris J, Pearson T, Yan Y, Keim P, DeBess E, Marsden-Haug N, Wohrle R, Engelthaler DM, Lockhart SR.

PLoS One. 2011;6(12):e28550. doi: 10.1371/journal.pone.0028550. Epub 2011 Dec 7.

2.

Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA.

Engelthaler DM, Bowers J, Schupp JA, Pearson T, Ginther J, Hornstra HM, Dale J, Stewart T, Sunenshine R, Waddell V, Levy C, Gillece J, Price LB, Contente T, Beckstrom-Sternberg SM, Blaney DD, Wagner DM, Mayo M, Currie BJ, Keim P, Tuanyok A.

PLoS Negl Trop Dis. 2011 Oct;5(10):e1347. doi: 10.1371/journal.pntd.0001347. Epub 2011 Oct 18.

3.

Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak.

Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM.

MBio. 2011 Sep 1;2(4):e00157-11. doi: 10.1128/mBio.00157-11. Print 2011.

4.

Mucormycosis caused by unusual mucormycetes, non-Rhizopus, -Mucor, and -Lichtheimia species.

Gomes MZ, Lewis RE, Kontoyiannis DP.

Clin Microbiol Rev. 2011 Apr;24(2):411-45. doi: 10.1128/CMR.00056-10. Review.

5.

Next-generation sequencing of Coccidioides immitis isolated during cluster investigation.

Engelthaler DM, Chiller T, Schupp JA, Colvin J, Beckstrom-Sternberg SM, Driebe EM, Moses T, Tembe W, Sinari S, Beckstrom-Sternberg JS, Christoforides A, Pearson JV, Carpten J, Keim P, Peterson A, Terashita D, Balajee SA.

Emerg Infect Dis. 2011 Feb;17(2):227-32. doi: 10.3201/eid1702.100620.

6.

Fatal Apophysomyces elegans infection transmitted by deceased donor renal allografts.

Alexander BD, Schell WA, Siston AM, Rao CY, Bower WA, Balajee SA, Howell DN, Moore ZS, Noble-Wang J, Rhyne JA, Fleischauer AT, Maillard JM, Kuehnert M, Vikraman D, Collins BH, Marroquin CE, Park BJ.

Am J Transplant. 2010 Sep;10(9):2161-7. doi: 10.1111/j.1600-6143.2010.03216.x. Epub 2010 Aug 25.

7.

Apophysomyces elegans: epidemiology, amplified fragment length polymorphism typing, and in vitro antifungal susceptibility pattern.

Chakrabarti A, Shivaprakash MR, Curfs-Breuker I, Baghela A, Klaassen CH, Meis JF.

J Clin Microbiol. 2010 Dec;48(12):4580-5. doi: 10.1128/JCM.01420-10. Epub 2010 Sep 29.

8.

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA.

Genome Res. 2010 Sep;20(9):1297-303. doi: 10.1101/gr.107524.110. Epub 2010 Jul 19.

9.

Molecular phylogenetic diversity of the emerging mucoralean fungus Apophysomyces: proposal of three new species.

Alvarez E, Stchigel AM, Cano J, Sutton DA, Fothergill AW, Chander J, Salas V, Rinaldi MG, Guarro J.

Rev Iberoam Micol. 2010 Jun 30;27(2):80-9. doi: 10.1016/j.riam.2010.01.006. Epub 2010 Mar 4.

10.

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer.

Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, Pearson O, Wu Z, Chang J, Kaul R, Hoffmaster AR, Brettin TS, Robison RA, Mayo M, Gee JE, Tan P, Currie BJ, Keim P.

BMC Biol. 2009 Nov 18;7:78. doi: 10.1186/1741-7007-7-78.

11.

Changing epidemiology of an emerging infection: zygomycosis.

Meis JF, Chakrabarti A.

Clin Microbiol Infect. 2009 Oct;15 Suppl 5:10-4. doi: 10.1111/j.1469-0691.2009.02973.x. Review.

12.

Fast and accurate short read alignment with Burrows-Wheeler transform.

Li H, Durbin R.

Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.

13.

Invasive cutaneous infection caused by Apophysomyces elegans associated with a spider bite.

Saravia-Flores M, Guaran DM, Argueta V.

Mycoses. 2010 May;53(3):259-61. doi: 10.1111/j.1439-0507.2009.01698.x. Epub 2009 Mar 7.

PMID:
19389070
14.

Spectrum of zygomycete species identified in clinically significant specimens in the United States.

Alvarez E, Sutton DA, Cano J, Fothergill AW, Stchigel A, Rinaldi MG, Guarro J.

J Clin Microbiol. 2009 Jun;47(6):1650-6. doi: 10.1128/JCM.00036-09. Epub 2009 Apr 22.

15.

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.

Hernandez D, François P, Farinelli L, Osterås M, Schrenzel J.

Genome Res. 2008 May;18(5):802-9. doi: 10.1101/gr.072033.107. Epub 2008 Mar 10.

16.

Fatal cellulitis caused by Apophysomyces elegans.

Kindo AJ, Shams NR, Kumar K, Kannan S, Vidya S, Kumar AR, Kalyani J.

Indian J Med Microbiol. 2007 Jul;25(3):285-7.

17.

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Tamura K, Dudley J, Nei M, Kumar S.

Mol Biol Evol. 2007 Aug;24(8):1596-9. Epub 2007 May 7.

PMID:
17488738
18.

Necrotizing fasciitis caused by Apophysomyces elegans complicating soft-tissue and pelvic injuries in a tsunami survivor from Thailand.

Snell BJ, Tavakoli K.

Plast Reconstr Surg. 2007 Jan;119(1):448-9. No abstract available.

PMID:
17255729
19.

Rhino-orbitocerebral mucormycosis caused by Apophysomyces elegans.

Liang KP, Tleyjeh IM, Wilson WR, Roberts GD, Temesgen Z.

J Clin Microbiol. 2006 Mar;44(3):892-8. Review.

20.

[Necrotizing fasciitis in an immunocompetent patient caused by Apophysomyces elegans].

Ruiz CE, Arango M, Correa AL, López LS, Restrepo A.

Biomedica. 2004 Sep;24(3):239-51. Spanish.

PMID:
15551876

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