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Items: 1 to 20 of 43

1.

Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins.

Eriksson A, Manica A.

Proc Natl Acad Sci U S A. 2012 Aug 28;109(35):13956-60. doi: 10.1073/pnas.1200567109. Epub 2012 Aug 14.

2.

Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity.

Yang MA, Malaspinas AS, Durand EY, Slatkin M.

Mol Biol Evol. 2012 Oct;29(10):2987-95. Epub 2012 Apr 18.

3.

Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression.

Currat M, Excoffier L.

Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15129-34. doi: 10.1073/pnas.1107450108. Epub 2011 Sep 12.

4.

The history of African gene flow into Southern Europeans, Levantines, and Jews.

Moorjani P, Patterson N, Hirschhorn JN, Keinan A, Hao L, Atzmon G, Burns E, Ostrer H, Price AL, Reich D.

PLoS Genet. 2011 Apr;7(4):e1001373. doi: 10.1371/journal.pgen.1001373. Epub 2011 Apr 21.

5.

Dating the age of admixture via wavelet transform analysis of genome-wide data.

Pugach I, Matveyev R, Wollstein A, Kayser M, Stoneking M.

Genome Biol. 2011;12(2):R19. doi: 10.1186/gb-2011-12-2-r19. Epub 2011 Feb 25.

6.

Testing for ancient admixture between closely related populations.

Durand EY, Patterson N, Reich D, Slatkin M.

Mol Biol Evol. 2011 Aug;28(8):2239-52. doi: 10.1093/molbev/msr048. Epub 2011 Feb 15.

7.

Genetic history of an archaic hominin group from Denisova Cave in Siberia.

Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL, Maricic T, Good JM, Marques-Bonet T, Alkan C, Fu Q, Mallick S, Li H, Meyer M, Eichler EE, Stoneking M, Richards M, Talamo S, Shunkov MV, Derevianko AP, Hublin JJ, Kelso J, Slatkin M, Pääbo S.

Nature. 2010 Dec 23;468(7327):1053-60. doi: 10.1038/nature09710.

8.

A map of human genome variation from population-scale sequencing.

1000 Genomes Project Consortium, Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA.

Nature. 2010 Oct 28;467(7319):1061-73. doi: 10.1038/nature09534. Erratum in: Nature. 2011 May 26;473(7348):544. Xue, Yali [added]; Cartwright, Reed A [added]; Altshuler, David L [corrected to Altshuler, David]; Kebbel, Andrew [corrected to Keebler, Jonathan]; Koko-Gonzales, Paula [corrected to Kokko-Gonzales, Paula]; Nickerson, Debbie A [corrected to Nickerson, Deborah A].

9.

A draft sequence of the Neandertal genome.

Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, Alkan C, Prüfer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Höber B, Höffner B, Siegemund M, Weihmann A, Nusbaum C, Lander ES, Russ C, Novod N, Affourtit J, Egholm M, Verna C, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PLF, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, Pääbo S.

Science. 2010 May 7;328(5979):710-722. doi: 10.1126/science.1188021.

10.

Out of Africa: modern human origins special feature: the origin of Neandertals.

Hublin JJ.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16022-7. doi: 10.1073/pnas.0904119106. Epub 2009 Sep 15.

11.

Targeted retrieval and analysis of five Neandertal mtDNA genomes.

Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Lalueza-Fox C, Rudan P, Brajkovic D, Kucan Z, Gusic I, Schmitz R, Doronichev VB, Golovanova LV, de la Rasilla M, Fortea J, Rosas A, Pääbo S.

Science. 2009 Jul 17;325(5938):318-21. doi: 10.1126/science.1174462.

12.

Sensitive detection of chromosomal segments of distinct ancestry in admixed populations.

Price AL, Tandon A, Patterson N, Barnes KC, Rafaels N, Ruczinski I, Beaty TH, Mathias R, Reich D, Myers S.

PLoS Genet. 2009 Jun;5(6):e1000519. doi: 10.1371/journal.pgen.1000519. Epub 2009 Jun 19.

13.

Widespread genomic signatures of natural selection in hominid evolution.

McVicker G, Gordon D, Davis C, Green P.

PLoS Genet. 2009 May;5(5):e1000471. doi: 10.1371/journal.pgen.1000471. Epub 2009 May 8.

14.

Detecting ancient admixture and estimating demographic parameters in multiple human populations.

Wall JD, Lohmueller KE, Plagnol V.

Mol Biol Evol. 2009 Aug;26(8):1823-7. doi: 10.1093/molbev/msp096. Epub 2009 May 6.

15.

The genetic structure and history of Africans and African Americans.

Tishkoff SA, Reed FA, Friedlaender FR, Ehret C, Ranciaro A, Froment A, Hirbo JB, Awomoyi AA, Bodo JM, Doumbo O, Ibrahim M, Juma AT, Kotze MJ, Lema G, Moore JH, Mortensen H, Nyambo TB, Omar SA, Powell K, Pretorius GS, Smith MW, Thera MA, Wambebe C, Weber JL, Williams SM.

Science. 2009 May 22;324(5930):1035-44. doi: 10.1126/science.1172257. Epub 2009 Apr 30.

16.

Early modern human diversity suggests subdivided population structure and a complex out-of-Africa scenario.

Gunz P, Bookstein FL, Mitteroecker P, Stadlmayr A, Seidler H, Weber GW.

Proc Natl Acad Sci U S A. 2009 Apr 14;106(15):6094-8. doi: 10.1073/pnas.0808160106. Epub 2009 Mar 23. Erratum in: Proc Natl Acad Sci U S A. 2009 May 19;106(20):8398.

17.

Pervasive hitchhiking at coding and regulatory sites in humans.

Cai JJ, Macpherson JM, Sella G, Petrov DA.

PLoS Genet. 2009 Jan;5(1):e1000336. doi: 10.1371/journal.pgen.1000336. Epub 2009 Jan 16.

18.

Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Li H, Ruan J, Durbin R.

Genome Res. 2008 Nov;18(11):1851-8. doi: 10.1101/gr.078212.108. Epub 2008 Aug 19.

19.

A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing.

Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano HA, Ronan M, Rothberg JM, Egholm M, Rudan P, Brajković D, Kućan Z, Gusić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S.

Cell. 2008 Aug 8;134(3):416-26. doi: 10.1016/j.cell.2008.06.021.

20.

Subdivision in an ancestral species creates asymmetry in gene trees.

Slatkin M, Pollack JL.

Mol Biol Evol. 2008 Oct;25(10):2241-6. doi: 10.1093/molbev/msn172. Epub 2008 Aug 9.

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