Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 34

1.

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma.

Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, Earl AM, Ojesina AI, Jung J, Bass AJ, Tabernero J, Baselga J, Liu C, Shivdasani RA, Ogino S, Birren BW, Huttenhower C, Garrett WS, Meyerson M.

Genome Res. 2012 Feb;22(2):292-8. doi: 10.1101/gr.126573.111.

2.

Gut microbiome, obesity, and metabolic dysfunction.

Tilg H, Kaser A.

J Clin Invest. 2011 Jun;121(6):2126-32. doi: 10.1172/JCI58109. Review.

3.

Enterotypes of the human gut microbiome.

Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin J, Sicheritz-Ponten T, Tims S, Torrents D, Ugarte E, Zoetendal EG, Wang J, Guarner F, Pedersen O, de Vos WM, Brunak S, Doré J; MetaHIT Consortium., Antolín M, Artiguenave F, Blottiere HM, Almeida M, Brechot C, Cara C, Chervaux C, Cultrone A, Delorme C, Denariaz G, Dervyn R, Foerstner KU, Friss C, van de Guchte M, Guedon E, Haimet F, Huber W, van Hylckama-Vlieg J, Jamet A, Juste C, Kaci G, Knol J, Lakhdari O, Layec S, Le Roux K, Maguin E, Mérieux A, Melo Minardi R, M'rini C, Muller J, Oozeer R, Parkhill J, Renault P, Rescigno M, Sanchez N, Sunagawa S, Torrejon A, Turner K, Vandemeulebrouck G, Varela E, Winogradsky Y, Zeller G, Weissenbach J, Ehrlich SD, Bork P.

Nature. 2011 May 12;473(7346):174-80. doi: 10.1038/nature09944. Erratum in: Nature. 2011 Jun 30;474(7353):666. Nature. 2014 Feb 27;506(7489):516.

4.

Functional molecular ecological networks.

Zhou J, Deng Y, Luo F, He Z, Tu Q, Zhi X.

MBio. 2010 Oct 5;1(4). pii: e00169-10. doi: 10.1128/mBio.00169-10.

5.

Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche.

Purushe J, Fouts DE, Morrison M, White BA, Mackie RI; North American Consortium for Rumen Bacteria., Coutinho PM, Henrissat B, Nelson KE.

Microb Ecol. 2010 Nov;60(4):721-9. doi: 10.1007/s00248-010-9692-8.

PMID:
20585943
6.

Vaginal microbiome of reproductive-age women.

Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Gorle R, Russell J, Tacket CO, Brotman RM, Davis CC, Ault K, Peralta L, Forney LJ.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4680-7. doi: 10.1073/pnas.1002611107.

7.

Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians.

Biagi E, Nylund L, Candela M, Ostan R, Bucci L, Pini E, Nikkïla J, Monti D, Satokari R, Franceschi C, Brigidi P, De Vos W.

PLoS One. 2010 May 17;5(5):e10667. doi: 10.1371/journal.pone.0010667. Erratum in: PLoS One. 2010;5(6). doi: 10.1371/annotation/df45912f-d15c-44ab-8312-e7ec0607604d.

8.

A catalog of reference genomes from the human microbiome.

Human Microbiome Jumpstart Reference Strains Consortium., Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Xu Q, Pohl C, Wilczek-Boney K, Zhu D.

Science. 2010 May 21;328(5981):994-9. doi: 10.1126/science.1183605.

9.

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. No abstract available.

10.

Endoplasmic reticulum stress and the inflammatory basis of metabolic disease.

Hotamisligil GS.

Cell. 2010 Mar 19;140(6):900-17. doi: 10.1016/j.cell.2010.02.034. Review.

11.

Obesity and the human microbiome.

Ley RE.

Curr Opin Gastroenterol. 2010 Jan;26(1):5-11. doi: 10.1097/MOG.0b013e328333d751. Review.

PMID:
19901833
12.

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF.

Appl Environ Microbiol. 2009 Dec;75(23):7537-41. doi: 10.1128/AEM.01541-09.

13.

High-fat diet determines the composition of the murine gut microbiome independently of obesity.

Hildebrandt MA, Hoffmann C, Sherrill-Mix SA, Keilbaugh SA, Hamady M, Chen YY, Knight R, Ahima RS, Bushman F, Wu GD.

Gastroenterology. 2009 Nov;137(5):1716-24.e1-2. doi: 10.1053/j.gastro.2009.08.042.

14.

Interplay between obesity and associated metabolic disorders: new insights into the gut microbiota.

Cani PD, Delzenne NM.

Curr Opin Pharmacol. 2009 Dec;9(6):737-43. doi: 10.1016/j.coph.2009.06.016. Review.

PMID:
19628432
15.

Microbiota and SCFA in lean and overweight healthy subjects.

Schwiertz A, Taras D, Schäfer K, Beijer S, Bos NA, Donus C, Hardt PD.

Obesity (Silver Spring). 2010 Jan;18(1):190-5. doi: 10.1038/oby.2009.167.

16.

The role of the gut microbiota in energy metabolism and metabolic disease.

Cani PD, Delzenne NM.

Curr Pharm Des. 2009;15(13):1546-58. Review.

PMID:
19442172
17.

A core gut microbiome in obese and lean twins.

Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI.

Nature. 2009 Jan 22;457(7228):480-4. doi: 10.1038/nature07540.

18.

The genetic response to short-term interventions affecting cardiovascular function: rationale and design of the Heredity and Phenotype Intervention (HAPI) Heart Study.

Mitchell BD, McArdle PF, Shen H, Rampersaud E, Pollin TI, Bielak LF, Jaquish C, Douglas JA, Roy-Gagnon MH, Sack P, Naglieri R, Hines S, Horenstein RB, Chang YP, Post W, Ryan KA, Brereton NH, Pakyz RE, Sorkin J, Damcott CM, O'Connell JR, Mangano C, Corretti M, Vogel R, Herzog W, Weir MR, Peyser PA, Shuldiner AR.

Am Heart J. 2008 May;155(5):823-8. doi: 10.1016/j.ahj.2008.01.019.

19.

Getting a tree fast: Neighbor Joining, FastME, and distance-based methods.

Desper R, Gascuel O.

Curr Protoc Bioinformatics. 2006 Oct;Chapter 6:Unit 6.3. doi: 10.1002/0471250953.bi0603s15.

PMID:
18428768
20.

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex.

Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R.

Nat Methods. 2008 Mar;5(3):235-7. doi: 10.1038/nmeth.1184.

Items per page

Supplemental Content

Support Center